RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.87■□□□□ 0.13
SHMT2-218ENST00000555213 NEURL4Q96JN8 1562 aa15.87■□□□□ 0.13
SHMT2-218ENST00000555213 ZEB1P37275 1124 aaPredicted RBP15.86■□□□□ 0.13
SHMT2-218ENST00000555213 TXNDC2Q86VQ3 553 aa15.86■□□□□ 0.13
SHMT2-218ENST00000555213 NCKAP5LQ9HCH0 1330 aa15.86■□□□□ 0.13
SHMT2-218ENST00000555213 ZFYVE9O95405 1425 aa15.85■□□□□ 0.13
SHMT2-218ENST00000555213 STRCQ7RTU9 1775 aa15.85■□□□□ 0.13
SHMT2-218ENST00000555213 MYO5BQ9ULV0 1848 aa15.85■□□□□ 0.13
SHMT2-218ENST00000555213 CLSPNQ9HAW4 1339 aa15.85■□□□□ 0.13
SHMT2-218ENST00000555213 NPHP4O75161 1426 aaPredicted RBP15.85■□□□□ 0.13
SHMT2-218ENST00000555213 SPATA31E1Q6ZUB1 1445 aa15.85■□□□□ 0.13
SHMT2-218ENST00000555213 MED14O60244 1454 aa15.84■□□□□ 0.13
SHMT2-218ENST00000555213 RPGRIP1LQ68CZ1 1315 aa15.84■□□□□ 0.13
SHMT2-218ENST00000555213 IQGAP1P46940 1657 aa15.83■□□□□ 0.12
SHMT2-218ENST00000555213 NEXMIFQ5QGS0 1516 aa15.82■□□□□ 0.12
SHMT2-218ENST00000555213 LTKP29376 864 aa15.81■□□□□ 0.12
SHMT2-218ENST00000555213 BCANQ96GW7 911 aa15.81■□□□□ 0.12
SHMT2-218ENST00000555213 PLEKHG1Q9ULL1 1385 aa15.81■□□□□ 0.12
SHMT2-218ENST00000555213 RGL3Q3MIN7 710 aa15.8■□□□□ 0.12
SHMT2-218ENST00000555213 CERKQ8TCT0 537 aa15.8■□□□□ 0.12
SHMT2-218ENST00000555213 VGFO15240 615 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-218ENST00000555213 NUTM2DQ5VT03 806 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-218ENST00000555213 ILDR2Q71H61 639 aa15.77■□□□□ 0.12
SHMT2-218ENST00000555213 SIN3AQ96ST3 1273 aa15.77■□□□□ 0.12
SHMT2-218ENST00000555213 PPLO60437 1756 aa15.77■□□□□ 0.11
SHMT2-218ENST00000555213 DIP2AQ14689 1571 aa15.76■□□□□ 0.11
SHMT2-218ENST00000555213 MYOM2P54296 1465 aa15.76■□□□□ 0.11
SHMT2-218ENST00000555213 DISP3Q9P2K9 1392 aa15.75■□□□□ 0.11
SHMT2-218ENST00000555213 SETBP1Q9Y6X0 1596 aa15.75■□□□□ 0.11
SHMT2-218ENST00000555213 SOCS7O14512 581 aa15.75■□□□□ 0.11
SHMT2-218ENST00000555213 IFT172Q9UG01 1749 aa15.74■□□□□ 0.11
SHMT2-218ENST00000555213 NEUROD1Q13562 356 aa15.74■□□□□ 0.11
SHMT2-218ENST00000555213 STAC3Q96MF2 364 aa15.74■□□□□ 0.11
SHMT2-218ENST00000555213 DCAF11Q8TEB1 546 aa15.71■□□□□ 0.11
SHMT2-218ENST00000555213 SLC26A8Q96RN1 970 aa15.71■□□□□ 0.11
SHMT2-218ENST00000555213 SENP3Q9H4L4 574 aaPredicted RBP15.71■□□□□ 0.11
SHMT2-218ENST00000555213 TONSLQ96HA7 1378 aa15.71■□□□□ 0.11
SHMT2-218ENST00000555213 PIK3C2GO75747 1445 aa15.7■□□□□ 0.1
SHMT2-218ENST00000555213 ADAMTS13Q76LX8 1427 aa15.7■□□□□ 0.1
SHMT2-218ENST00000555213 TBX22Q9Y458 520 aa15.7■□□□□ 0.1
SHMT2-218ENST00000555213 NRXN3Q9Y4C0 1643 aa15.69■□□□□ 0.1
SHMT2-218ENST00000555213 PIK3R4Q99570 1358 aa15.69■□□□□ 0.1
SHMT2-218ENST00000555213 NRXN1Q9ULB1 1477 aa15.69■□□□□ 0.1
SHMT2-218ENST00000555213 ADGRF5Q8IZF2 1346 aa15.68■□□□□ 0.1
SHMT2-218ENST00000555213 KDM2AQ9Y2K7 1162 aa15.68■□□□□ 0.1
SHMT2-218ENST00000555213 LAMC1P11047 1609 aa15.68■□□□□ 0.1
SHMT2-218ENST00000555213 ZNF335Q9H4Z2 1342 aaPredicted RBP15.68■□□□□ 0.1
SHMT2-218ENST00000555213 CPS1P31327 1500 aa15.67■□□□□ 0.1
SHMT2-218ENST00000555213 ALKQ9UM73 1620 aa15.66■□□□□ 0.1
SHMT2-218ENST00000555213 L3MBTL2Q969R5 705 aa15.65■□□□□ 0.1
SHMT2-218ENST00000555213 NWD1Q149M9 1564 aa15.65■□□□□ 0.1
SHMT2-218ENST00000555213 NKTRP30414 1462 aaKnown RBP15.65■□□□□ 0.1
SHMT2-218ENST00000555213 KCNA6P17658 529 aa15.64■□□□□ 0.09
SHMT2-218ENST00000555213 TIMELESSQ9UNS1 1208 aa15.63■□□□□ 0.09
SHMT2-218ENST00000555213 METP08581 1390 aa15.62■□□□□ 0.09
SHMT2-218ENST00000555213 PRAG1Q86YV5 1406 aa15.62■□□□□ 0.09
SHMT2-218ENST00000555213 LTBP4Q8N2S1 1624 aa15.62■□□□□ 0.09
SHMT2-218ENST00000555213 SETD1AO15047 1707 aaKnown RBP15.61■□□□□ 0.09
SHMT2-218ENST00000555213 C14orf93Q9H972 538 aaKnown RBP15.61■□□□□ 0.09
SHMT2-218ENST00000555213 CFAP70Q5T0N1 1121 aa15.59■□□□□ 0.09
SHMT2-218ENST00000555213 AMOTL2Q9Y2J4 779 aa15.59■□□□□ 0.09
SHMT2-218ENST00000555213 XRN1Q8IZH2 1706 aaKnown RBP15.59■□□□□ 0.09
SHMT2-218ENST00000555213 CHD2O14647 1828 aaKnown RBP15.59■□□□□ 0.09
SHMT2-218ENST00000555213 PTCH1Q13635 1447 aa15.58■□□□□ 0.08
SHMT2-218ENST00000555213 IQSEC2Q5JU85 1478 aa15.58■□□□□ 0.08
SHMT2-218ENST00000555213 ASXL1Q8IXJ9 1541 aa15.58■□□□□ 0.08
SHMT2-218ENST00000555213 KIAA1210Q9ULL0 1709 aa15.57■□□□□ 0.08
SHMT2-218ENST00000555213 LRPPRCP42704 1394 aaKnown RBP15.57■□□□□ 0.08
SHMT2-218ENST00000555213 PTPRUQ92729 1446 aa15.57■□□□□ 0.08
SHMT2-218ENST00000555213 LRRC7Q96NW7 1537 aa15.57■□□□□ 0.08
SHMT2-218ENST00000555213 STRCP1A6NGW2 1772 aa15.57■□□□□ 0.08
SHMT2-218ENST00000555213 PROSER2Q86WR7 435 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-218ENST00000555213 YTHDC2Q9H6S0 1430 aaKnown RBP15.56■□□□□ 0.08
SHMT2-218ENST00000555213 ADGRB1O14514 1584 aa15.55■□□□□ 0.08
SHMT2-218ENST00000555213 TECPR2O15040 1411 aa15.55■□□□□ 0.08
SHMT2-218ENST00000555213 TMEM94Q12767 1356 aa15.54■□□□□ 0.08
SHMT2-218ENST00000555213 ABCC11Q96J66 1382 aa15.54■□□□□ 0.08
SHMT2-218ENST00000555213 TMEM132EQ6IEE7 984 aa15.54■□□□□ 0.08
SHMT2-218ENST00000555213 NCOA3Q9Y6Q9 1424 aa15.53■□□□□ 0.08
SHMT2-218ENST00000555213 ROCK2O75116 1388 aaKnown RBP15.53■□□□□ 0.08
SHMT2-218ENST00000555213 C14orf37Q86TY3 774 aa15.53■□□□□ 0.08
SHMT2-218ENST00000555213 STK26Q9P289 416 aa15.53■□□□□ 0.08
SHMT2-218ENST00000555213 KNDC1Q76NI1 1749 aa15.53■□□□□ 0.08
SHMT2-218ENST00000555213 TRPM1Q7Z4N2 1603 aa15.52■□□□□ 0.08
SHMT2-218ENST00000555213 RALGAPBQ86X10 1494 aa15.52■□□□□ 0.07
SHMT2-218ENST00000555213 MSH6P52701 1360 aa15.51■□□□□ 0.07
SHMT2-218ENST00000555213 ROBO2Q9HCK4 1378 aa15.51■□□□□ 0.07
SHMT2-218ENST00000555213 DLC1Q96QB1 1528 aa15.51■□□□□ 0.07
SHMT2-218ENST00000555213 FAM135BQ49AJ0 1406 aa15.5■□□□□ 0.07
SHMT2-218ENST00000555213 NBPF8Q3BBV2 869 aa15.48■□□□□ 0.07
SHMT2-218ENST00000555213 ADGRL3Q9HAR2 1447 aa15.48■□□□□ 0.07
SHMT2-218ENST00000555213 EIF3AQ14152 1382 aaKnown RBP15.48■□□□□ 0.07
SHMT2-218ENST00000555213 NBPF1Q3BBV0 1214 aa15.47■□□□□ 0.07
SHMT2-218ENST00000555213 SIRT1Q96EB6 747 aa15.47■□□□□ 0.07
SHMT2-218ENST00000555213 RBM33Q96EV2 1170 aaKnown RBP15.47■□□□□ 0.07
SHMT2-218ENST00000555213 POGKQ9P215 609 aa15.47■□□□□ 0.07
SHMT2-218ENST00000555213 TRAK1Q9UPV9 953 aa15.47■□□□□ 0.07
SHMT2-218ENST00000555213 GPRASP1Q5JY77 1395 aa15.47■□□□□ 0.07
SHMT2-218ENST00000555213 DCCP43146 1447 aa15.46■□□□□ 0.07
SHMT2-218ENST00000555213 PRAM1Q96QH2 718 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms