RNA–Protein interactions for RNA: ENST00000558072.5

TPM1-209, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-209ENST00000558072 STAG3Q9UJ98 1225 aa17.79■□□□□ 0.44
TPM1-209ENST00000558072 KDM5AP29375 1690 aaKnown RBP17.78■□□□□ 0.44
TPM1-209ENST00000558072 HDGFP51858 240 aaKnown RBP17.78■□□□□ 0.44
TPM1-209ENST00000558072 ZNF326Q5BKZ1 582 aaKnown RBP17.77■□□□□ 0.44
TPM1-209ENST00000558072 RIMS2Q9UQ26 1411 aa17.76■□□□□ 0.43
TPM1-209ENST00000558072 ZFYVE9O95405 1425 aa17.75■□□□□ 0.43
TPM1-209ENST00000558072 POLR1AO95602 1720 aaPredicted RBP17.75■□□□□ 0.43
TPM1-209ENST00000558072 PPP1R15AO75807 674 aaPredicted RBP17.74■□□□□ 0.43
TPM1-209ENST00000558072 L3MBTL2Q969R5 705 aa17.74■□□□□ 0.43
TPM1-209ENST00000558072 ARHGAP23Q9P227 1491 aa17.74■□□□□ 0.43
TPM1-209ENST00000558072 SLIT1O75093 1534 aa17.73■□□□□ 0.43
TPM1-209ENST00000558072 IQGAP1P46940 1657 aa17.73■□□□□ 0.43
TPM1-209ENST00000558072 STRCQ7RTU9 1775 aa17.72■□□□□ 0.43
TPM1-209ENST00000558072 TMEM2Q9UHN6 1383 aa17.72■□□□□ 0.43
TPM1-209ENST00000558072 LTKP29376 864 aa17.71■□□□□ 0.43
TPM1-209ENST00000558072 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.71■□□□□ 0.43
TPM1-209ENST00000558072 DCAF11Q8TEB1 546 aa17.71■□□□□ 0.43
TPM1-209ENST00000558072 KDM2AQ9Y2K7 1162 aa17.71■□□□□ 0.43
TPM1-209ENST00000558072 NCKAP5LQ9HCH0 1330 aa17.71■□□□□ 0.42
TPM1-209ENST00000558072 VGFO15240 615 aaPredicted RBP17.7■□□□□ 0.42
TPM1-209ENST00000558072 THEMISQ8N1K5 641 aaPredicted RBP17.7■□□□□ 0.42
TPM1-209ENST00000558072 NRXN3Q9Y4C0 1643 aa17.69■□□□□ 0.42
TPM1-209ENST00000558072 ADGRF5Q8IZF2 1346 aa17.69■□□□□ 0.42
TPM1-209ENST00000558072 SCAF11Q99590 1463 aaKnown RBP17.69■□□□□ 0.42
TPM1-209ENST00000558072 MYOM2P54296 1465 aa17.66■□□□□ 0.42
TPM1-209ENST00000558072 TXNDC2Q86VQ3 553 aa17.65■□□□□ 0.42
TPM1-209ENST00000558072 SETD1AO15047 1707 aaKnown RBP17.64■□□□□ 0.41
TPM1-209ENST00000558072 EID1Q9Y6B2 187 aa17.64■□□□□ 0.41
TPM1-209ENST00000558072 NRXN1Q9ULB1 1477 aa17.63■□□□□ 0.41
TPM1-209ENST00000558072 ASXL1Q8IXJ9 1541 aa17.62■□□□□ 0.41
TPM1-209ENST00000558072 NBPF8Q3BBV2 869 aa17.62■□□□□ 0.41
TPM1-209ENST00000558072 NPHP4O75161 1426 aaPredicted RBP17.62■□□□□ 0.41
TPM1-209ENST00000558072 PIK3C2GO75747 1445 aa17.61■□□□□ 0.41
TPM1-209ENST00000558072 PRAG1Q86YV5 1406 aa17.61■□□□□ 0.41
TPM1-209ENST00000558072 PLEKHG1Q9ULL1 1385 aa17.6■□□□□ 0.41
TPM1-209ENST00000558072 ADAMTS13Q76LX8 1427 aa17.6■□□□□ 0.41
TPM1-209ENST00000558072 SETBP1Q9Y6X0 1596 aa17.6■□□□□ 0.41
TPM1-209ENST00000558072 TRPM1Q7Z4N2 1603 aa17.6■□□□□ 0.41
TPM1-209ENST00000558072 ALKQ9UM73 1620 aa17.59■□□□□ 0.41
TPM1-209ENST00000558072 ANKLE2Q86XL3 938 aa17.59■□□□□ 0.41
TPM1-209ENST00000558072 BCANQ96GW7 911 aa17.59■□□□□ 0.41
TPM1-209ENST00000558072 SLC26A8Q96RN1 970 aa17.58■□□□□ 0.4
TPM1-209ENST00000558072 MED14O60244 1454 aa17.56■□□□□ 0.4
TPM1-209ENST00000558072 CFAP70Q5T0N1 1121 aa17.56■□□□□ 0.4
TPM1-209ENST00000558072 STRCP1A6NGW2 1772 aa17.54■□□□□ 0.4
TPM1-209ENST00000558072 RALGAPBQ86X10 1494 aa17.54■□□□□ 0.4
TPM1-209ENST00000558072 LAMC1P11047 1609 aa17.54■□□□□ 0.4
TPM1-209ENST00000558072 METP08581 1390 aa17.53■□□□□ 0.4
TPM1-209ENST00000558072 KIAA1210Q9ULL0 1709 aa17.53■□□□□ 0.4
TPM1-209ENST00000558072 NBPF1Q3BBV0 1214 aa17.53■□□□□ 0.4
TPM1-209ENST00000558072 C14orf93Q9H972 538 aaKnown RBP17.53■□□□□ 0.4
TPM1-209ENST00000558072 PTPRUQ92729 1446 aa17.53■□□□□ 0.4
TPM1-209ENST00000558072 ADGRB1O14514 1584 aa17.53■□□□□ 0.4
TPM1-209ENST00000558072 ROCK2O75116 1388 aaKnown RBP17.53■□□□□ 0.4
TPM1-209ENST00000558072 SLC24A1O60721 1099 aa17.52■□□□□ 0.4
TPM1-209ENST00000558072 TMEM132EQ6IEE7 984 aa17.52■□□□□ 0.4
TPM1-209ENST00000558072 DIP2AQ14689 1571 aa17.51■□□□□ 0.39
TPM1-209ENST00000558072 CARD11Q9BXL7 1154 aa17.51■□□□□ 0.39
TPM1-209ENST00000558072 GPRASP1Q5JY77 1395 aa17.5■□□□□ 0.39
TPM1-209ENST00000558072 EIF4G2P78344 907 aaKnown RBP eCLIP17.49■□□□□ 0.39
TPM1-209ENST00000558072 XRN1Q8IZH2 1706 aaKnown RBP17.48■□□□□ 0.39
TPM1-209ENST00000558072 EIF3AQ14152 1382 aaKnown RBP17.47■□□□□ 0.39
TPM1-209ENST00000558072 CHD2O14647 1828 aaKnown RBP17.47■□□□□ 0.39
TPM1-209ENST00000558072 ZNF335Q9H4Z2 1342 aaPredicted RBP17.47■□□□□ 0.39
TPM1-209ENST00000558072 STK26Q9P289 416 aa17.46■□□□□ 0.39
TPM1-209ENST00000558072 ARHGEF28Q8N1W1 1705 aaKnown RBP17.46■□□□□ 0.39
TPM1-209ENST00000558072 NWD1Q149M9 1564 aa17.45■□□□□ 0.38
TPM1-209ENST00000558072 TBX22Q9Y458 520 aa17.45■□□□□ 0.38
TPM1-209ENST00000558072 KNDC1Q76NI1 1749 aa17.44■□□□□ 0.38
TPM1-209ENST00000558072 RBM33Q96EV2 1170 aaKnown RBP17.44■□□□□ 0.38
TPM1-209ENST00000558072 YTHDC2Q9H6S0 1430 aaKnown RBP17.43■□□□□ 0.38
TPM1-209ENST00000558072 PIK3R4Q99570 1358 aa17.42■□□□□ 0.38
TPM1-209ENST00000558072 PLEKHH1Q9ULM0 1364 aa17.41■□□□□ 0.38
TPM1-209ENST00000558072 TRAK1Q9UPV9 953 aa17.41■□□□□ 0.38
TPM1-209ENST00000558072 CPS1P31327 1500 aa17.41■□□□□ 0.38
TPM1-209ENST00000558072 USP47Q96K76 1375 aa17.4■□□□□ 0.38
TPM1-209ENST00000558072 KCNA6P17658 529 aa17.4■□□□□ 0.38
TPM1-209ENST00000558072 LRPPRCP42704 1394 aaKnown RBP17.4■□□□□ 0.38
TPM1-209ENST00000558072 ROBO2Q9HCK4 1378 aa17.4■□□□□ 0.38
TPM1-209ENST00000558072 AMOTL2Q9Y2J4 779 aa17.39■□□□□ 0.37
TPM1-209ENST00000558072 DMRT2Q9Y5R5 561 aa17.39■□□□□ 0.37
TPM1-209ENST00000558072 XIRP1Q702N8 1843 aaKnown RBP17.39■□□□□ 0.37
TPM1-209ENST00000558072 ZNF316A6NFI3 1004 aaPredicted RBP17.38■□□□□ 0.37
TPM1-209ENST00000558072 SAFB2Q14151 953 aaKnown RBP eCLIP17.38■□□□□ 0.37
TPM1-209ENST00000558072 SIRT1Q96EB6 747 aa17.38■□□□□ 0.37
TPM1-209ENST00000558072 QRICH2Q9H0J4 1663 aa17.38■□□□□ 0.37
TPM1-209ENST00000558072 LTBP4Q8N2S1 1624 aa17.37■□□□□ 0.37
TPM1-209ENST00000558072 NALCNQ8IZF0 1738 aa17.37■□□□□ 0.37
TPM1-209ENST00000558072 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.36■□□□□ 0.37
TPM1-209ENST00000558072 HSPA5P11021 654 aaKnown RBP17.36■□□□□ 0.37
TPM1-209ENST00000558072 WAPLQ7Z5K2 1190 aa17.36■□□□□ 0.37
TPM1-209ENST00000558072 HIRIP3Q9BW71 556 aaPredicted RBP17.36■□□□□ 0.37
TPM1-209ENST00000558072 ABCC11Q96J66 1382 aa17.36■□□□□ 0.37
TPM1-209ENST00000558072 CDCA8Q53HL2 280 aa17.35■□□□□ 0.37
TPM1-209ENST00000558072 TECPR2O15040 1411 aa17.35■□□□□ 0.37
TPM1-209ENST00000558072 DLC1Q96QB1 1528 aa17.35■□□□□ 0.37
TPM1-209ENST00000558072 LRRC7Q96NW7 1537 aa17.33■□□□□ 0.37
TPM1-209ENST00000558072 NKTRP30414 1462 aaKnown RBP17.33■□□□□ 0.37
TPM1-209ENST00000558072 PTCH1Q13635 1447 aa17.33■□□□□ 0.36
TPM1-209ENST00000558072 PRAM1Q96QH2 718 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms