RNA–Protein interactions for RNA: ENST00000546304.1

PRKDC-211, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-211ENST00000546304 LARP6Q9BRS8 491 aaKnown RBP9.96□□□□□ -0.82
PRKDC-211ENST00000546304 CDK11AQ9UQ88 783 aaPredicted RBP9.96□□□□□ -0.82
PRKDC-211ENST00000546304 MTUS2Q5JR59 1369 aa9.96□□□□□ -0.82
PRKDC-211ENST00000546304 LRRC9Q6ZRR7 1453 aa9.96□□□□□ -0.82
PRKDC-211ENST00000546304 DDX27Q96GQ7 796 aaKnown RBP9.95□□□□□ -0.82
PRKDC-211ENST00000546304 PCDHGA4Q9Y5G9 962 aa9.95□□□□□ -0.82
PRKDC-211ENST00000546304 CFAP74Q9C0B2 1584 aa9.95□□□□□ -0.82
PRKDC-211ENST00000546304 PLEKHD1A6NEE1 506 aa9.94□□□□□ -0.82
PRKDC-211ENST00000546304 ARAP3Q8WWN8 1544 aa9.93□□□□□ -0.82
PRKDC-211ENST00000546304 CDC42BPBQ9Y5S2 1711 aa9.93□□□□□ -0.82
PRKDC-211ENST00000546304 FAM205CA6NFA0 338 aa9.92□□□□□ -0.82
PRKDC-211ENST00000546304 FAM69CQ0P6D2 419 aa9.92□□□□□ -0.82
PRKDC-211ENST00000546304 CDAN1Q8IWY9 1227 aa9.92□□□□□ -0.82
PRKDC-211ENST00000546304 KHSRPQ92945 711 aaKnown RBP eCLIP9.92□□□□□ -0.821e-6■■■■■ 27.1
PRKDC-211ENST00000546304 HS3ST6Q96QI5 342 aa9.92□□□□□ -0.82
PRKDC-211ENST00000546304 NCOA2Q15596 1464 aa9.91□□□□□ -0.82
PRKDC-211ENST00000546304 TEX14Q8IWB6 1497 aa9.91□□□□□ -0.82
PRKDC-211ENST00000546304 ERBB3P21860 1342 aa9.91□□□□□ -0.82
PRKDC-211ENST00000546304 POTEB3A0JP26 581 aa9.91□□□□□ -0.82
PRKDC-211ENST00000546304 POTEBQ6S5H4 581 aa9.91□□□□□ -0.82
PRKDC-211ENST00000546304 KCNH8Q96L42 1107 aa9.91□□□□□ -0.82
PRKDC-211ENST00000546304 CD109Q6YHK3 1445 aa9.9□□□□□ -0.82
PRKDC-211ENST00000546304 KDM4FA0A1W2PPD8 638 aa9.9□□□□□ -0.82
PRKDC-211ENST00000546304 OXER1Q8TDS5 423 aa9.9□□□□□ -0.82
PRKDC-211ENST00000546304 ARHGAP5Q13017 1502 aa9.9□□□□□ -0.82
PRKDC-211ENST00000546304 TBC1D12O60347 775 aa9.89□□□□□ -0.83
PRKDC-211ENST00000546304 FANCAO15360 1455 aa9.88□□□□□ -0.83
PRKDC-211ENST00000546304 NEO1Q92859 1461 aa9.88□□□□□ -0.83
PRKDC-211ENST00000546304 NUDT7P0C024 238 aa9.88□□□□□ -0.83
PRKDC-211ENST00000546304 ABCC1P33527 1531 aa9.87□□□□□ -0.83
PRKDC-211ENST00000546304 GPATCH8Q9UKJ3 1502 aaKnown RBP9.87□□□□□ -0.83
PRKDC-211ENST00000546304 KDM6BO15054 1643 aa9.87□□□□□ -0.83
PRKDC-211ENST00000546304 ZNF316A6NFI3 1004 aaPredicted RBP9.87□□□□□ -0.83
PRKDC-211ENST00000546304 KANK4Q5T7N3 995 aaPredicted RBP9.87□□□□□ -0.83
PRKDC-211ENST00000546304 PLCH2O75038 1416 aa9.87□□□□□ -0.83
PRKDC-211ENST00000546304 SAMD9LQ8IVG5 1584 aa9.87□□□□□ -0.83
PRKDC-211ENST00000546304 CCNB3Q8WWL7 1395 aa9.87□□□□□ -0.83
PRKDC-211ENST00000546304 VARS2Q5ST30 1063 aaKnown RBP9.86□□□□□ -0.83
PRKDC-211ENST00000546304 MYOM3Q5VTT5 1437 aa9.85□□□□□ -0.83
PRKDC-211ENST00000546304 CAMK2BQ13554 666 aa9.85□□□□□ -0.83
PRKDC-211ENST00000546304 RICTORQ6R327 1708 aa9.85□□□□□ -0.83
PRKDC-211ENST00000546304 FRMPD1Q5SYB0 1578 aa9.84□□□□□ -0.83
PRKDC-211ENST00000546304 SYCP2Q9BX26 1530 aa9.84□□□□□ -0.83
PRKDC-211ENST00000546304 ADGRL1O94910 1474 aa9.84□□□□□ -0.83
PRKDC-211ENST00000546304 UPF1Q92900 1129 aaKnown RBP eCLIP9.83□□□□□ -0.84
PRKDC-211ENST00000546304 LHX6Q9UPM6 363 aa9.83□□□□□ -0.84
PRKDC-211ENST00000546304 PHLDB1Q86UU1 1377 aa9.83□□□□□ -0.84
PRKDC-211ENST00000546304 CAMSAP2Q08AD1 1489 aa9.83□□□□□ -0.84
PRKDC-211ENST00000546304 PTPN23Q9H3S7 1636 aa9.82□□□□□ -0.84
PRKDC-211ENST00000546304 ZNF687Q8N1G0 1237 aa9.82□□□□□ -0.84
PRKDC-211ENST00000546304 EMILIN3Q9NT22 766 aa9.82□□□□□ -0.84
PRKDC-211ENST00000546304 FGD6Q6ZV73 1430 aa9.82□□□□□ -0.84
PRKDC-211ENST00000546304 AKNAQ7Z591 1439 aa9.82□□□□□ -0.84
PRKDC-211ENST00000546304 CROCC2H7BZ55 1655 aa9.81□□□□□ -0.84
PRKDC-211ENST00000546304 PLEKHH2Q8IVE3 1493 aa9.81□□□□□ -0.84
PRKDC-211ENST00000546304 PSDA5PKW4 1024 aaPredicted RBP9.81□□□□□ -0.84
PRKDC-211ENST00000546304 PLCB2Q00722 1185 aa9.81□□□□□ -0.84
PRKDC-211ENST00000546304 TSHZ2Q9NRE2 1034 aa9.81□□□□□ -0.84
PRKDC-211ENST00000546304 ZMYM4Q5VZL5 1548 aa9.81□□□□□ -0.84
PRKDC-211ENST00000546304 POGZQ7Z3K3 1410 aa9.81□□□□□ -0.84
PRKDC-211ENST00000546304 MIA2Q96PC5 1412 aa9.81□□□□□ -0.84
PRKDC-211ENST00000546304 KDM5CP41229 1560 aa9.8□□□□□ -0.84
PRKDC-211ENST00000546304 KRTAP3-3Q9BYR6 98 aa9.8□□□□□ -0.84
PRKDC-211ENST00000546304 KRTAP3-2Q9BYR7 98 aa9.8□□□□□ -0.84
PRKDC-211ENST00000546304 ARHGEF40Q8TER5 1519 aa9.79□□□□□ -0.84
PRKDC-211ENST00000546304 CFDP1Q9UEE9 299 aaPredicted RBP9.79□□□□□ -0.84
PRKDC-211ENST00000546304 ARHGEF5Q12774 1597 aa9.79□□□□□ -0.84
PRKDC-211ENST00000546304 HECW2Q9P2P5 1572 aa9.79□□□□□ -0.84
PRKDC-211ENST00000546304 DENND4BO75064 1496 aaPredicted RBP9.79□□□□□ -0.84
PRKDC-211ENST00000546304 TCOF1Q13428 1488 aaKnown RBP9.79□□□□□ -0.84
PRKDC-211ENST00000546304 ZNF518AQ6AHZ1 1483 aa9.79□□□□□ -0.84
PRKDC-211ENST00000546304 COL17A1Q9UMD9 1497 aaPredicted RBP9.79□□□□□ -0.84
PRKDC-211ENST00000546304 ARHGEF12Q9NZN5 1544 aa9.78□□□□□ -0.84
PRKDC-211ENST00000546304 EFCAB2Q5VUJ9 269 aa9.78□□□□□ -0.84
PRKDC-211ENST00000546304 ANO8Q9HCE9 1232 aaPredicted RBP9.78□□□□□ -0.84
PRKDC-211ENST00000546304 INO80Q9ULG1 1556 aaPredicted RBP9.78□□□□□ -0.84
PRKDC-211ENST00000546304 DNMT1P26358 1616 aaKnown RBP9.78□□□□□ -0.84
PRKDC-211ENST00000546304 ZFYVE16Q7Z3T8 1539 aa9.77□□□□□ -0.84
PRKDC-211ENST00000546304 SCAPERQ9BY12 1400 aa9.77□□□□□ -0.85
PRKDC-211ENST00000546304 KIAA1107Q9UPP5 1409 aa9.77□□□□□ -0.85
PRKDC-211ENST00000546304 MAP3K9P80192 1104 aa9.77□□□□□ -0.85
PRKDC-211ENST00000546304 CCDC141Q6ZP82 1450 aa9.77□□□□□ -0.85
PRKDC-211ENST00000546304 EVI5O60447 810 aa9.76□□□□□ -0.85
PRKDC-211ENST00000546304 PPARGC1BQ86YN6 1023 aaKnown RBP9.76□□□□□ -0.85
PRKDC-211ENST00000546304 WDR70Q9NW82 654 aa9.76□□□□□ -0.85
PRKDC-211ENST00000546304 ADGBQ8N7X0 1667 aa9.75□□□□□ -0.85
PRKDC-211ENST00000546304 MBD5Q9P267 1494 aa9.75□□□□□ -0.85
PRKDC-211ENST00000546304 ZNF777Q9ULD5 760 aaPredicted RBP9.75□□□□□ -0.85
PRKDC-211ENST00000546304 KIDINS220Q9ULH0 1771 aa9.75□□□□□ -0.85
PRKDC-211ENST00000546304 MAST1Q9Y2H9 1570 aa9.75□□□□□ -0.85
PRKDC-211ENST00000546304 ABCA6Q8N139 1617 aa9.74□□□□□ -0.85
PRKDC-211ENST00000546304 RRBP1Q9P2E9 1410 aaKnown RBP9.74□□□□□ -0.85
PRKDC-211ENST00000546304 TRAPPC8Q9Y2L5 1435 aa9.74□□□□□ -0.85
PRKDC-211ENST00000546304 SHANK2Q9UPX8 1470 aa9.74□□□□□ -0.85
PRKDC-211ENST00000546304 ATP7AQ04656 1500 aa9.74□□□□□ -0.85
PRKDC-211ENST00000546304 PBX2P40425 430 aa9.74□□□□□ -0.85
PRKDC-211ENST00000546304 E2F4Q16254 413 aa9.74□□□□□ -0.85
PRKDC-211ENST00000546304 ZNF644Q9H582 1327 aaPredicted RBP9.74□□□□□ -0.85
PRKDC-211ENST00000546304 PLXNC1O60486 1568 aa9.73□□□□□ -0.85
PRKDC-211ENST00000546304 DIP2CQ9Y2E4 1556 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 145 ms