RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 TMF1P82094 1093 aa15.91■□□□□ 0.14
SHMT2-212ENST00000554467 NOS1P29475 1434 aa15.91■□□□□ 0.14
SHMT2-212ENST00000554467 NEFLP07196 543 aa15.91■□□□□ 0.14
SHMT2-212ENST00000554467 CC2D1BQ5T0F9 858 aaKnown RBP15.91■□□□□ 0.14
SHMT2-212ENST00000554467 PANK3Q9H999 370 aa15.9■□□□□ 0.14
SHMT2-212ENST00000554467 GLI2P10070 1586 aa15.9■□□□□ 0.14
SHMT2-212ENST00000554467 LMTK2Q8IWU2 1503 aa15.9■□□□□ 0.14
SHMT2-212ENST00000554467 KIF1BO60333 1816 aa15.9■□□□□ 0.14
SHMT2-212ENST00000554467 COL17A1Q9UMD9 1497 aaPredicted RBP15.89■□□□□ 0.13
SHMT2-212ENST00000554467 FBXO31Q5XUX0 539 aaPredicted RBP15.89■□□□□ 0.13
SHMT2-212ENST00000554467 TMEM132EQ6IEE7 984 aa15.89■□□□□ 0.13
SHMT2-212ENST00000554467 TMC1Q8TDI8 760 aa15.88■□□□□ 0.13
SHMT2-212ENST00000554467 SIGLEC1Q9BZZ2 1709 aa15.87■□□□□ 0.13
SHMT2-212ENST00000554467 LAMC1P11047 1609 aa15.86■□□□□ 0.13
SHMT2-212ENST00000554467 IDI1Q13907 227 aa15.86■□□□□ 0.13
SHMT2-212ENST00000554467 CAMSAP1Q5T5Y3 1602 aa15.86■□□□□ 0.13
SHMT2-212ENST00000554467 TRAK1Q9UPV9 953 aa15.86■□□□□ 0.13
SHMT2-212ENST00000554467 SCAF11Q99590 1463 aaKnown RBP15.85■□□□□ 0.13
SHMT2-212ENST00000554467 PER1O15534 1290 aaPredicted RBP15.85■□□□□ 0.13
SHMT2-212ENST00000554467 IRX6P78412 446 aaPredicted RBP15.84■□□□□ 0.13
SHMT2-212ENST00000554467 ADGRB3O60242 1522 aa15.83■□□□□ 0.12
SHMT2-212ENST00000554467 IQGAP1P46940 1657 aa15.83■□□□□ 0.12
SHMT2-212ENST00000554467 SYNMO15061 1565 aa15.82■□□□□ 0.12
SHMT2-212ENST00000554467 STAC3Q96MF2 364 aa15.82■□□□□ 0.12
SHMT2-212ENST00000554467 KTN1Q86UP2 1357 aaKnown RBP15.81■□□□□ 0.12
SHMT2-212ENST00000554467 MYOM2P54296 1465 aa15.81■□□□□ 0.12
SHMT2-212ENST00000554467 MYBBP1AQ9BQG0 1328 aaKnown RBP15.8■□□□□ 0.12
SHMT2-212ENST00000554467 PNISRQ8TF01 805 aaKnown RBP15.8■□□□□ 0.12
SHMT2-212ENST00000554467 SAFB2Q14151 953 aaKnown RBP eCLIP15.8■□□□□ 0.12
SHMT2-212ENST00000554467 SALL2Q9Y467 1007 aaPredicted RBP15.8■□□□□ 0.12
SHMT2-212ENST00000554467 RALBP1Q15311 655 aa15.79■□□□□ 0.12
SHMT2-212ENST00000554467 IFT172Q9UG01 1749 aa15.79■□□□□ 0.12
SHMT2-212ENST00000554467 EIF3AQ14152 1382 aaKnown RBP15.78■□□□□ 0.12
SHMT2-212ENST00000554467 KIF13AQ9H1H9 1805 aa15.78■□□□□ 0.12
SHMT2-212ENST00000554467 STK26Q9P289 416 aa15.78■□□□□ 0.12
SHMT2-212ENST00000554467 ZMYM4Q5VZL5 1548 aa15.77■□□□□ 0.12
SHMT2-212ENST00000554467 C14orf93Q9H972 538 aaKnown RBP15.77■□□□□ 0.11
SHMT2-212ENST00000554467 STAG3Q9UJ98 1225 aa15.77■□□□□ 0.11
SHMT2-212ENST00000554467 KNSTRNQ9Y448 316 aa15.76■□□□□ 0.11
SHMT2-212ENST00000554467 PIK3C2GO75747 1445 aa15.76■□□□□ 0.11
SHMT2-212ENST00000554467 PPLO60437 1756 aa15.76■□□□□ 0.11
SHMT2-212ENST00000554467 PARD3Q8TEW0 1356 aa15.75■□□□□ 0.11
SHMT2-212ENST00000554467 NEURL4Q96JN8 1562 aa15.75■□□□□ 0.11
SHMT2-212ENST00000554467 NRXN1Q9ULB1 1477 aa15.75■□□□□ 0.11
SHMT2-212ENST00000554467 ZBED9Q6R2W3 1325 aa15.75■□□□□ 0.11
SHMT2-212ENST00000554467 CENPJQ9HC77 1338 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-212ENST00000554467 NLRP13Q86W25 1043 aa15.74■□□□□ 0.11
SHMT2-212ENST00000554467 VGFO15240 615 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-212ENST00000554467 PLPPR3Q6T4P5 718 aa15.74■□□□□ 0.11
SHMT2-212ENST00000554467 SLC52A1Q9NWF4 448 aa15.74■□□□□ 0.11
SHMT2-212ENST00000554467 ARHGAP31Q2M1Z3 1444 aa15.73■□□□□ 0.11
SHMT2-212ENST00000554467 MYO5BQ9ULV0 1848 aa15.73■□□□□ 0.11
SHMT2-212ENST00000554467 KIAA1210Q9ULL0 1709 aa15.73■□□□□ 0.11
SHMT2-212ENST00000554467 CDCA8Q53HL2 280 aa15.73■□□□□ 0.11
SHMT2-212ENST00000554467 RPGRIP1LQ68CZ1 1315 aa15.73■□□□□ 0.11
SHMT2-212ENST00000554467 BRD4O60885 1362 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-212ENST00000554467 ERVK-7P63135 1459 aa15.72■□□□□ 0.11
SHMT2-212ENST00000554467 ANO8Q9HCE9 1232 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-212ENST00000554467 PIK3C2BO00750 1634 aa15.72■□□□□ 0.11
SHMT2-212ENST00000554467 PREX1Q8TCU6 1659 aa15.72■□□□□ 0.11
SHMT2-212ENST00000554467 NEXMIFQ5QGS0 1516 aa15.71■□□□□ 0.11
SHMT2-212ENST00000554467 ZC3H13Q5T200 1668 aaKnown RBP15.71■□□□□ 0.1
SHMT2-212ENST00000554467 CLTCQ00610 1675 aaKnown RBP15.7■□□□□ 0.1
SHMT2-212ENST00000554467 FANCIQ9NVI1 1328 aa15.7■□□□□ 0.1
SHMT2-212ENST00000554467 AMER1Q5JTC6 1135 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-212ENST00000554467 ESF1Q9H501 851 aaKnown RBP15.7■□□□□ 0.1
SHMT2-212ENST00000554467 ADGRB1O14514 1584 aa15.69■□□□□ 0.1
SHMT2-212ENST00000554467 CARD14Q9BXL6 1004 aa15.69■□□□□ 0.1
SHMT2-212ENST00000554467 SLC12A5Q9H2X9 1139 aa15.69■□□□□ 0.1
SHMT2-212ENST00000554467 TRHP20396 242 aaPredicted RBP15.68■□□□□ 0.1
SHMT2-212ENST00000554467 MYOM1P52179 1685 aa15.67■□□□□ 0.1
SHMT2-212ENST00000554467 KDM5AP29375 1690 aaKnown RBP15.66■□□□□ 0.1
SHMT2-212ENST00000554467 DEKP35659 375 aaKnown RBP15.66■□□□□ 0.1
SHMT2-212ENST00000554467 TNNT2P45379 298 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-212ENST00000554467 LRPPRCP42704 1394 aaKnown RBP15.66■□□□□ 0.1
SHMT2-212ENST00000554467 PPP2R1AP30153 589 aa15.66■□□□□ 0.1
SHMT2-212ENST00000554467 CABP2Q9NPB3 220 aa15.66■□□□□ 0.1
SHMT2-212ENST00000554467 TMEM131LA2VDJ0 1609 aa15.66■□□□□ 0.1
SHMT2-212ENST00000554467 SETBP1Q9Y6X0 1596 aa15.64■□□□□ 0.09
SHMT2-212ENST00000554467 ARHGEF40Q8TER5 1519 aa15.64■□□□□ 0.09
SHMT2-212ENST00000554467 MINK1Q8N4C8 1332 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-212ENST00000554467 AGLP35573 1532 aa15.63■□□□□ 0.09
SHMT2-212ENST00000554467 QRICH2Q9H0J4 1663 aa15.63■□□□□ 0.09
SHMT2-212ENST00000554467 CEBPAP49715 358 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-212ENST00000554467 PRAM1Q96QH2 718 aa15.62■□□□□ 0.09
SHMT2-212ENST00000554467 ZMYM3Q14202 1370 aa15.62■□□□□ 0.09
SHMT2-212ENST00000554467 ASXL1Q8IXJ9 1541 aa15.62■□□□□ 0.09
SHMT2-212ENST00000554467 ADAMTS8Q9UP79 889 aa15.62■□□□□ 0.09
SHMT2-212ENST00000554467 ERICH6Q7L0X2 663 aa15.61■□□□□ 0.09
SHMT2-212ENST00000554467 POGKQ9P215 609 aa15.61■□□□□ 0.09
SHMT2-212ENST00000554467 REREQ9P2R6 1566 aa15.6■□□□□ 0.09
SHMT2-212ENST00000554467 SRPK2P78362 688 aaKnown RBP15.6■□□□□ 0.09
SHMT2-212ENST00000554467 MYO3AQ8NEV4 1616 aa15.59■□□□□ 0.09
SHMT2-212ENST00000554467 PPP6R1Q9UPN7 881 aa15.59■□□□□ 0.09
SHMT2-212ENST00000554467 SBNO2Q9Y2G9 1366 aa15.59■□□□□ 0.09
SHMT2-212ENST00000554467 NUDCQ9Y266 331 aa15.59■□□□□ 0.09
SHMT2-212ENST00000554467 NSD3Q9BZ95 1437 aa15.58■□□□□ 0.09
SHMT2-212ENST00000554467 CDCA7LQ96GN5 454 aa15.58■□□□□ 0.09
SHMT2-212ENST00000554467 WAPLQ7Z5K2 1190 aa15.58■□□□□ 0.08
SHMT2-212ENST00000554467 EVC2Q86UK5 1308 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms