RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 TESK2Q96S53 571 aa36.29■■■■□ 3.4
CCDC88C-205ENST00000553403 PIK3C2BO00750 1634 aa36.28■■■■□ 3.4
CCDC88C-205ENST00000553403 SCAF11Q99590 1463 aaKnown RBP36.27■■■■□ 3.4
CCDC88C-205ENST00000553403 PPP6R1Q9UPN7 881 aa36.26■■■■□ 3.39
CCDC88C-205ENST00000553403 SYNMO15061 1565 aa36.25■■■■□ 3.39
CCDC88C-205ENST00000553403 RPGRIP1LQ68CZ1 1315 aa36.25■■■■□ 3.39
CCDC88C-205ENST00000553403 CFAP65Q6ZU64 1925 aaKnown RBP36.25■■■■□ 3.39
CCDC88C-205ENST00000553403 ADGRF5Q8IZF2 1346 aa36.21■■■■□ 3.39
CCDC88C-205ENST00000553403 PPLO60437 1756 aa36.2■■■■□ 3.39
CCDC88C-205ENST00000553403 TMF1P82094 1093 aa36.19■■■■□ 3.38
CCDC88C-205ENST00000553403 ARHGEF40Q8TER5 1519 aa36.19■■■■□ 3.38
CCDC88C-205ENST00000553403 CHGAP10645 457 aaKnown RBP36.18■■■■□ 3.38
CCDC88C-205ENST00000553403 EIF3AQ14152 1382 aaKnown RBP36.17■■■■□ 3.38
CCDC88C-205ENST00000553403 DISP3Q9P2K9 1392 aa36.17■■■■□ 3.38
CCDC88C-205ENST00000553403 SLC52A1Q9NWF4 448 aa36.15■■■■□ 3.38
CCDC88C-205ENST00000553403 PREX1Q8TCU6 1659 aa36.14■■■■□ 3.38
CCDC88C-205ENST00000553403 CFAP70Q5T0N1 1121 aa36.13■■■■□ 3.37
CCDC88C-205ENST00000553403 SETBP1Q9Y6X0 1596 aa36.12■■■■□ 3.37
CCDC88C-205ENST00000553403 PIK3C2GO75747 1445 aa36.1■■■■□ 3.37
CCDC88C-205ENST00000553403 KTN1Q86UP2 1357 aaKnown RBP36.1■■■■□ 3.37
CCDC88C-205ENST00000553403 SLC24A1O60721 1099 aa36.07■■■■□ 3.36
CCDC88C-205ENST00000553403 CCDC184Q52MB2 194 aa36.06■■■■□ 3.36
CCDC88C-205ENST00000553403 IDI1Q13907 227 aa36.05■■■■□ 3.36
CCDC88C-205ENST00000553403 MRS2Q9HD23 443 aa36.05■■■■□ 3.36
CCDC88C-205ENST00000553403 CDCA8Q53HL2 280 aa36.04■■■■□ 3.36
CCDC88C-205ENST00000553403 NEXMIFQ5QGS0 1516 aa36.04■■■■□ 3.36
CCDC88C-205ENST00000553403 ERVK-7P63135 1459 aa36.04■■■■□ 3.36
CCDC88C-205ENST00000553403 C14orf93Q9H972 538 aaKnown RBP36.03■■■■□ 3.36
CCDC88C-205ENST00000553403 ADAMTSL3P82987 1691 aa36.02■■■■□ 3.36
CCDC88C-205ENST00000553403 VGFO15240 615 aaPredicted RBP36■■■■□ 3.35
CCDC88C-205ENST00000553403 ZFYVE9O95405 1425 aa35.99■■■■□ 3.35
CCDC88C-205ENST00000553403 RALBP1Q15311 655 aa35.99■■■■□ 3.35
CCDC88C-205ENST00000553403 CLTCQ00610 1675 aaKnown RBP35.99■■■■□ 3.35
CCDC88C-205ENST00000553403 MYO3AQ8NEV4 1616 aa35.98■■■■□ 3.35
CCDC88C-205ENST00000553403 TMEM131LA2VDJ0 1609 aa35.97■■■■□ 3.35
CCDC88C-205ENST00000553403 PER1O15534 1290 aaPredicted RBP35.96■■■■□ 3.35
CCDC88C-205ENST00000553403 MLECQ14165 292 aa35.94■■■■□ 3.34
CCDC88C-205ENST00000553403 ADGRB1O14514 1584 aa35.94■■■■□ 3.34
CCDC88C-205ENST00000553403 PTPRMP28827 1452 aa35.93■■■■□ 3.34
CCDC88C-205ENST00000553403 SBNO2Q9Y2G9 1366 aa35.92■■■■□ 3.34
CCDC88C-205ENST00000553403 SPATA31D1Q6ZQQ2 1576 aa35.92■■■■□ 3.34
CCDC88C-205ENST00000553403 FBXO31Q5XUX0 539 aaPredicted RBP35.91■■■■□ 3.34
CCDC88C-205ENST00000553403 MYBBP1AQ9BQG0 1328 aaKnown RBP35.89■■■■□ 3.34
CCDC88C-205ENST00000553403 HNRNPUQ00839 825 aaKnown RBP eCLIP35.89■■■■□ 3.34
CCDC88C-205ENST00000553403 PANK3Q9H999 370 aa35.89■■■■□ 3.34
CCDC88C-205ENST00000553403 PARD3Q8TEW0 1356 aa35.87■■■■□ 3.33
CCDC88C-205ENST00000553403 MYO5BQ9ULV0 1848 aa35.87■■■■□ 3.33
CCDC88C-205ENST00000553403 KDM5AP29375 1690 aaKnown RBP35.85■■■■□ 3.33
CCDC88C-205ENST00000553403 BRD4O60885 1362 aaPredicted RBP35.85■■■■□ 3.33
CCDC88C-205ENST00000553403 FAM9BQ8IZU0 186 aa35.84■■■■□ 3.33
CCDC88C-205ENST00000553403 RIMS1Q86UR5 1692 aaKnown RBP35.83■■■■□ 3.33
CCDC88C-205ENST00000553403 CNGB1Q14028 1251 aaPredicted RBP35.83■■■■□ 3.33
CCDC88C-205ENST00000553403 CENPJQ9HC77 1338 aaPredicted RBP35.83■■■■□ 3.33
CCDC88C-205ENST00000553403 PLPPR3Q6T4P5 718 aa35.82■■■■□ 3.33
CCDC88C-205ENST00000553403 MYOM1P52179 1685 aa35.78■■■■□ 3.32
CCDC88C-205ENST00000553403 ESF1Q9H501 851 aaKnown RBP35.78■■■■□ 3.32
CCDC88C-205ENST00000553403 TMC1Q8TDI8 760 aa35.77■■■■□ 3.32
CCDC88C-205ENST00000553403 TRAK1Q9UPV9 953 aa35.76■■■■□ 3.32
CCDC88C-205ENST00000553403 NUTM2DQ5VT03 806 aaPredicted RBP35.75■■■■□ 3.31
CCDC88C-205ENST00000553403 ZMYM3Q14202 1370 aa35.75■■■■□ 3.31
CCDC88C-205ENST00000553403 TMEM132EQ6IEE7 984 aa35.75■■■■□ 3.31
CCDC88C-205ENST00000553403 QRICH2Q9H0J4 1663 aa35.73■■■■□ 3.31
CCDC88C-205ENST00000553403 NLRP13Q86W25 1043 aa35.73■■■■□ 3.31
CCDC88C-205ENST00000553403 PNISRQ8TF01 805 aaKnown RBP35.72■■■■□ 3.31
CCDC88C-205ENST00000553403 STAG3Q9UJ98 1225 aa35.72■■■■□ 3.31
CCDC88C-205ENST00000553403 FER1L4A9Z1Z3 1794 aa35.72■■■■□ 3.31
CCDC88C-205ENST00000553403 A2ML1A8K2U0 1454 aa35.72■■■■□ 3.31
CCDC88C-205ENST00000553403 KNSTRNQ9Y448 316 aa35.69■■■■□ 3.3
CCDC88C-205ENST00000553403 ZBED9Q6R2W3 1325 aa35.69■■■■□ 3.3
CCDC88C-205ENST00000553403 ARHGEF28Q8N1W1 1705 aaKnown RBP35.68■■■■□ 3.3
CCDC88C-205ENST00000553403 NPC1L1Q9UHC9 1359 aa35.67■■■■□ 3.3
CCDC88C-205ENST00000553403 ASXL1Q8IXJ9 1541 aa35.66■■■■□ 3.3
CCDC88C-205ENST00000553403 CC2D1BQ5T0F9 858 aaKnown RBP35.65■■■■□ 3.3
CCDC88C-205ENST00000553403 LRPPRCP42704 1394 aaKnown RBP35.64■■■■□ 3.3
CCDC88C-205ENST00000553403 PUS7Q96PZ0 661 aaKnown RBP35.63■■■■□ 3.29
CCDC88C-205ENST00000553403 AMER1Q5JTC6 1135 aaPredicted RBP35.62■■■■□ 3.29
CCDC88C-205ENST00000553403 RIMS2Q9UQ26 1411 aa35.61■■■■□ 3.29
CCDC88C-205ENST00000553403 ALKQ9UM73 1620 aa35.6■■■■□ 3.29
CCDC88C-205ENST00000553403 TNRQ92752 1358 aa35.58■■■■□ 3.29
CCDC88C-205ENST00000553403 ABCF1Q8NE71 845 aaKnown RBP eCLIP35.54■■■■□ 3.28
CCDC88C-205ENST00000553403 YTHDC2Q9H6S0 1430 aaKnown RBP35.54■■■■□ 3.28
CCDC88C-205ENST00000553403 EVC2Q86UK5 1308 aa35.53■■■■□ 3.28
CCDC88C-205ENST00000553403 SUPT16HQ9Y5B9 1047 aaKnown RBP35.52■■■■□ 3.28
CCDC88C-205ENST00000553403 CEBPAP49715 358 aaPredicted RBP35.52■■■■□ 3.28
CCDC88C-205ENST00000553403 INSRP06213 1382 aa35.51■■■■□ 3.28
CCDC88C-205ENST00000553403 TULP4Q9NRJ4 1543 aa35.5■■■■□ 3.27
CCDC88C-205ENST00000553403 LMTK3Q96Q04 1460 aa35.48■■■■□ 3.27
CCDC88C-205ENST00000553403 HDGFP51858 240 aaKnown RBP35.46■■■■□ 3.27
CCDC88C-205ENST00000553403 STK26Q9P289 416 aa35.46■■■■□ 3.27
CCDC88C-205ENST00000553403 CARD14Q9BXL6 1004 aa35.45■■■■□ 3.27
CCDC88C-205ENST00000553403 SETD1AO15047 1707 aaKnown RBP35.44■■■■□ 3.26
CCDC88C-205ENST00000553403 DLC1Q96QB1 1528 aa35.44■■■■□ 3.26
CCDC88C-205ENST00000553403 PPP2R1AP30153 589 aa35.43■■■■□ 3.26
CCDC88C-205ENST00000553403 NEFLP07196 543 aa35.43■■■■□ 3.26
CCDC88C-205ENST00000553403 NLRP1Q9C000 1473 aa35.41■■■■□ 3.26
CCDC88C-205ENST00000553403 UBR1Q8IWV7 1749 aa35.41■■■■□ 3.26
CCDC88C-205ENST00000553403 HSPA2P54652 639 aa35.4■■■■□ 3.26
CCDC88C-205ENST00000553403 NRXN3Q9Y4C0 1643 aa35.38■■■■□ 3.25
CCDC88C-205ENST00000553403 PRAM1Q96QH2 718 aa35.37■■■■□ 3.25
CCDC88C-205ENST00000553403 NINLQ9Y2I6 1382 aa35.37■■■■□ 3.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms