RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 RAB3GAP2Q9H2M9 1393 aa17.46■□□□□ 0.39
CLIP1-208ENST00000537004 CLSPNQ9HAW4 1339 aa17.46■□□□□ 0.38
CLIP1-208ENST00000537004 BCANQ96GW7 911 aa17.44■□□□□ 0.38
CLIP1-208ENST00000537004 TMEM131LA2VDJ0 1609 aa17.44■□□□□ 0.38
CLIP1-208ENST00000537004 KDM5AP29375 1690 aaKnown RBP17.43■□□□□ 0.38
CLIP1-208ENST00000537004 ZFYVE9O95405 1425 aa17.43■□□□□ 0.38
CLIP1-208ENST00000537004 RIMS2Q9UQ26 1411 aa17.43■□□□□ 0.38
CLIP1-208ENST00000537004 PPP1R15AO75807 674 aaPredicted RBP17.42■□□□□ 0.38
CLIP1-208ENST00000537004 MYO5BQ9ULV0 1848 aa17.41■□□□□ 0.38
CLIP1-208ENST00000537004 UBAP1LF5GYI3 381 aa17.41■□□□□ 0.38
CLIP1-208ENST00000537004 MPHOSPH9Q99550 1183 aa17.39■□□□□ 0.37
CLIP1-208ENST00000537004 ZNF326Q5BKZ1 582 aaKnown RBP17.38■□□□□ 0.37
CLIP1-208ENST00000537004 CPS1P31327 1500 aa17.38■□□□□ 0.37
CLIP1-208ENST00000537004 SPHKAPQ2M3C7 1700 aa17.38■□□□□ 0.37
CLIP1-208ENST00000537004 STRCP1A6NGW2 1772 aa17.38■□□□□ 0.37
CLIP1-208ENST00000537004 IQSEC2Q5JU85 1478 aa17.37■□□□□ 0.37
CLIP1-208ENST00000537004 HDGFP51858 240 aaKnown RBP17.37■□□□□ 0.37
CLIP1-208ENST00000537004 RBM33Q96EV2 1170 aaKnown RBP17.37■□□□□ 0.37
CLIP1-208ENST00000537004 PLEKHG1Q9ULL1 1385 aa17.36■□□□□ 0.37
CLIP1-208ENST00000537004 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.36■□□□□ 0.37
CLIP1-208ENST00000537004 TRPM2O94759 1503 aa17.36■□□□□ 0.37
CLIP1-208ENST00000537004 CLTCL1P53675 1640 aa17.35■□□□□ 0.37
CLIP1-208ENST00000537004 LRRC7Q96NW7 1537 aa17.35■□□□□ 0.37
CLIP1-208ENST00000537004 PIP4K2BP78356 416 aa17.33■□□□□ 0.37
CLIP1-208ENST00000537004 KCNA6P17658 529 aa17.33■□□□□ 0.36
CLIP1-208ENST00000537004 SCAF1Q9H7N4 1312 aaKnown RBP17.32■□□□□ 0.36
CLIP1-208ENST00000537004 ADAMTS13Q76LX8 1427 aa17.31■□□□□ 0.36
CLIP1-208ENST00000537004 TBX22Q9Y458 520 aa17.3■□□□□ 0.36
CLIP1-208ENST00000537004 TOM1O60784 492 aa17.3■□□□□ 0.36
CLIP1-208ENST00000537004 PROSER2Q86WR7 435 aaPredicted RBP17.3■□□□□ 0.36
CLIP1-208ENST00000537004 TMEM94Q12767 1356 aa17.29■□□□□ 0.36
CLIP1-208ENST00000537004 RGL3Q3MIN7 710 aa17.28■□□□□ 0.36
CLIP1-208ENST00000537004 CCDC144AA2RUR9 1427 aa17.26■□□□□ 0.35
CLIP1-208ENST00000537004 ALKQ9UM73 1620 aa17.26■□□□□ 0.35
CLIP1-208ENST00000537004 NEXMIFQ5QGS0 1516 aa17.26■□□□□ 0.35
CLIP1-208ENST00000537004 PTPRUQ92729 1446 aa17.23■□□□□ 0.35
CLIP1-208ENST00000537004 AMOTL2Q9Y2J4 779 aa17.23■□□□□ 0.35
CLIP1-208ENST00000537004 METP08581 1390 aa17.23■□□□□ 0.35
CLIP1-208ENST00000537004 KIF1BO60333 1816 aa17.22■□□□□ 0.35
CLIP1-208ENST00000537004 HSPA1LP34931 641 aa17.22■□□□□ 0.35
CLIP1-208ENST00000537004 NRXN3Q9Y4C0 1643 aa17.22■□□□□ 0.35
CLIP1-208ENST00000537004 ZNF316A6NFI3 1004 aaPredicted RBP17.21■□□□□ 0.35
CLIP1-208ENST00000537004 VGFO15240 615 aaPredicted RBP17.21■□□□□ 0.35
CLIP1-208ENST00000537004 NWD1Q149M9 1564 aa17.21■□□□□ 0.35
CLIP1-208ENST00000537004 ACIN1Q9UKV3 1341 aaKnown RBP17.21■□□□□ 0.35
CLIP1-208ENST00000537004 SPATA31E1Q6ZUB1 1445 aa17.2■□□□□ 0.34
CLIP1-208ENST00000537004 NKTRP30414 1462 aaKnown RBP17.2■□□□□ 0.34
CLIP1-208ENST00000537004 XIRP1Q702N8 1843 aaKnown RBP17.2■□□□□ 0.34
CLIP1-208ENST00000537004 SETBP1Q9Y6X0 1596 aa17.2■□□□□ 0.34
CLIP1-208ENST00000537004 RPGRIP1LQ68CZ1 1315 aa17.19■□□□□ 0.34
CLIP1-208ENST00000537004 ADGRF5Q8IZF2 1346 aa17.19■□□□□ 0.34
CLIP1-208ENST00000537004 CHD2O14647 1828 aaKnown RBP17.19■□□□□ 0.34
CLIP1-208ENST00000537004 PIK3R4Q99570 1358 aa17.18■□□□□ 0.34
CLIP1-208ENST00000537004 DIP2AQ14689 1571 aa17.18■□□□□ 0.34
CLIP1-208ENST00000537004 C14orf37Q86TY3 774 aa17.17■□□□□ 0.34
CLIP1-208ENST00000537004 ANKRD30BQ9BXX2 1392 aa17.16■□□□□ 0.34
CLIP1-208ENST00000537004 MSH6P52701 1360 aa17.15■□□□□ 0.34
CLIP1-208ENST00000537004 DIEXFQ68CQ4 756 aaKnown RBP17.14■□□□□ 0.33
CLIP1-208ENST00000537004 SLAIN2Q9P270 581 aa17.12■□□□□ 0.33
CLIP1-208ENST00000537004 PPLO60437 1756 aa17.12■□□□□ 0.33
CLIP1-208ENST00000537004 SIN3AQ96ST3 1273 aa17.11■□□□□ 0.33
CLIP1-208ENST00000537004 C19orf44Q9H6X5 657 aa17.11■□□□□ 0.33
CLIP1-208ENST00000537004 TMEM132EQ6IEE7 984 aa17.1■□□□□ 0.33
CLIP1-208ENST00000537004 XRN1Q8IZH2 1706 aaKnown RBP17.09■□□□□ 0.33
CLIP1-208ENST00000537004 ROBO2Q9HCK4 1378 aa17.08■□□□□ 0.33
CLIP1-208ENST00000537004 NEUROD1Q13562 356 aa17.08■□□□□ 0.33
CLIP1-208ENST00000537004 STK26Q9P289 416 aa17.08■□□□□ 0.33
CLIP1-208ENST00000537004 FAM135BQ49AJ0 1406 aa17.08■□□□□ 0.32
CLIP1-208ENST00000537004 NCOA3Q9Y6Q9 1424 aa17.08■□□□□ 0.32
CLIP1-208ENST00000537004 ATF3P18847 181 aa17.08■□□□□ 0.32
CLIP1-208ENST00000537004 KDM2AQ9Y2K7 1162 aa17.07■□□□□ 0.32
CLIP1-208ENST00000537004 SETD1AO15047 1707 aaKnown RBP17.07■□□□□ 0.32
CLIP1-208ENST00000537004 PIK3C2GO75747 1445 aa17.06■□□□□ 0.32
CLIP1-208ENST00000537004 CADPS2Q86UW7 1296 aa17.06■□□□□ 0.32
CLIP1-208ENST00000537004 CFAP70Q5T0N1 1121 aa17.06■□□□□ 0.32
CLIP1-208ENST00000537004 TIMELESSQ9UNS1 1208 aa17.06■□□□□ 0.32
CLIP1-208ENST00000537004 DISP3Q9P2K9 1392 aa17.05■□□□□ 0.32
CLIP1-208ENST00000537004 PELP1Q8IZL8 1130 aaKnown RBP17.05■□□□□ 0.32
CLIP1-208ENST00000537004 DCAF11Q8TEB1 546 aa17.05■□□□□ 0.32
CLIP1-208ENST00000537004 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.04■□□□□ 0.32
CLIP1-208ENST00000537004 IFT172Q9UG01 1749 aa17.04■□□□□ 0.32
CLIP1-208ENST00000537004 ROBO1Q9Y6N7 1651 aa17.03■□□□□ 0.32
CLIP1-208ENST00000537004 WAPLQ7Z5K2 1190 aa17.03■□□□□ 0.32
CLIP1-208ENST00000537004 C14orf93Q9H972 538 aaKnown RBP17.03■□□□□ 0.32
CLIP1-208ENST00000537004 PTCH1Q13635 1447 aa17.02■□□□□ 0.32
CLIP1-208ENST00000537004 ASXL1Q8IXJ9 1541 aa17.01■□□□□ 0.31
CLIP1-208ENST00000537004 NRXN1Q9ULB1 1477 aa17.01■□□□□ 0.31
CLIP1-208ENST00000537004 ADGRL3Q9HAR2 1447 aa17.01■□□□□ 0.31
CLIP1-208ENST00000537004 MYOM2P54296 1465 aa17■□□□□ 0.31
CLIP1-208ENST00000537004 BRINP3Q76B58 766 aa16.99■□□□□ 0.31
CLIP1-208ENST00000537004 LRPPRCP42704 1394 aaKnown RBP16.99■□□□□ 0.31
CLIP1-208ENST00000537004 PLEKHH1Q9ULM0 1364 aa16.99■□□□□ 0.31
CLIP1-208ENST00000537004 DCCP43146 1447 aa16.98■□□□□ 0.31
CLIP1-208ENST00000537004 MST1RQ04912 1400 aa16.98■□□□□ 0.31
CLIP1-208ENST00000537004 TONSLQ96HA7 1378 aa16.98■□□□□ 0.31
CLIP1-208ENST00000537004 PRAG1Q86YV5 1406 aa16.97■□□□□ 0.31
CLIP1-208ENST00000537004 YTHDC2Q9H6S0 1430 aaKnown RBP16.97■□□□□ 0.31
CLIP1-208ENST00000537004 ABCC11Q96J66 1382 aa16.97■□□□□ 0.31
CLIP1-208ENST00000537004 DDX17Q92841 729 aaKnown RBP16.97■□□□□ 0.31
CLIP1-208ENST00000537004 NALCNQ8IZF0 1738 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms