RNA–Protein interactions for RNA: ENST00000545042.1

DDX55-213, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-213ENST00000545042 RIMS2Q9UQ26 1411 aa19.76■□□□□ 0.75
DDX55-213ENST00000545042 MYO5BQ9ULV0 1848 aa19.75■□□□□ 0.75
DDX55-213ENST00000545042 ZFYVE9O95405 1425 aa19.74■□□□□ 0.75
DDX55-213ENST00000545042 TRPM2O94759 1503 aa19.73■□□□□ 0.75
DDX55-213ENST00000545042 ZNF326Q5BKZ1 582 aaKnown RBP19.71■□□□□ 0.75
DDX55-213ENST00000545042 PLEKHG1Q9ULL1 1385 aa19.7■□□□□ 0.74
DDX55-213ENST00000545042 SLC26A8Q96RN1 970 aa19.7■□□□□ 0.74
DDX55-213ENST00000545042 MPHOSPH9Q99550 1183 aa19.7■□□□□ 0.74
DDX55-213ENST00000545042 CLTCL1P53675 1640 aa19.68■□□□□ 0.74
DDX55-213ENST00000545042 RAB3GAP2Q9H2M9 1393 aa19.68■□□□□ 0.74
DDX55-213ENST00000545042 UBAP1LF5GYI3 381 aa19.67■□□□□ 0.74
DDX55-213ENST00000545042 NUTM2DQ5VT03 806 aaPredicted RBP19.67■□□□□ 0.74
DDX55-213ENST00000545042 SENP3Q9H4L4 574 aaPredicted RBP19.66■□□□□ 0.74
DDX55-213ENST00000545042 KIF1BO60333 1816 aa19.65■□□□□ 0.74
DDX55-213ENST00000545042 FOXD1Q16676 465 aa19.65■□□□□ 0.74
DDX55-213ENST00000545042 KCNA6P17658 529 aa19.64■□□□□ 0.73
DDX55-213ENST00000545042 STRCP1A6NGW2 1772 aa19.64■□□□□ 0.73
DDX55-213ENST00000545042 LRRC7Q96NW7 1537 aa19.63■□□□□ 0.73
DDX55-213ENST00000545042 TOM1O60784 492 aa19.62■□□□□ 0.73
DDX55-213ENST00000545042 TBX22Q9Y458 520 aa19.62■□□□□ 0.73
DDX55-213ENST00000545042 CCDC144AA2RUR9 1427 aa19.61■□□□□ 0.73
DDX55-213ENST00000545042 HRCP23327 699 aa19.6■□□□□ 0.73
DDX55-213ENST00000545042 DIP2AQ14689 1571 aa19.59■□□□□ 0.73
DDX55-213ENST00000545042 RPGRIP1LQ68CZ1 1315 aa19.58■□□□□ 0.73
DDX55-213ENST00000545042 VGFO15240 615 aaPredicted RBP19.57■□□□□ 0.72
DDX55-213ENST00000545042 PROSER2Q86WR7 435 aaPredicted RBP19.57■□□□□ 0.72
DDX55-213ENST00000545042 ADAMTS13Q76LX8 1427 aa19.57■□□□□ 0.72
DDX55-213ENST00000545042 NEXMIFQ5QGS0 1516 aa19.56■□□□□ 0.72
DDX55-213ENST00000545042 SCAF1Q9H7N4 1312 aaKnown RBP19.56■□□□□ 0.72
DDX55-213ENST00000545042 NKTRP30414 1462 aaKnown RBP19.56■□□□□ 0.72
DDX55-213ENST00000545042 NWD1Q149M9 1564 aa19.56■□□□□ 0.72
DDX55-213ENST00000545042 PIK3R4Q99570 1358 aa19.56■□□□□ 0.72
DDX55-213ENST00000545042 SETBP1Q9Y6X0 1596 aa19.54■□□□□ 0.72
DDX55-213ENST00000545042 PIP4K2BP78356 416 aa19.54■□□□□ 0.72
DDX55-213ENST00000545042 TMEM94Q12767 1356 aa19.54■□□□□ 0.72
DDX55-213ENST00000545042 CHD2O14647 1828 aaKnown RBP19.53■□□□□ 0.72
DDX55-213ENST00000545042 RGL3Q3MIN7 710 aa19.51■□□□□ 0.71
DDX55-213ENST00000545042 AMOTL2Q9Y2J4 779 aa19.49■□□□□ 0.71
DDX55-213ENST00000545042 NRXN3Q9Y4C0 1643 aa19.49■□□□□ 0.71
DDX55-213ENST00000545042 SPATA31E1Q6ZUB1 1445 aa19.49■□□□□ 0.71
DDX55-213ENST00000545042 XIRP1Q702N8 1843 aaKnown RBP19.48■□□□□ 0.71
DDX55-213ENST00000545042 RBM33Q96EV2 1170 aaKnown RBP19.48■□□□□ 0.71
DDX55-213ENST00000545042 PPLO60437 1756 aa19.47■□□□□ 0.71
DDX55-213ENST00000545042 MSH6P52701 1360 aa19.47■□□□□ 0.71
DDX55-213ENST00000545042 ANKRD30BQ9BXX2 1392 aa19.47■□□□□ 0.71
DDX55-213ENST00000545042 C14orf37Q86TY3 774 aa19.47■□□□□ 0.71
DDX55-213ENST00000545042 NCOA3Q9Y6Q9 1424 aa19.45■□□□□ 0.7
DDX55-213ENST00000545042 METP08581 1390 aa19.44■□□□□ 0.7
DDX55-213ENST00000545042 PTPRUQ92729 1446 aa19.44■□□□□ 0.7
DDX55-213ENST00000545042 ALKQ9UM73 1620 aa19.43■□□□□ 0.7
DDX55-213ENST00000545042 ADGRF5Q8IZF2 1346 aa19.41■□□□□ 0.7
DDX55-213ENST00000545042 XRN1Q8IZH2 1706 aaKnown RBP19.4■□□□□ 0.7
DDX55-213ENST00000545042 HSPA1LP34931 641 aa19.4■□□□□ 0.7
DDX55-213ENST00000545042 C19orf44Q9H6X5 657 aa19.39■□□□□ 0.69
DDX55-213ENST00000545042 IFT172Q9UG01 1749 aa19.39■□□□□ 0.69
DDX55-213ENST00000545042 ATF3P18847 181 aa19.38■□□□□ 0.69
DDX55-213ENST00000545042 CADPS2Q86UW7 1296 aa19.37■□□□□ 0.69
DDX55-213ENST00000545042 SLAIN2Q9P270 581 aa19.36■□□□□ 0.69
DDX55-213ENST00000545042 SETD1AO15047 1707 aaKnown RBP19.36■□□□□ 0.69
DDX55-213ENST00000545042 FAM135BQ49AJ0 1406 aa19.35■□□□□ 0.69
DDX55-213ENST00000545042 TRIM26Q12899 539 aaPredicted RBP19.35■□□□□ 0.69
DDX55-213ENST00000545042 PIK3C2GO75747 1445 aa19.34■□□□□ 0.69
DDX55-213ENST00000545042 MYOM2P54296 1465 aa19.34■□□□□ 0.69
DDX55-213ENST00000545042 PTCH1Q13635 1447 aa19.33■□□□□ 0.68
DDX55-213ENST00000545042 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.32■□□□□ 0.68
DDX55-213ENST00000545042 STAC3Q96MF2 364 aa19.32■□□□□ 0.68
DDX55-213ENST00000545042 DCCP43146 1447 aa19.32■□□□□ 0.68
DDX55-213ENST00000545042 DCAF11Q8TEB1 546 aa19.3■□□□□ 0.68
DDX55-213ENST00000545042 PRAG1Q86YV5 1406 aa19.3■□□□□ 0.68
DDX55-213ENST00000545042 ROBO2Q9HCK4 1378 aa19.3■□□□□ 0.68
DDX55-213ENST00000545042 ROBO1Q9Y6N7 1651 aa19.3■□□□□ 0.68
DDX55-213ENST00000545042 NRXN1Q9ULB1 1477 aa19.29■□□□□ 0.68
DDX55-213ENST00000545042 ADGRL3Q9HAR2 1447 aa19.29■□□□□ 0.68
DDX55-213ENST00000545042 C14orf93Q9H972 538 aaKnown RBP19.29■□□□□ 0.68
DDX55-213ENST00000545042 STK26Q9P289 416 aa19.29■□□□□ 0.68
DDX55-213ENST00000545042 KDM2AQ9Y2K7 1162 aa19.29■□□□□ 0.68
DDX55-213ENST00000545042 TMEM132EQ6IEE7 984 aa19.28■□□□□ 0.68
DDX55-213ENST00000545042 LRPPRCP42704 1394 aaKnown RBP19.28■□□□□ 0.68
DDX55-213ENST00000545042 LAMC1P11047 1609 aa19.27■□□□□ 0.68
DDX55-213ENST00000545042 CFAP70Q5T0N1 1121 aa19.26■□□□□ 0.67
DDX55-213ENST00000545042 ABCC11Q96J66 1382 aa19.26■□□□□ 0.67
DDX55-213ENST00000545042 DHX57Q6P158 1386 aaKnown RBP19.25■□□□□ 0.67
DDX55-213ENST00000545042 TECPR2O15040 1411 aa19.25■□□□□ 0.67
DDX55-213ENST00000545042 YTHDC2Q9H6S0 1430 aaKnown RBP19.25■□□□□ 0.67
DDX55-213ENST00000545042 DISP3Q9P2K9 1392 aa19.24■□□□□ 0.67
DDX55-213ENST00000545042 NALCNQ8IZF0 1738 aa19.24■□□□□ 0.67
DDX55-213ENST00000545042 ASXL1Q8IXJ9 1541 aa19.24■□□□□ 0.67
DDX55-213ENST00000545042 MST1RQ04912 1400 aa19.21■□□□□ 0.67
DDX55-213ENST00000545042 KNDC1Q76NI1 1749 aa19.21■□□□□ 0.67
DDX55-213ENST00000545042 BRINP3Q76B58 766 aa19.2■□□□□ 0.66
DDX55-213ENST00000545042 WAPLQ7Z5K2 1190 aa19.2■□□□□ 0.66
DDX55-213ENST00000545042 SIRT1Q96EB6 747 aa19.2■□□□□ 0.66
DDX55-213ENST00000545042 PHLPP1O60346 1717 aa19.2■□□□□ 0.66
DDX55-213ENST00000545042 C1orf167Q5SNV9 1468 aa19.16■□□□□ 0.66
DDX55-213ENST00000545042 MED1Q15648 1581 aaPredicted RBP19.15■□□□□ 0.66
DDX55-213ENST00000545042 AHDC1Q5TGY3 1603 aaPredicted RBP19.15■□□□□ 0.66
DDX55-213ENST00000545042 NEUROD1Q13562 356 aa19.15■□□□□ 0.66
DDX55-213ENST00000545042 POGKQ9P215 609 aa19.15■□□□□ 0.66
DDX55-213ENST00000545042 PLEKHH1Q9ULM0 1364 aa19.15■□□□□ 0.66
DDX55-213ENST00000545042 CDC42BPGQ6DT37 1551 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms