RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 PANK3Q9H999 370 aa17.29■□□□□ 0.36
SHMT2-226ENST00000556825 THOC2Q8NI27 1593 aaKnown RBP17.28■□□□□ 0.36
SHMT2-226ENST00000556825 AEBP1Q8IUX7 1158 aa17.28■□□□□ 0.36
SHMT2-226ENST00000556825 WWC1Q8IX03 1113 aa17.28■□□□□ 0.36
SHMT2-226ENST00000556825 ZKSCAN5Q9Y2L8 839 aa17.28■□□□□ 0.36
SHMT2-226ENST00000556825 ZNF608Q9ULD9 1512 aaPredicted RBP17.28■□□□□ 0.36
SHMT2-226ENST00000556825 SOX12O15370 315 aa17.28■□□□□ 0.36
SHMT2-226ENST00000556825 ZNF622Q969S3 477 aaKnown RBP eCLIP17.28■□□□□ 0.36
SHMT2-226ENST00000556825 GEMIN8Q9NWZ8 242 aaKnown RBP17.28■□□□□ 0.36
SHMT2-226ENST00000556825 ADAMTS12P58397 1594 aa17.27■□□□□ 0.36
SHMT2-226ENST00000556825 CFAP43Q8NDM7 1665 aa17.27■□□□□ 0.36
SHMT2-226ENST00000556825 APPP05067 770 aa17.27■□□□□ 0.35
SHMT2-226ENST00000556825 PTMSP20962 102 aa17.26■□□□□ 0.35
SHMT2-226ENST00000556825 GTF2F1P35269 517 aaKnown RBP eCLIP17.26■□□□□ 0.35
SHMT2-226ENST00000556825 CCDC66A2RUB6 948 aa17.25■□□□□ 0.35
SHMT2-226ENST00000556825 TULP2O00295 520 aa17.25■□□□□ 0.35
SHMT2-226ENST00000556825 FAM50AQ14320 339 aaKnown RBP17.25■□□□□ 0.35
SHMT2-226ENST00000556825 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.25■□□□□ 0.35
SHMT2-226ENST00000556825 TIGD1Q96MW7 591 aa17.25■□□□□ 0.35
SHMT2-226ENST00000556825 UACAQ9BZF9 1416 aa17.25■□□□□ 0.35
SHMT2-226ENST00000556825 IGSF3O75054 1194 aa17.24■□□□□ 0.35
SHMT2-226ENST00000556825 POLR1AO95602 1720 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-226ENST00000556825 MYCNP04198 464 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-226ENST00000556825 NGEFQ8N5V2 710 aa17.24■□□□□ 0.35
SHMT2-226ENST00000556825 ATP1B4Q9UN42 357 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-226ENST00000556825 C20orf194Q5TEA3 1177 aa17.24■□□□□ 0.35
SHMT2-226ENST00000556825 TBC1D32Q96NH3 1257 aa17.24■□□□□ 0.35
SHMT2-226ENST00000556825 TSPYL1Q9H0U9 437 aa17.24■□□□□ 0.35
SHMT2-226ENST00000556825 TULP1O00294 542 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-226ENST00000556825 PDLIM2Q96JY6 352 aa17.23■□□□□ 0.35
SHMT2-226ENST00000556825 PRIMPOLQ96LW4 560 aa17.23■□□□□ 0.35
SHMT2-226ENST00000556825 SAMD9Q5K651 1589 aa17.23■□□□□ 0.35
SHMT2-226ENST00000556825 RBM25P49756 843 aaKnown RBP17.23■□□□□ 0.35
SHMT2-226ENST00000556825 GABPB1Q06547 395 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-226ENST00000556825 SPRYD3Q8NCJ5 442 aa17.23■□□□□ 0.35
SHMT2-226ENST00000556825 SPDYE4A6NLX3 237 aa17.22■□□□□ 0.35
SHMT2-226ENST00000556825 UPF2Q9HAU5 1272 aaKnown RBP17.22■□□□□ 0.35
SHMT2-226ENST00000556825 IBTKQ9P2D0 1353 aaPredicted RBP17.22■□□□□ 0.35
SHMT2-226ENST00000556825 FAM193AP78312 1265 aa17.21■□□□□ 0.35
SHMT2-226ENST00000556825 KIF3AQ9Y496 699 aa17.21■□□□□ 0.35
SHMT2-226ENST00000556825 FMN1Q68DA7 1419 aa17.21■□□□□ 0.35
SHMT2-226ENST00000556825 CASKIN1Q8WXD9 1431 aa17.21■□□□□ 0.35
SHMT2-226ENST00000556825 SCAPERQ9BY12 1400 aa17.21■□□□□ 0.35
SHMT2-226ENST00000556825 HMGN5P82970 282 aaKnown RBP17.21■□□□□ 0.35
SHMT2-226ENST00000556825 FYCO1Q9BQS8 1478 aa17.21■□□□□ 0.35
SHMT2-226ENST00000556825 EIF4G3O43432 1585 aaKnown RBP17.21■□□□□ 0.34
SHMT2-226ENST00000556825 NINLQ9Y2I6 1382 aa17.21■□□□□ 0.34
SHMT2-226ENST00000556825 TRIM6-TRIM34B2RNG4 842 aa17.2■□□□□ 0.34
SHMT2-226ENST00000556825 TRIM34Q9BYJ4 488 aa17.2■□□□□ 0.34
SHMT2-226ENST00000556825 CAPN2P17655 700 aa17.2■□□□□ 0.34
SHMT2-226ENST00000556825 RALBP1Q15311 655 aa17.19■□□□□ 0.34
SHMT2-226ENST00000556825 FEZ1Q99689 392 aa17.19■□□□□ 0.34
SHMT2-226ENST00000556825 ZNF692Q9BU19 519 aaPredicted RBP17.19■□□□□ 0.34
SHMT2-226ENST00000556825 PDCL2Q8N4E4 241 aa17.18■□□□□ 0.34
SHMT2-226ENST00000556825 CDCA7LQ96GN5 454 aa17.18■□□□□ 0.34
SHMT2-226ENST00000556825 HSP90AB1P08238 724 aaKnown RBP17.17■□□□□ 0.34
SHMT2-226ENST00000556825 EFCC1Q9HA90 598 aa17.17■□□□□ 0.34
SHMT2-226ENST00000556825 BRD4O60885 1362 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-226ENST00000556825 SNAPC4Q5SXM2 1469 aa17.17■□□□□ 0.34
SHMT2-226ENST00000556825 JARID2Q92833 1246 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-226ENST00000556825 CHMP4CQ96CF2 233 aa17.17■□□□□ 0.34
SHMT2-226ENST00000556825 GBP4Q96PP9 640 aa17.17■□□□□ 0.34
SHMT2-226ENST00000556825 IQGAP2Q13576 1575 aa17.16■□□□□ 0.34
SHMT2-226ENST00000556825 CCDC18Q5T9S5 1454 aa17.16■□□□□ 0.34
SHMT2-226ENST00000556825 TSC1Q92574 1164 aa17.16■□□□□ 0.34
SHMT2-226ENST00000556825 MAPK8IP3Q9UPT6 1336 aa17.16■□□□□ 0.34
SHMT2-226ENST00000556825 PTMAP06454 111 aaKnown RBP17.16■□□□□ 0.34
SHMT2-226ENST00000556825 OGFRQ9NZT2 677 aa17.16■□□□□ 0.34
SHMT2-226ENST00000556825 CCDC39Q9UFE4 941 aa17.16■□□□□ 0.34
SHMT2-226ENST00000556825 SPATA31E1Q6ZUB1 1445 aa17.15■□□□□ 0.34
SHMT2-226ENST00000556825 SLFN14P0C7P3 912 aa17.15■□□□□ 0.34
SHMT2-226ENST00000556825 ROCK2O75116 1388 aaKnown RBP17.14■□□□□ 0.33
SHMT2-226ENST00000556825 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.14■□□□□ 0.33
SHMT2-226ENST00000556825 ZBTB9Q96C00 473 aa17.14■□□□□ 0.33
SHMT2-226ENST00000556825 CALCOCO1Q9P1Z2 691 aa17.14■□□□□ 0.33
SHMT2-226ENST00000556825 DDIT3P35638 169 aa17.13■□□□□ 0.33
SHMT2-226ENST00000556825 TNPO1Q92973 898 aaKnown RBP17.13■□□□□ 0.33
SHMT2-226ENST00000556825 CCDC144AA2RUR9 1427 aa17.12■□□□□ 0.33
SHMT2-226ENST00000556825 GRIPAP1Q4V328 841 aa17.12■□□□□ 0.33
SHMT2-226ENST00000556825 U2AF2P26368 475 aaKnown RBP eCLIP17.11■□□□□ 0.334e-8■■□□□ 14.1
SHMT2-226ENST00000556825 ZNF445P59923 1031 aa17.11■□□□□ 0.33
SHMT2-226ENST00000556825 BCL2L12Q9HB09 334 aa17.11■□□□□ 0.33
SHMT2-226ENST00000556825 MAGI1Q96QZ7 1491 aaPredicted RBP17.11■□□□□ 0.33
SHMT2-226ENST00000556825 PATL2C9JE40 543 aaKnown RBP17.11■□□□□ 0.33
SHMT2-226ENST00000556825 CC2D1BQ5T0F9 858 aaKnown RBP17.11■□□□□ 0.33
SHMT2-226ENST00000556825 KIAA2012Q0VF49 1180 aa17.1■□□□□ 0.33
SHMT2-226ENST00000556825 GRIN2AQ12879 1464 aa17.09■□□□□ 0.33
SHMT2-226ENST00000556825 CIZ1Q9ULV3 898 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-226ENST00000556825 NCOA3Q9Y6Q9 1424 aa17.09■□□□□ 0.33
SHMT2-226ENST00000556825 ANKRD7Q92527 254 aa17.09■□□□□ 0.33
SHMT2-226ENST00000556825 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.08■□□□□ 0.33
SHMT2-226ENST00000556825 LRRIQ1Q96JM4 1722 aa17.08■□□□□ 0.33
SHMT2-226ENST00000556825 KIAA0586Q9BVV6 1533 aa17.08■□□□□ 0.32
SHMT2-226ENST00000556825 LOC102724159A0A0B4J2E5 919 aa17.08■□□□□ 0.32
SHMT2-226ENST00000556825 PWP2Q15269 919 aaKnown RBP17.08■□□□□ 0.32
SHMT2-226ENST00000556825 C14orf37Q86TY3 774 aa17.08■□□□□ 0.32
SHMT2-226ENST00000556825 CHMP7Q8WUX9 453 aaPredicted RBP17.08■□□□□ 0.32
SHMT2-226ENST00000556825 UGGT2Q9NYU1 1516 aa17.07■□□□□ 0.32
SHMT2-226ENST00000556825 MYBBP1AQ9BQG0 1328 aaKnown RBP17.07■□□□□ 0.32
SHMT2-226ENST00000556825 KLHL40Q2TBA0 621 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 142 ms