RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 ZMYM4Q5VZL5 1548 aa17.53■□□□□ 0.4
LDLR-203ENST00000535915 KIDINS220Q9ULH0 1771 aa17.53■□□□□ 0.4
LDLR-203ENST00000535915 INSRP06213 1382 aa17.52■□□□□ 0.4
LDLR-203ENST00000535915 UGGT1Q9NYU2 1555 aa17.52■□□□□ 0.4
LDLR-203ENST00000535915 EIF3AQ14152 1382 aaKnown RBP17.52■□□□□ 0.4
LDLR-203ENST00000535915 NEURL4Q96JN8 1562 aa17.51■□□□□ 0.39
LDLR-203ENST00000535915 CDCA7LQ96GN5 454 aa17.51■□□□□ 0.39
LDLR-203ENST00000535915 MYOM1P52179 1685 aa17.51■□□□□ 0.39
LDLR-203ENST00000535915 MAP3K4Q9Y6R4 1608 aa17.51■□□□□ 0.39
LDLR-203ENST00000535915 KDM5AP29375 1690 aaKnown RBP17.5■□□□□ 0.39
LDLR-203ENST00000535915 EFCAB6Q5THR3 1501 aa17.5■□□□□ 0.39
LDLR-203ENST00000535915 ABCA6Q8N139 1617 aa17.49■□□□□ 0.39
LDLR-203ENST00000535915 PRKCSHP14314 528 aaPredicted RBP17.49■□□□□ 0.39
LDLR-203ENST00000535915 IFT172Q9UG01 1749 aa17.49■□□□□ 0.39
LDLR-203ENST00000535915 PPRC1Q5VV67 1664 aaKnown RBP17.48■□□□□ 0.39
LDLR-203ENST00000535915 CFAP65Q6ZU64 1925 aaKnown RBP17.48■□□□□ 0.39
LDLR-203ENST00000535915 PPP2R1AP30153 589 aa17.48■□□□□ 0.39
LDLR-203ENST00000535915 MROH2AA6NES4 1674 aa17.48■□□□□ 0.39
LDLR-203ENST00000535915 ZNF518AQ6AHZ1 1483 aa17.48■□□□□ 0.39
LDLR-203ENST00000535915 AMER1Q5JTC6 1135 aaPredicted RBP17.47■□□□□ 0.39
LDLR-203ENST00000535915 ASXL1Q8IXJ9 1541 aa17.47■□□□□ 0.39
LDLR-203ENST00000535915 ERICH6Q7L0X2 663 aa17.47■□□□□ 0.39
LDLR-203ENST00000535915 MYOM2P54296 1465 aa17.47■□□□□ 0.39
LDLR-203ENST00000535915 CFAP70Q5T0N1 1121 aa17.46■□□□□ 0.39
LDLR-203ENST00000535915 EXOC6Q8TAG9 804 aa17.46■□□□□ 0.39
LDLR-203ENST00000535915 ADAMTS8Q9UP79 889 aa17.46■□□□□ 0.39
LDLR-203ENST00000535915 NPM1P06748 294 aaKnown RBP eCLIP17.45■□□□□ 0.38
LDLR-203ENST00000535915 ADGRF5Q8IZF2 1346 aa17.45■□□□□ 0.38
LDLR-203ENST00000535915 WDR43Q15061 677 aaKnown RBP eCLIP17.45■□□□□ 0.38
LDLR-203ENST00000535915 CFAP74Q9C0B2 1584 aa17.43■□□□□ 0.38
LDLR-203ENST00000535915 LMTK2Q8IWU2 1503 aa17.42■□□□□ 0.38
LDLR-203ENST00000535915 SLC24A1O60721 1099 aa17.41■□□□□ 0.38
LDLR-203ENST00000535915 ERVK-7P63135 1459 aa17.4■□□□□ 0.38
LDLR-203ENST00000535915 CHGAP10645 457 aaKnown RBP17.4■□□□□ 0.38
LDLR-203ENST00000535915 PIK3C2GO75747 1445 aa17.4■□□□□ 0.38
LDLR-203ENST00000535915 CD109Q6YHK3 1445 aa17.4■□□□□ 0.38
LDLR-203ENST00000535915 NPC1L1Q9UHC9 1359 aa17.4■□□□□ 0.38
LDLR-203ENST00000535915 PLIN1O60240 522 aa17.39■□□□□ 0.37
LDLR-203ENST00000535915 ADGRB3O60242 1522 aa17.38■□□□□ 0.37
LDLR-203ENST00000535915 NOS1P29475 1434 aa17.38■□□□□ 0.37
LDLR-203ENST00000535915 POGZQ7Z3K3 1410 aa17.38■□□□□ 0.37
LDLR-203ENST00000535915 MYO3AQ8NEV4 1616 aa17.38■□□□□ 0.37
LDLR-203ENST00000535915 NRXN1Q9ULB1 1477 aa17.38■□□□□ 0.37
LDLR-203ENST00000535915 HECW2Q9P2P5 1572 aa17.37■□□□□ 0.37
LDLR-203ENST00000535915 GGT6Q6P531 493 aa17.37■□□□□ 0.37
LDLR-203ENST00000535915 PPLO60437 1756 aa17.37■□□□□ 0.37
LDLR-203ENST00000535915 OSCARQ8IYS5 282 aa17.37■□□□□ 0.37
LDLR-203ENST00000535915 PLEKHH1Q9ULM0 1364 aa17.37■□□□□ 0.37
LDLR-203ENST00000535915 FRMPD1Q5SYB0 1578 aa17.36■□□□□ 0.37
LDLR-203ENST00000535915 MLH3Q9UHC1 1453 aa17.36■□□□□ 0.37
LDLR-203ENST00000535915 NPATQ14207 1427 aa17.35■□□□□ 0.37
LDLR-203ENST00000535915 SETBP1Q9Y6X0 1596 aa17.34■□□□□ 0.37
LDLR-203ENST00000535915 CENPJQ9HC77 1338 aaPredicted RBP17.32■□□□□ 0.36
LDLR-203ENST00000535915 GOLGA2Q08379 1002 aa17.32■□□□□ 0.36
LDLR-203ENST00000535915 CRBNQ96SW2 442 aa17.32■□□□□ 0.36
LDLR-203ENST00000535915 CARD14Q9BXL6 1004 aa17.32■□□□□ 0.36
LDLR-203ENST00000535915 QRICH2Q9H0J4 1663 aa17.32■□□□□ 0.36
LDLR-203ENST00000535915 SBNO2Q9Y2G9 1366 aa17.32■□□□□ 0.36
LDLR-203ENST00000535915 CCDC146Q8IYE0 955 aa17.32■□□□□ 0.36
LDLR-203ENST00000535915 ANP32AP39687 249 aaKnown RBP17.31■□□□□ 0.36
LDLR-203ENST00000535915 DUSP27Q5VZP5 1158 aa17.31■□□□□ 0.36
LDLR-203ENST00000535915 ZC3H13Q5T200 1668 aaKnown RBP17.31■□□□□ 0.36
LDLR-203ENST00000535915 ZNF521Q96K83 1311 aa17.31■□□□□ 0.36
LDLR-203ENST00000535915 TRAK1Q9UPV9 953 aa17.31■□□□□ 0.36
LDLR-203ENST00000535915 TCERG1O14776 1098 aaKnown RBP17.3■□□□□ 0.36
LDLR-203ENST00000535915 CAMSAP1Q5T5Y3 1602 aa17.3■□□□□ 0.36
LDLR-203ENST00000535915 ABCC3O15438 1527 aa17.29■□□□□ 0.36
LDLR-203ENST00000535915 NOP58Q9Y2X3 529 aaKnown RBP17.29■□□□□ 0.36
LDLR-203ENST00000535915 C14orf93Q9H972 538 aaKnown RBP17.28■□□□□ 0.36
LDLR-203ENST00000535915 SIGLEC1Q9BZZ2 1709 aa17.28■□□□□ 0.36
LDLR-203ENST00000535915 C20orf194Q5TEA3 1177 aa17.27■□□□□ 0.36
LDLR-203ENST00000535915 APAF1O14727 1248 aa17.27■□□□□ 0.35
LDLR-203ENST00000535915 TMEM132EQ6IEE7 984 aa17.27■□□□□ 0.35
LDLR-203ENST00000535915 ADGRB1O14514 1584 aa17.26■□□□□ 0.35
LDLR-203ENST00000535915 RAPGEF3O95398 923 aa17.26■□□□□ 0.35
LDLR-203ENST00000535915 SLFN5Q08AF3 891 aa17.26■□□□□ 0.35
LDLR-203ENST00000535915 RPGRIP1LQ68CZ1 1315 aa17.26■□□□□ 0.35
LDLR-203ENST00000535915 IPO9Q96P70 1041 aaKnown RBP17.25■□□□□ 0.35
LDLR-203ENST00000535915 NEO1Q92859 1461 aa17.24■□□□□ 0.35
LDLR-203ENST00000535915 NSD3Q9BZ95 1437 aa17.24■□□□□ 0.35
LDLR-203ENST00000535915 PAK3O75914 559 aaPredicted RBP17.23■□□□□ 0.35
LDLR-203ENST00000535915 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.23■□□□□ 0.35
LDLR-203ENST00000535915 SLC12A5Q9H2X9 1139 aa17.23■□□□□ 0.35
LDLR-203ENST00000535915 DIP2CQ9Y2E4 1556 aa17.22■□□□□ 0.35
LDLR-203ENST00000535915 PIK3C2BO00750 1634 aa17.22■□□□□ 0.35
LDLR-203ENST00000535915 GLI2P10070 1586 aa17.22■□□□□ 0.35
LDLR-203ENST00000535915 MS4A1P11836 297 aa17.22■□□□□ 0.35
LDLR-203ENST00000535915 PDE4AP27815 886 aa17.22■□□□□ 0.35
LDLR-203ENST00000535915 NUTM2DQ5VT03 806 aaPredicted RBP17.22■□□□□ 0.35
LDLR-203ENST00000535915 MORC1Q86VD1 984 aa17.21■□□□□ 0.35
LDLR-203ENST00000535915 TRMT2AQ8IZ69 625 aaKnown RBP17.21■□□□□ 0.35
LDLR-203ENST00000535915 POLR3AO14802 1390 aaPredicted RBP17.21■□□□□ 0.35
LDLR-203ENST00000535915 NKTRP30414 1462 aaKnown RBP17.21■□□□□ 0.34
LDLR-203ENST00000535915 RICTORQ6R327 1708 aa17.2■□□□□ 0.34
LDLR-203ENST00000535915 ARHGEF28Q8N1W1 1705 aaKnown RBP17.2■□□□□ 0.34
LDLR-203ENST00000535915 SPINK5Q9NQ38 1064 aaPredicted RBP17.2■□□□□ 0.34
LDLR-203ENST00000535915 TNNT2P45379 298 aaPredicted RBP17.2■□□□□ 0.34
LDLR-203ENST00000535915 SHPRHQ149N8 1683 aa17.19■□□□□ 0.34
LDLR-203ENST00000535915 NPM2Q86SE8 214 aaKnown RBP17.19■□□□□ 0.34
LDLR-203ENST00000535915 BACH2Q9BYV9 841 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms