RNA–Protein interactions for RNA: ENST00000544429.5

DDX55-211, Transcript of DEAD-box helicase 55, humanhuman

TSL 4

Gene DDX55, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-211ENST00000544429 CCDC144AA2RUR9 1427 aa28.28■■■□□ 2.12
DDX55-211ENST00000544429 CHGAP10645 457 aaKnown RBP28.28■■■□□ 2.12
DDX55-211ENST00000544429 ANKRD30BQ9BXX2 1392 aa28.27■■■□□ 2.12
DDX55-211ENST00000544429 NEXMIFQ5QGS0 1516 aa28.27■■■□□ 2.12
DDX55-211ENST00000544429 SPATA31E1Q6ZUB1 1445 aa28.26■■■□□ 2.11
DDX55-211ENST00000544429 PLEKHG1Q9ULL1 1385 aa28.24■■■□□ 2.11
DDX55-211ENST00000544429 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.24■■■□□ 2.11
DDX55-211ENST00000544429 HDGFP51858 240 aaKnown RBP28.23■■■□□ 2.11
DDX55-211ENST00000544429 ZNF335Q9H4Z2 1342 aaPredicted RBP28.21■■■□□ 2.11
DDX55-211ENST00000544429 PPLO60437 1756 aa28.2■■■□□ 2.11
DDX55-211ENST00000544429 STRCP1A6NGW2 1772 aa28.19■■■□□ 2.1
DDX55-211ENST00000544429 IFT172Q9UG01 1749 aa28.18■■■□□ 2.1
DDX55-211ENST00000544429 NRXN3Q9Y4C0 1643 aa28.18■■■□□ 2.1
DDX55-211ENST00000544429 RPGRIP1LQ68CZ1 1315 aa28.17■■■□□ 2.1
DDX55-211ENST00000544429 SETBP1Q9Y6X0 1596 aa28.16■■■□□ 2.1
DDX55-211ENST00000544429 ADAMTS13Q76LX8 1427 aa28.16■■■□□ 2.1
DDX55-211ENST00000544429 ZNF326Q5BKZ1 582 aaKnown RBP28.15■■■□□ 2.1
DDX55-211ENST00000544429 DIP2AQ14689 1571 aa28.14■■■□□ 2.1
DDX55-211ENST00000544429 PPP1R15AO75807 674 aaPredicted RBP28.13■■■□□ 2.09
DDX55-211ENST00000544429 NUTM2DQ5VT03 806 aaPredicted RBP28.13■■■□□ 2.09
DDX55-211ENST00000544429 CPS1P31327 1500 aa28.13■■■□□ 2.09
DDX55-211ENST00000544429 CERKQ8TCT0 537 aa28.11■■■□□ 2.09
DDX55-211ENST00000544429 SLC26A8Q96RN1 970 aa28.1■■■□□ 2.09
DDX55-211ENST00000544429 IQSEC2Q5JU85 1478 aa28.09■■■□□ 2.09
DDX55-211ENST00000544429 NWD1Q149M9 1564 aa28.09■■■□□ 2.09
DDX55-211ENST00000544429 TBX22Q9Y458 520 aa28.09■■■□□ 2.09
DDX55-211ENST00000544429 CHD2O14647 1828 aaKnown RBP28.08■■■□□ 2.09
DDX55-211ENST00000544429 DHX57Q6P158 1386 aaKnown RBP28.08■■■□□ 2.09
DDX55-211ENST00000544429 VGFO15240 615 aaPredicted RBP28.06■■■□□ 2.08
DDX55-211ENST00000544429 SETD1AO15047 1707 aaKnown RBP28.06■■■□□ 2.08
DDX55-211ENST00000544429 PIK3R4Q99570 1358 aa28.03■■■□□ 2.08
DDX55-211ENST00000544429 RGL3Q3MIN7 710 aa28.03■■■□□ 2.08
DDX55-211ENST00000544429 KCNA6P17658 529 aa28.01■■■□□ 2.07
DDX55-211ENST00000544429 LRRC7Q96NW7 1537 aa28.01■■■□□ 2.07
DDX55-211ENST00000544429 MYOM2P54296 1465 aa28.01■■■□□ 2.07
DDX55-211ENST00000544429 NRXN1Q9ULB1 1477 aa28.01■■■□□ 2.07
DDX55-211ENST00000544429 BCANQ96GW7 911 aa28■■■□□ 2.07
DDX55-211ENST00000544429 XIRP1Q702N8 1843 aaKnown RBP27.99■■■□□ 2.07
DDX55-211ENST00000544429 SENP3Q9H4L4 574 aaPredicted RBP27.99■■■□□ 2.07
DDX55-211ENST00000544429 NKTRP30414 1462 aaKnown RBP27.99■■■□□ 2.07
DDX55-211ENST00000544429 ALKQ9UM73 1620 aa27.98■■■□□ 2.07
DDX55-211ENST00000544429 ADGRF5Q8IZF2 1346 aa27.97■■■□□ 2.07
DDX55-211ENST00000544429 PIK3C2GO75747 1445 aa27.97■■■□□ 2.07
DDX55-211ENST00000544429 XRN1Q8IZH2 1706 aaKnown RBP27.96■■■□□ 2.07
DDX55-211ENST00000544429 PTPRUQ92729 1446 aa27.96■■■□□ 2.07
DDX55-211ENST00000544429 METP08581 1390 aa27.95■■■□□ 2.06
DDX55-211ENST00000544429 PCGF6Q9BYE7 350 aa27.94■■■□□ 2.06
DDX55-211ENST00000544429 PRAG1Q86YV5 1406 aa27.9■■■□□ 2.06
DDX55-211ENST00000544429 FBXO41Q8TF61 875 aa27.88■■■□□ 2.05
DDX55-211ENST00000544429 STAC3Q96MF2 364 aa27.88■■■□□ 2.05
DDX55-211ENST00000544429 LAMC1P11047 1609 aa27.87■■■□□ 2.05
DDX55-211ENST00000544429 ASXL1Q8IXJ9 1541 aa27.86■■■□□ 2.05
DDX55-211ENST00000544429 AMOTL2Q9Y2J4 779 aa27.85■■■□□ 2.05
DDX55-211ENST00000544429 TMEM94Q12767 1356 aa27.85■■■□□ 2.05
DDX55-211ENST00000544429 DCAF11Q8TEB1 546 aa27.83■■■□□ 2.05
DDX55-211ENST00000544429 SIN3AQ96ST3 1273 aa27.83■■■□□ 2.05
DDX55-211ENST00000544429 NCOA3Q9Y6Q9 1424 aa27.83■■■□□ 2.05
DDX55-211ENST00000544429 C14orf93Q9H972 538 aaKnown RBP27.82■■■□□ 2.04
DDX55-211ENST00000544429 PROSER2Q86WR7 435 aaPredicted RBP27.81■■■□□ 2.04
DDX55-211ENST00000544429 PTCH1Q13635 1447 aa27.79■■■□□ 2.04
DDX55-211ENST00000544429 KNDC1Q76NI1 1749 aa27.78■■■□□ 2.04
DDX55-211ENST00000544429 TECPR2O15040 1411 aa27.77■■■□□ 2.04
DDX55-211ENST00000544429 ILDR1Q86SU0 546 aaPredicted RBP27.77■■■□□ 2.04
DDX55-211ENST00000544429 ADGRB1O14514 1584 aa27.76■■■□□ 2.03
DDX55-211ENST00000544429 RBM33Q96EV2 1170 aaKnown RBP27.75■■■□□ 2.03
DDX55-211ENST00000544429 LRPPRCP42704 1394 aaKnown RBP27.74■■■□□ 2.03
DDX55-211ENST00000544429 CFAP70Q5T0N1 1121 aa27.74■■■□□ 2.03
DDX55-211ENST00000544429 KDM2AQ9Y2K7 1162 aa27.74■■■□□ 2.03
DDX55-211ENST00000544429 KIAA1210Q9ULL0 1709 aa27.74■■■□□ 2.03
DDX55-211ENST00000544429 ROBO2Q9HCK4 1378 aa27.73■■■□□ 2.03
DDX55-211ENST00000544429 L3MBTL2Q969R5 705 aa27.73■■■□□ 2.03
DDX55-211ENST00000544429 ABCC11Q96J66 1382 aa27.73■■■□□ 2.03
DDX55-211ENST00000544429 UBAP1LF5GYI3 381 aa27.71■■■□□ 2.03
DDX55-211ENST00000544429 YTHDC2Q9H6S0 1430 aaKnown RBP27.71■■■□□ 2.03
DDX55-211ENST00000544429 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.7■■■□□ 2.03
DDX55-211ENST00000544429 NEUROD1Q13562 356 aa27.7■■■□□ 2.02
DDX55-211ENST00000544429 TMEM132EQ6IEE7 984 aa27.7■■■□□ 2.02
DDX55-211ENST00000544429 TOM1O60784 492 aa27.69■■■□□ 2.02
DDX55-211ENST00000544429 NALCNQ8IZF0 1738 aa27.69■■■□□ 2.02
DDX55-211ENST00000544429 MSH6P52701 1360 aa27.68■■■□□ 2.02
DDX55-211ENST00000544429 CLSPNQ9HAW4 1339 aa27.67■■■□□ 2.02
DDX55-211ENST00000544429 DCCP43146 1447 aa27.66■■■□□ 2.02
DDX55-211ENST00000544429 ADGRL3Q9HAR2 1447 aa27.66■■■□□ 2.02
DDX55-211ENST00000544429 DLC1Q96QB1 1528 aa27.64■■■□□ 2.02
DDX55-211ENST00000544429 C19orf44Q9H6X5 657 aa27.64■■■□□ 2.02
DDX55-211ENST00000544429 FAM135BQ49AJ0 1406 aa27.64■■■□□ 2.02
DDX55-211ENST00000544429 SIRT1Q96EB6 747 aa27.63■■■□□ 2.01
DDX55-211ENST00000544429 STK26Q9P289 416 aa27.6■■■□□ 2.01
DDX55-211ENST00000544429 TRPM1Q7Z4N2 1603 aa27.59■■■□□ 2.01
DDX55-211ENST00000544429 PLEKHH1Q9ULM0 1364 aa27.57■■■□□ 2
DDX55-211ENST00000544429 CADPS2Q86UW7 1296 aa27.56■■■□□ 2
DDX55-211ENST00000544429 TONSLQ96HA7 1378 aa27.56■■■□□ 2
DDX55-211ENST00000544429 ARHGEF28Q8N1W1 1705 aaKnown RBP27.55■■■□□ 2
DDX55-211ENST00000544429 C14orf37Q86TY3 774 aa27.55■■■□□ 2
DDX55-211ENST00000544429 CDC42BPGQ6DT37 1551 aa27.54■■■□□ 2
DDX55-211ENST00000544429 WAPLQ7Z5K2 1190 aa27.54■■■□□ 2
DDX55-211ENST00000544429 PIP4K2BP78356 416 aa27.53■■■□□ 2
DDX55-211ENST00000544429 NBPF1Q3BBV0 1214 aa27.53■■■□□ 2
DDX55-211ENST00000544429 SLAIN2Q9P270 581 aa27.53■■■□□ 2
DDX55-211ENST00000544429 ROBO1Q9Y6N7 1651 aa27.52■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms