RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 RIMS2Q9UQ26 1411 aa23.76■■□□□ 1.39
CHMP1A-209ENST00000550872 SCAF11Q99590 1463 aaKnown RBP23.76■■□□□ 1.39
CHMP1A-209ENST00000550872 POLR1AO95602 1720 aaPredicted RBP23.76■■□□□ 1.39
CHMP1A-209ENST00000550872 PPP1R15AO75807 674 aaPredicted RBP23.75■■□□□ 1.39
CHMP1A-209ENST00000550872 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.75■■□□□ 1.39
CHMP1A-209ENST00000550872 NUTM2DQ5VT03 806 aaPredicted RBP23.74■■□□□ 1.39
CHMP1A-209ENST00000550872 NPHP4O75161 1426 aaPredicted RBP23.74■■□□□ 1.39
CHMP1A-209ENST00000550872 NEURL4Q96JN8 1562 aa23.73■■□□□ 1.39
CHMP1A-209ENST00000550872 RGL3Q3MIN7 710 aa23.72■■□□□ 1.39
CHMP1A-209ENST00000550872 ZFYVE9O95405 1425 aa23.72■■□□□ 1.39
CHMP1A-209ENST00000550872 MED14O60244 1454 aa23.72■■□□□ 1.39
CHMP1A-209ENST00000550872 IQSEC2Q5JU85 1478 aa23.72■■□□□ 1.39
CHMP1A-209ENST00000550872 LTBP4Q8N2S1 1624 aa23.71■■□□□ 1.39
CHMP1A-209ENST00000550872 DHX57Q6P158 1386 aaKnown RBP23.71■■□□□ 1.39
CHMP1A-209ENST00000550872 BCANQ96GW7 911 aa23.71■■□□□ 1.39
CHMP1A-209ENST00000550872 SENP3Q9H4L4 574 aaPredicted RBP23.69■■□□□ 1.38
CHMP1A-209ENST00000550872 RPGRIP1LQ68CZ1 1315 aa23.68■■□□□ 1.38
CHMP1A-209ENST00000550872 SPATA31E1Q6ZUB1 1445 aa23.67■■□□□ 1.38
CHMP1A-209ENST00000550872 IQGAP1P46940 1657 aa23.66■■□□□ 1.38
CHMP1A-209ENST00000550872 PLEKHG1Q9ULL1 1385 aa23.65■■□□□ 1.38
CHMP1A-209ENST00000550872 VGFO15240 615 aaPredicted RBP23.63■■□□□ 1.37
CHMP1A-209ENST00000550872 SLC26A8Q96RN1 970 aa23.63■■□□□ 1.37
CHMP1A-209ENST00000550872 NEXMIFQ5QGS0 1516 aa23.63■■□□□ 1.37
CHMP1A-209ENST00000550872 ZNF335Q9H4Z2 1342 aaPredicted RBP23.59■■□□□ 1.37
CHMP1A-209ENST00000550872 SIN3AQ96ST3 1273 aa23.59■■□□□ 1.37
CHMP1A-209ENST00000550872 NEUROD1Q13562 356 aa23.57■■□□□ 1.36
CHMP1A-209ENST00000550872 PPLO60437 1756 aa23.56■■□□□ 1.36
CHMP1A-209ENST00000550872 TBX22Q9Y458 520 aa23.56■■□□□ 1.36
CHMP1A-209ENST00000550872 ADGRF5Q8IZF2 1346 aa23.55■■□□□ 1.36
CHMP1A-209ENST00000550872 ADAMTS13Q76LX8 1427 aa23.53■■□□□ 1.36
CHMP1A-209ENST00000550872 DCAF11Q8TEB1 546 aa23.53■■□□□ 1.36
CHMP1A-209ENST00000550872 KDM2AQ9Y2K7 1162 aa23.52■■□□□ 1.36
CHMP1A-209ENST00000550872 SETBP1Q9Y6X0 1596 aa23.5■■□□□ 1.35
CHMP1A-209ENST00000550872 IFT172Q9UG01 1749 aa23.5■■□□□ 1.35
CHMP1A-209ENST00000550872 KCNA6P17658 529 aa23.49■■□□□ 1.35
CHMP1A-209ENST00000550872 DISP3Q9P2K9 1392 aa23.49■■□□□ 1.35
CHMP1A-209ENST00000550872 STAC3Q96MF2 364 aa23.48■■□□□ 1.35
CHMP1A-209ENST00000550872 NRXN3Q9Y4C0 1643 aa23.48■■□□□ 1.35
CHMP1A-209ENST00000550872 DIP2AQ14689 1571 aa23.47■■□□□ 1.35
CHMP1A-209ENST00000550872 MYOM2P54296 1465 aa23.45■■□□□ 1.34
CHMP1A-209ENST00000550872 CCER1Q8TC90 406 aaPredicted RBP23.45■■□□□ 1.34
CHMP1A-209ENST00000550872 PIK3R4Q99570 1358 aa23.44■■□□□ 1.34
CHMP1A-209ENST00000550872 L3MBTL2Q969R5 705 aa23.44■■□□□ 1.34
CHMP1A-209ENST00000550872 METP08581 1390 aa23.43■■□□□ 1.34
CHMP1A-209ENST00000550872 UBAP1LF5GYI3 381 aa23.43■■□□□ 1.34
CHMP1A-209ENST00000550872 ALKQ9UM73 1620 aa23.43■■□□□ 1.34
CHMP1A-209ENST00000550872 AMOTL2Q9Y2J4 779 aa23.42■■□□□ 1.34
CHMP1A-209ENST00000550872 CPS1P31327 1500 aa23.42■■□□□ 1.34
CHMP1A-209ENST00000550872 STRCP1A6NGW2 1772 aa23.42■■□□□ 1.34
CHMP1A-209ENST00000550872 PIK3C2GO75747 1445 aa23.42■■□□□ 1.34
CHMP1A-209ENST00000550872 NRXN1Q9ULB1 1477 aa23.41■■□□□ 1.34
CHMP1A-209ENST00000550872 CHD2O14647 1828 aaKnown RBP23.4■■□□□ 1.34
CHMP1A-209ENST00000550872 CFAP70Q5T0N1 1121 aa23.4■■□□□ 1.34
CHMP1A-209ENST00000550872 PROSER2Q86WR7 435 aaPredicted RBP23.4■■□□□ 1.34
CHMP1A-209ENST00000550872 C14orf93Q9H972 538 aaKnown RBP23.4■■□□□ 1.34
CHMP1A-209ENST00000550872 CLSPNQ9HAW4 1339 aa23.39■■□□□ 1.34
CHMP1A-209ENST00000550872 PTPRUQ92729 1446 aa23.38■■□□□ 1.33
CHMP1A-209ENST00000550872 ILDR2Q71H61 639 aa23.37■■□□□ 1.33
CHMP1A-209ENST00000550872 TONSLQ96HA7 1378 aa23.37■■□□□ 1.33
CHMP1A-209ENST00000550872 NWD1Q149M9 1564 aa23.36■■□□□ 1.33
CHMP1A-209ENST00000550872 TMEM132EQ6IEE7 984 aa23.36■■□□□ 1.33
CHMP1A-209ENST00000550872 LRRC7Q96NW7 1537 aa23.35■■□□□ 1.33
CHMP1A-209ENST00000550872 SETD1AO15047 1707 aaKnown RBP23.35■■□□□ 1.33
CHMP1A-209ENST00000550872 NKTRP30414 1462 aaKnown RBP23.34■■□□□ 1.33
CHMP1A-209ENST00000550872 SOCS7O14512 581 aa23.33■■□□□ 1.33
CHMP1A-209ENST00000550872 RBM33Q96EV2 1170 aaKnown RBP23.33■■□□□ 1.33
CHMP1A-209ENST00000550872 TMEM94Q12767 1356 aa23.32■■□□□ 1.32
CHMP1A-209ENST00000550872 STK26Q9P289 416 aa23.32■■□□□ 1.32
CHMP1A-209ENST00000550872 PRAG1Q86YV5 1406 aa23.3■■□□□ 1.32
CHMP1A-209ENST00000550872 LAMC1P11047 1609 aa23.3■■□□□ 1.32
CHMP1A-209ENST00000550872 TOM1O60784 492 aa23.29■■□□□ 1.32
CHMP1A-209ENST00000550872 XRN1Q8IZH2 1706 aaKnown RBP23.28■■□□□ 1.32
CHMP1A-209ENST00000550872 ASXL1Q8IXJ9 1541 aa23.28■■□□□ 1.32
CHMP1A-209ENST00000550872 LRPPRCP42704 1394 aaKnown RBP23.27■■□□□ 1.32
CHMP1A-209ENST00000550872 C14orf37Q86TY3 774 aa23.27■■□□□ 1.32
CHMP1A-209ENST00000550872 YTHDC2Q9H6S0 1430 aaKnown RBP23.26■■□□□ 1.31
CHMP1A-209ENST00000550872 ABCC11Q96J66 1382 aa23.26■■□□□ 1.31
CHMP1A-209ENST00000550872 ROBO2Q9HCK4 1378 aa23.24■■□□□ 1.31
CHMP1A-209ENST00000550872 NBPF1Q3BBV0 1214 aa23.23■■□□□ 1.31
CHMP1A-209ENST00000550872 NBPF8Q3BBV2 869 aa23.23■■□□□ 1.31
CHMP1A-209ENST00000550872 TIMELESSQ9UNS1 1208 aa23.23■■□□□ 1.31
CHMP1A-209ENST00000550872 XIRP1Q702N8 1843 aaKnown RBP23.23■■□□□ 1.31
CHMP1A-209ENST00000550872 PTCH1Q13635 1447 aa23.22■■□□□ 1.31
CHMP1A-209ENST00000550872 NCOA3Q9Y6Q9 1424 aa23.22■■□□□ 1.31
CHMP1A-209ENST00000550872 ADGRB1O14514 1584 aa23.21■■□□□ 1.31
CHMP1A-209ENST00000550872 KIAA1210Q9ULL0 1709 aa23.2■■□□□ 1.3
CHMP1A-209ENST00000550872 TECPR2O15040 1411 aa23.2■■□□□ 1.3
CHMP1A-209ENST00000550872 MSH6P52701 1360 aa23.2■■□□□ 1.3
CHMP1A-209ENST00000550872 WAPLQ7Z5K2 1190 aa23.2■■□□□ 1.3
CHMP1A-209ENST00000550872 C19orf44Q9H6X5 657 aa23.2■■□□□ 1.3
CHMP1A-209ENST00000550872 TRAK1Q9UPV9 953 aa23.2■■□□□ 1.3
CHMP1A-209ENST00000550872 SIRT1Q96EB6 747 aa23.19■■□□□ 1.3
CHMP1A-209ENST00000550872 HSPA1LP34931 641 aa23.18■■□□□ 1.3
CHMP1A-209ENST00000550872 PIP4K2BP78356 416 aa23.18■■□□□ 1.3
CHMP1A-209ENST00000550872 SCAF1Q9H7N4 1312 aaKnown RBP23.16■■□□□ 1.3
CHMP1A-209ENST00000550872 POGKQ9P215 609 aa23.16■■□□□ 1.3
CHMP1A-209ENST00000550872 KNDC1Q76NI1 1749 aa23.16■■□□□ 1.3
CHMP1A-209ENST00000550872 PRAM1Q96QH2 718 aa23.15■■□□□ 1.3
CHMP1A-209ENST00000550872 ROCK2O75116 1388 aaKnown RBP23.14■■□□□ 1.3
CHMP1A-209ENST00000550872 PLEKHH1Q9ULM0 1364 aa23.14■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms