RNA–Protein interactions for RNA: ENST00000546296.5

LTBR-215, Transcript of lymphotoxin beta receptor, humanhuman

TSL 4

Gene LTBR, Length 783 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-215ENST00000546296 PCGF6Q9BYE7 350 aa24.66■■□□□ 1.54
LTBR-215ENST00000546296 POLR1AO95602 1720 aaPredicted RBP24.66■■□□□ 1.54
LTBR-215ENST00000546296 MED14O60244 1454 aa24.65■■□□□ 1.54
LTBR-215ENST00000546296 NEURL4Q96JN8 1562 aa24.65■■□□□ 1.54
LTBR-215ENST00000546296 SENP3Q9H4L4 574 aaPredicted RBP24.65■■□□□ 1.54
LTBR-215ENST00000546296 ZFYVE9O95405 1425 aa24.62■■□□□ 1.53
LTBR-215ENST00000546296 RGL3Q3MIN7 710 aa24.62■■□□□ 1.53
LTBR-215ENST00000546296 MYO5BQ9ULV0 1848 aa24.62■■□□□ 1.53
LTBR-215ENST00000546296 ANKRD30BQ9BXX2 1392 aa24.62■■□□□ 1.53
LTBR-215ENST00000546296 KIF1BO60333 1816 aa24.59■■□□□ 1.53
LTBR-215ENST00000546296 RPGRIP1LQ68CZ1 1315 aa24.59■■□□□ 1.53
LTBR-215ENST00000546296 SLC26A8Q96RN1 970 aa24.58■■□□□ 1.53
LTBR-215ENST00000546296 IQGAP1P46940 1657 aa24.58■■□□□ 1.53
LTBR-215ENST00000546296 ZNF335Q9H4Z2 1342 aaPredicted RBP24.58■■□□□ 1.52
LTBR-215ENST00000546296 PLEKHG1Q9ULL1 1385 aa24.56■■□□□ 1.52
LTBR-215ENST00000546296 VGFO15240 615 aaPredicted RBP24.55■■□□□ 1.52
LTBR-215ENST00000546296 SPATA31E1Q6ZUB1 1445 aa24.52■■□□□ 1.52
LTBR-215ENST00000546296 NEXMIFQ5QGS0 1516 aa24.5■■□□□ 1.51
LTBR-215ENST00000546296 CERKQ8TCT0 537 aa24.49■■□□□ 1.51
LTBR-215ENST00000546296 TBX22Q9Y458 520 aa24.49■■□□□ 1.51
LTBR-215ENST00000546296 DHX57Q6P158 1386 aaKnown RBP24.49■■□□□ 1.51
LTBR-215ENST00000546296 LTBP4Q8N2S1 1624 aa24.43■■□□□ 1.5
LTBR-215ENST00000546296 KCNA6P17658 529 aa24.43■■□□□ 1.5
LTBR-215ENST00000546296 ADAMTS13Q76LX8 1427 aa24.43■■□□□ 1.5
LTBR-215ENST00000546296 ADGRF5Q8IZF2 1346 aa24.42■■□□□ 1.5
LTBR-215ENST00000546296 NEUROD1Q13562 356 aa24.42■■□□□ 1.5
LTBR-215ENST00000546296 SIN3AQ96ST3 1273 aa24.41■■□□□ 1.5
LTBR-215ENST00000546296 DCAF11Q8TEB1 546 aa24.4■■□□□ 1.5
LTBR-215ENST00000546296 KDM2AQ9Y2K7 1162 aa24.4■■□□□ 1.5
LTBR-215ENST00000546296 CPS1P31327 1500 aa24.39■■□□□ 1.49
LTBR-215ENST00000546296 SETBP1Q9Y6X0 1596 aa24.38■■□□□ 1.49
LTBR-215ENST00000546296 PPLO60437 1756 aa24.38■■□□□ 1.49
LTBR-215ENST00000546296 DIP2AQ14689 1571 aa24.37■■□□□ 1.49
LTBR-215ENST00000546296 PROSER2Q86WR7 435 aaPredicted RBP24.36■■□□□ 1.49
LTBR-215ENST00000546296 PIK3R4Q99570 1358 aa24.36■■□□□ 1.49
LTBR-215ENST00000546296 STAC3Q96MF2 364 aa24.34■■□□□ 1.49
LTBR-215ENST00000546296 AMOTL2Q9Y2J4 779 aa24.34■■□□□ 1.49
LTBR-215ENST00000546296 METP08581 1390 aa24.33■■□□□ 1.49
LTBR-215ENST00000546296 NRXN3Q9Y4C0 1643 aa24.32■■□□□ 1.48
LTBR-215ENST00000546296 IFT172Q9UG01 1749 aa24.3■■□□□ 1.48
LTBR-215ENST00000546296 STRCP1A6NGW2 1772 aa24.3■■□□□ 1.48
LTBR-215ENST00000546296 ALKQ9UM73 1620 aa24.3■■□□□ 1.48
LTBR-215ENST00000546296 MYOM2P54296 1465 aa24.3■■□□□ 1.48
LTBR-215ENST00000546296 LRRC7Q96NW7 1537 aa24.3■■□□□ 1.48
LTBR-215ENST00000546296 RBM33Q96EV2 1170 aaKnown RBP24.29■■□□□ 1.48
LTBR-215ENST00000546296 PIK3C2GO75747 1445 aa24.28■■□□□ 1.48
LTBR-215ENST00000546296 PTPRUQ92729 1446 aa24.27■■□□□ 1.48
LTBR-215ENST00000546296 IQSEC2Q5JU85 1478 aa24.27■■□□□ 1.48
LTBR-215ENST00000546296 CFAP70Q5T0N1 1121 aa24.27■■□□□ 1.48
LTBR-215ENST00000546296 L3MBTL2Q969R5 705 aa24.27■■□□□ 1.48
LTBR-215ENST00000546296 C14orf93Q9H972 538 aaKnown RBP24.27■■□□□ 1.48
LTBR-215ENST00000546296 NKTRP30414 1462 aaKnown RBP24.26■■□□□ 1.47
LTBR-215ENST00000546296 TMEM94Q12767 1356 aa24.26■■□□□ 1.47
LTBR-215ENST00000546296 NWD1Q149M9 1564 aa24.25■■□□□ 1.47
LTBR-215ENST00000546296 TMEM132EQ6IEE7 984 aa24.25■■□□□ 1.47
LTBR-215ENST00000546296 C14orf37Q86TY3 774 aa24.25■■□□□ 1.47
LTBR-215ENST00000546296 FBXO41Q8TF61 875 aa24.25■■□□□ 1.47
LTBR-215ENST00000546296 CHD2O14647 1828 aaKnown RBP24.25■■□□□ 1.47
LTBR-215ENST00000546296 NRXN1Q9ULB1 1477 aa24.25■■□□□ 1.47
LTBR-215ENST00000546296 UBAP1LF5GYI3 381 aa24.24■■□□□ 1.47
LTBR-215ENST00000546296 CCER1Q8TC90 406 aaPredicted RBP24.24■■□□□ 1.47
LTBR-215ENST00000546296 STK26Q9P289 416 aa24.24■■□□□ 1.47
LTBR-215ENST00000546296 TONSLQ96HA7 1378 aa24.2■■□□□ 1.46
LTBR-215ENST00000546296 TOM1O60784 492 aa24.2■■□□□ 1.46
LTBR-215ENST00000546296 SETD1AO15047 1707 aaKnown RBP24.17■■□□□ 1.46
LTBR-215ENST00000546296 LRPPRCP42704 1394 aaKnown RBP24.16■■□□□ 1.46
LTBR-215ENST00000546296 CLSPNQ9HAW4 1339 aa24.16■■□□□ 1.46
LTBR-215ENST00000546296 MSH6P52701 1360 aa24.16■■□□□ 1.46
LTBR-215ENST00000546296 ILDR1Q86SU0 546 aaPredicted RBP24.15■■□□□ 1.46
LTBR-215ENST00000546296 NCOA3Q9Y6Q9 1424 aa24.15■■□□□ 1.46
LTBR-215ENST00000546296 XRN1Q8IZH2 1706 aaKnown RBP24.15■■□□□ 1.46
LTBR-215ENST00000546296 SCAF1Q9H7N4 1312 aaKnown RBP24.14■■□□□ 1.46
LTBR-215ENST00000546296 PIP4K2BP78356 416 aa24.14■■□□□ 1.45
LTBR-215ENST00000546296 YTHDC2Q9H6S0 1430 aaKnown RBP24.14■■□□□ 1.45
LTBR-215ENST00000546296 ROBO2Q9HCK4 1378 aa24.14■■□□□ 1.45
LTBR-215ENST00000546296 PRAG1Q86YV5 1406 aa24.13■■□□□ 1.45
LTBR-215ENST00000546296 C19orf44Q9H6X5 657 aa24.13■■□□□ 1.45
LTBR-215ENST00000546296 ABCC11Q96J66 1382 aa24.13■■□□□ 1.45
LTBR-215ENST00000546296 LAMC1P11047 1609 aa24.13■■□□□ 1.45
LTBR-215ENST00000546296 PTCH1Q13635 1447 aa24.11■■□□□ 1.45
LTBR-215ENST00000546296 ASXL1Q8IXJ9 1541 aa24.11■■□□□ 1.45
LTBR-215ENST00000546296 ATF3P18847 181 aa24.11■■□□□ 1.45
LTBR-215ENST00000546296 WAPLQ7Z5K2 1190 aa24.09■■□□□ 1.45
LTBR-215ENST00000546296 TRAK1Q9UPV9 953 aa24.09■■□□□ 1.45
LTBR-215ENST00000546296 XIRP1Q702N8 1843 aaKnown RBP24.09■■□□□ 1.45
LTBR-215ENST00000546296 NBPF1Q3BBV0 1214 aa24.07■■□□□ 1.44
LTBR-215ENST00000546296 CADPS2Q86UW7 1296 aa24.07■■□□□ 1.44
LTBR-215ENST00000546296 SIRT1Q96EB6 747 aa24.07■■□□□ 1.44
LTBR-215ENST00000546296 POGKQ9P215 609 aa24.07■■□□□ 1.44
LTBR-215ENST00000546296 TECPR2O15040 1411 aa24.07■■□□□ 1.44
LTBR-215ENST00000546296 ADGRB1O14514 1584 aa24.05■■□□□ 1.44
LTBR-215ENST00000546296 PRAM1Q96QH2 718 aa24.05■■□□□ 1.44
LTBR-215ENST00000546296 SLAIN2Q9P270 581 aa24.04■■□□□ 1.44
LTBR-215ENST00000546296 SAFB2Q14151 953 aaKnown RBP eCLIP24.03■■□□□ 1.44
LTBR-215ENST00000546296 NBPF8Q3BBV2 869 aa24.03■■□□□ 1.44
LTBR-215ENST00000546296 FAM135BQ49AJ0 1406 aa24.02■■□□□ 1.44
LTBR-215ENST00000546296 ADGRL3Q9HAR2 1447 aa24.02■■□□□ 1.44
LTBR-215ENST00000546296 TIMELESSQ9UNS1 1208 aa24.02■■□□□ 1.44
LTBR-215ENST00000546296 PLEKHH1Q9ULM0 1364 aa24.02■■□□□ 1.44
LTBR-215ENST00000546296 KIAA1210Q9ULL0 1709 aa23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms