RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 FBXO41Q8TF61 875 aa14.5□□□□□ -0.09
YBX3-212ENST00000542002 RIMS2Q9UQ26 1411 aa14.49□□□□□ -0.09
YBX3-212ENST00000542002 POLR1AO95602 1720 aaPredicted RBP14.49□□□□□ -0.09
YBX3-212ENST00000542002 KDM5AP29375 1690 aaKnown RBP14.49□□□□□ -0.09
YBX3-212ENST00000542002 HRCP23327 699 aa14.47□□□□□ -0.09
YBX3-212ENST00000542002 TRPM2O94759 1503 aa14.46□□□□□ -0.09
YBX3-212ENST00000542002 IQGAP1P46940 1657 aa14.46□□□□□ -0.09
YBX3-212ENST00000542002 HDGFP51858 240 aaKnown RBP14.46□□□□□ -0.09
YBX3-212ENST00000542002 CLTCL1P53675 1640 aa14.45□□□□□ -0.1
YBX3-212ENST00000542002 PPP1R15AO75807 674 aaPredicted RBP14.45□□□□□ -0.1
YBX3-212ENST00000542002 SPHKAPQ2M3C7 1700 aa14.45□□□□□ -0.1
YBX3-212ENST00000542002 ZNF326Q5BKZ1 582 aaKnown RBP14.45□□□□□ -0.1
YBX3-212ENST00000542002 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.45□□□□□ -0.1
YBX3-212ENST00000542002 BCANQ96GW7 911 aa14.45□□□□□ -0.1
YBX3-212ENST00000542002 MYO5BQ9ULV0 1848 aa14.45□□□□□ -0.1
YBX3-212ENST00000542002 PLEKHG1Q9ULL1 1385 aa14.44□□□□□ -0.1
YBX3-212ENST00000542002 ACIN1Q9UKV3 1341 aaKnown RBP14.43□□□□□ -0.1
YBX3-212ENST00000542002 TBX22Q9Y458 520 aa14.42□□□□□ -0.1
YBX3-212ENST00000542002 KCNA6P17658 529 aa14.41□□□□□ -0.1
YBX3-212ENST00000542002 RBM33Q96EV2 1170 aaKnown RBP14.41□□□□□ -0.1
YBX3-212ENST00000542002 STRCP1A6NGW2 1772 aa14.41□□□□□ -0.1
YBX3-212ENST00000542002 ADAMTS13Q76LX8 1427 aa14.41□□□□□ -0.1
YBX3-212ENST00000542002 RGL3Q3MIN7 710 aa14.4□□□□□ -0.1
YBX3-212ENST00000542002 CPS1P31327 1500 aa14.39□□□□□ -0.11
YBX3-212ENST00000542002 LRRC7Q96NW7 1537 aa14.39□□□□□ -0.11
YBX3-212ENST00000542002 ANKRD30BQ9BXX2 1392 aa14.38□□□□□ -0.11
YBX3-212ENST00000542002 CCDC144AA2RUR9 1427 aa14.38□□□□□ -0.11
YBX3-212ENST00000542002 SPATA31E1Q6ZUB1 1445 aa14.38□□□□□ -0.11
YBX3-212ENST00000542002 NEXMIFQ5QGS0 1516 aa14.37□□□□□ -0.11
YBX3-212ENST00000542002 UBAP1LF5GYI3 381 aa14.37□□□□□ -0.11
YBX3-212ENST00000542002 RPGRIP1LQ68CZ1 1315 aa14.37□□□□□ -0.11
YBX3-212ENST00000542002 IQSEC2Q5JU85 1478 aa14.37□□□□□ -0.11
YBX3-212ENST00000542002 METP08581 1390 aa14.35□□□□□ -0.11
YBX3-212ENST00000542002 PTPRUQ92729 1446 aa14.35□□□□□ -0.11
YBX3-212ENST00000542002 VGFO15240 615 aaPredicted RBP14.35□□□□□ -0.11
YBX3-212ENST00000542002 PROSER2Q86WR7 435 aaPredicted RBP14.35□□□□□ -0.11
YBX3-212ENST00000542002 ADGRF5Q8IZF2 1346 aa14.35□□□□□ -0.11
YBX3-212ENST00000542002 TRIM26Q12899 539 aaPredicted RBP14.34□□□□□ -0.11
YBX3-212ENST00000542002 TMEM94Q12767 1356 aa14.34□□□□□ -0.11
YBX3-212ENST00000542002 AMOTL2Q9Y2J4 779 aa14.33□□□□□ -0.12
YBX3-212ENST00000542002 NRXN3Q9Y4C0 1643 aa14.33□□□□□ -0.12
YBX3-212ENST00000542002 SETBP1Q9Y6X0 1596 aa14.31□□□□□ -0.12
YBX3-212ENST00000542002 ALKQ9UM73 1620 aa14.31□□□□□ -0.12
YBX3-212ENST00000542002 PIP4K2BP78356 416 aa14.31□□□□□ -0.12
YBX3-212ENST00000542002 KIF1BO60333 1816 aa14.31□□□□□ -0.12
YBX3-212ENST00000542002 TOM1O60784 492 aa14.3□□□□□ -0.12
YBX3-212ENST00000542002 PIK3R4Q99570 1358 aa14.29□□□□□ -0.12
YBX3-212ENST00000542002 NWD1Q149M9 1564 aa14.29□□□□□ -0.12
YBX3-212ENST00000542002 CHD2O14647 1828 aaKnown RBP14.27□□□□□ -0.12
YBX3-212ENST00000542002 DIP2AQ14689 1571 aa14.26□□□□□ -0.13
YBX3-212ENST00000542002 NKTRP30414 1462 aaKnown RBP14.26□□□□□ -0.13
YBX3-212ENST00000542002 XIRP1Q702N8 1843 aaKnown RBP14.26□□□□□ -0.13
YBX3-212ENST00000542002 PPLO60437 1756 aa14.25□□□□□ -0.13
YBX3-212ENST00000542002 SCAF1Q9H7N4 1312 aaKnown RBP14.25□□□□□ -0.13
YBX3-212ENST00000542002 TMEM132EQ6IEE7 984 aa14.25□□□□□ -0.13
YBX3-212ENST00000542002 KDM2AQ9Y2K7 1162 aa14.25□□□□□ -0.13
YBX3-212ENST00000542002 DHX57Q6P158 1386 aaKnown RBP14.24□□□□□ -0.13
YBX3-212ENST00000542002 HSPA1LP34931 641 aa14.24□□□□□ -0.13
YBX3-212ENST00000542002 CFAP70Q5T0N1 1121 aa14.24□□□□□ -0.13
YBX3-212ENST00000542002 DCAF11Q8TEB1 546 aa14.24□□□□□ -0.13
YBX3-212ENST00000542002 SIN3AQ96ST3 1273 aa14.24□□□□□ -0.13
YBX3-212ENST00000542002 C14orf93Q9H972 538 aaKnown RBP14.24□□□□□ -0.13
YBX3-212ENST00000542002 PIK3C2GO75747 1445 aa14.23□□□□□ -0.13
YBX3-212ENST00000542002 ROBO2Q9HCK4 1378 aa14.22□□□□□ -0.13
YBX3-212ENST00000542002 C19orf44Q9H6X5 657 aa14.22□□□□□ -0.13
YBX3-212ENST00000542002 SLAIN2Q9P270 581 aa14.22□□□□□ -0.13
YBX3-212ENST00000542002 NRXN1Q9ULB1 1477 aa14.22□□□□□ -0.13
YBX3-212ENST00000542002 STK26Q9P289 416 aa14.21□□□□□ -0.13
YBX3-212ENST00000542002 NCOA3Q9Y6Q9 1424 aa14.21□□□□□ -0.13
YBX3-212ENST00000542002 C14orf37Q86TY3 774 aa14.2□□□□□ -0.14
YBX3-212ENST00000542002 SETD1AO15047 1707 aaKnown RBP14.2□□□□□ -0.14
YBX3-212ENST00000542002 XRN1Q8IZH2 1706 aaKnown RBP14.2□□□□□ -0.14
YBX3-212ENST00000542002 IFT172Q9UG01 1749 aa14.2□□□□□ -0.14
YBX3-212ENST00000542002 MSH6P52701 1360 aa14.2□□□□□ -0.14
YBX3-212ENST00000542002 WAPLQ7Z5K2 1190 aa14.19□□□□□ -0.14
YBX3-212ENST00000542002 MYOM2P54296 1465 aa14.18□□□□□ -0.14
YBX3-212ENST00000542002 FAM135BQ49AJ0 1406 aa14.17□□□□□ -0.14
YBX3-212ENST00000542002 ASXL1Q8IXJ9 1541 aa14.17□□□□□ -0.14
YBX3-212ENST00000542002 NEUROD1Q13562 356 aa14.17□□□□□ -0.14
YBX3-212ENST00000542002 LRPPRCP42704 1394 aaKnown RBP14.17□□□□□ -0.14
YBX3-212ENST00000542002 ATF3P18847 181 aa14.16□□□□□ -0.14
YBX3-212ENST00000542002 CADPS2Q86UW7 1296 aa14.16□□□□□ -0.14
YBX3-212ENST00000542002 L3MBTL2Q969R5 705 aa14.16□□□□□ -0.14
YBX3-212ENST00000542002 PCGF6Q9BYE7 350 aa14.16□□□□□ -0.14
YBX3-212ENST00000542002 ABCC11Q96J66 1382 aa14.16□□□□□ -0.14
YBX3-212ENST00000542002 PRAG1Q86YV5 1406 aa14.15□□□□□ -0.14
YBX3-212ENST00000542002 PLEKHH1Q9ULM0 1364 aa14.15□□□□□ -0.14
YBX3-212ENST00000542002 PTCH1Q13635 1447 aa14.15□□□□□ -0.14
YBX3-212ENST00000542002 YTHDC2Q9H6S0 1430 aaKnown RBP14.15□□□□□ -0.14
YBX3-212ENST00000542002 STAC3Q96MF2 364 aa14.14□□□□□ -0.15
YBX3-212ENST00000542002 TECPR2O15040 1411 aa14.13□□□□□ -0.15
YBX3-212ENST00000542002 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.12□□□□□ -0.15
YBX3-212ENST00000542002 SIRT1Q96EB6 747 aa14.12□□□□□ -0.15
YBX3-212ENST00000542002 ADGRL3Q9HAR2 1447 aa14.12□□□□□ -0.15
YBX3-212ENST00000542002 NBPF1Q3BBV0 1214 aa14.11□□□□□ -0.15
YBX3-212ENST00000542002 BRINP3Q76B58 766 aa14.11□□□□□ -0.15
YBX3-212ENST00000542002 ADGRB1O14514 1584 aa14.1□□□□□ -0.15
YBX3-212ENST00000542002 MST1RQ04912 1400 aa14.1□□□□□ -0.15
YBX3-212ENST00000542002 TRAK1Q9UPV9 953 aa14.1□□□□□ -0.15
YBX3-212ENST00000542002 DCCP43146 1447 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms