RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 HDGFP51858 240 aaKnown RBP33.58■■■□□ 2.97
SFSWAP-204ENST00000535399 ABCF1Q8NE71 845 aaKnown RBP eCLIP33.57■■■□□ 2.96
SFSWAP-204ENST00000535399 LTBP4Q8N2S1 1624 aa33.57■■■□□ 2.96
SFSWAP-204ENST00000535399 CCDC144AA2RUR9 1427 aa33.54■■■□□ 2.96
SFSWAP-204ENST00000535399 PLEKHG1Q9ULL1 1385 aa33.53■■■□□ 2.96
SFSWAP-204ENST00000535399 PPP1R15AO75807 674 aaPredicted RBP33.53■■■□□ 2.96
SFSWAP-204ENST00000535399 ZNF326Q5BKZ1 582 aaKnown RBP33.53■■■□□ 2.96
SFSWAP-204ENST00000535399 NUTM2DQ5VT03 806 aaPredicted RBP33.53■■■□□ 2.96
SFSWAP-204ENST00000535399 CERKQ8TCT0 537 aa33.52■■■□□ 2.96
SFSWAP-204ENST00000535399 ANKRD30BQ9BXX2 1392 aa33.48■■■□□ 2.95
SFSWAP-204ENST00000535399 SLC26A8Q96RN1 970 aa33.47■■■□□ 2.95
SFSWAP-204ENST00000535399 KIF1BO60333 1816 aa33.46■■■□□ 2.95
SFSWAP-204ENST00000535399 SENP3Q9H4L4 574 aaPredicted RBP33.45■■■□□ 2.95
SFSWAP-204ENST00000535399 SPATA31E1Q6ZUB1 1445 aa33.45■■■□□ 2.94
SFSWAP-204ENST00000535399 NEXMIFQ5QGS0 1516 aa33.44■■■□□ 2.94
SFSWAP-204ENST00000535399 BCANQ96GW7 911 aa33.44■■■□□ 2.94
SFSWAP-204ENST00000535399 RPGRIP1LQ68CZ1 1315 aa33.42■■■□□ 2.94
SFSWAP-204ENST00000535399 ADAMTS13Q76LX8 1427 aa33.4■■■□□ 2.94
SFSWAP-204ENST00000535399 CPS1P31327 1500 aa33.38■■■□□ 2.93
SFSWAP-204ENST00000535399 RGL3Q3MIN7 710 aa33.37■■■□□ 2.93
SFSWAP-204ENST00000535399 TBX22Q9Y458 520 aa33.37■■■□□ 2.93
SFSWAP-204ENST00000535399 VGFO15240 615 aaPredicted RBP33.33■■■□□ 2.93
SFSWAP-204ENST00000535399 KCNA6P17658 529 aa33.32■■■□□ 2.92
SFSWAP-204ENST00000535399 SETBP1Q9Y6X0 1596 aa33.32■■■□□ 2.92
SFSWAP-204ENST00000535399 IQSEC2Q5JU85 1478 aa33.31■■■□□ 2.92
SFSWAP-204ENST00000535399 STRCP1A6NGW2 1772 aa33.31■■■□□ 2.92
SFSWAP-204ENST00000535399 DIP2AQ14689 1571 aa33.29■■■□□ 2.92
SFSWAP-204ENST00000535399 FBXO41Q8TF61 875 aa33.28■■■□□ 2.92
SFSWAP-204ENST00000535399 NRXN3Q9Y4C0 1643 aa33.28■■■□□ 2.92
SFSWAP-204ENST00000535399 LRRC7Q96NW7 1537 aa33.26■■■□□ 2.91
SFSWAP-204ENST00000535399 PPLO60437 1756 aa33.25■■■□□ 2.91
SFSWAP-204ENST00000535399 PIK3R4Q99570 1358 aa33.24■■■□□ 2.91
SFSWAP-204ENST00000535399 ADGRF5Q8IZF2 1346 aa33.24■■■□□ 2.91
SFSWAP-204ENST00000535399 NWD1Q149M9 1564 aa33.23■■■□□ 2.91
SFSWAP-204ENST00000535399 DHX57Q6P158 1386 aaKnown RBP33.22■■■□□ 2.91
SFSWAP-204ENST00000535399 ILDR1Q86SU0 546 aaPredicted RBP33.21■■■□□ 2.91
SFSWAP-204ENST00000535399 METP08581 1390 aa33.2■■■□□ 2.9
SFSWAP-204ENST00000535399 PTPRUQ92729 1446 aa33.19■■■□□ 2.9
SFSWAP-204ENST00000535399 NKTRP30414 1462 aaKnown RBP33.18■■■□□ 2.9
SFSWAP-204ENST00000535399 IFT172Q9UG01 1749 aa33.17■■■□□ 2.9
SFSWAP-204ENST00000535399 CHD2O14647 1828 aaKnown RBP33.15■■■□□ 2.9
SFSWAP-204ENST00000535399 PROSER2Q86WR7 435 aaPredicted RBP33.14■■■□□ 2.9
SFSWAP-204ENST00000535399 PCGF6Q9BYE7 350 aa33.14■■■□□ 2.9
SFSWAP-204ENST00000535399 AMOTL2Q9Y2J4 779 aa33.14■■■□□ 2.9
SFSWAP-204ENST00000535399 ALKQ9UM73 1620 aa33.13■■■□□ 2.89
SFSWAP-204ENST00000535399 TMEM94Q12767 1356 aa33.13■■■□□ 2.89
SFSWAP-204ENST00000535399 MYOM2P54296 1465 aa33.12■■■□□ 2.89
SFSWAP-204ENST00000535399 PIK3C2GO75747 1445 aa33.11■■■□□ 2.89
SFSWAP-204ENST00000535399 RBM33Q96EV2 1170 aaKnown RBP33.1■■■□□ 2.89
SFSWAP-204ENST00000535399 NRXN1Q9ULB1 1477 aa33.1■■■□□ 2.89
SFSWAP-204ENST00000535399 UBAP1LF5GYI3 381 aa33.08■■■□□ 2.89
SFSWAP-204ENST00000535399 SETD1AO15047 1707 aaKnown RBP33.07■■■□□ 2.88
SFSWAP-204ENST00000535399 DCAF11Q8TEB1 546 aa33.06■■■□□ 2.88
SFSWAP-204ENST00000535399 SIN3AQ96ST3 1273 aa33.05■■■□□ 2.88
SFSWAP-204ENST00000535399 STAC3Q96MF2 364 aa33.04■■■□□ 2.88
SFSWAP-204ENST00000535399 XRN1Q8IZH2 1706 aaKnown RBP33.04■■■□□ 2.88
SFSWAP-204ENST00000535399 KDM2AQ9Y2K7 1162 aa33.03■■■□□ 2.88
SFSWAP-204ENST00000535399 C14orf93Q9H972 538 aaKnown RBP33.02■■■□□ 2.88
SFSWAP-204ENST00000535399 XIRP1Q702N8 1843 aaKnown RBP33.02■■■□□ 2.88
SFSWAP-204ENST00000535399 TOM1O60784 492 aa33.01■■■□□ 2.87
SFSWAP-204ENST00000535399 NCOA3Q9Y6Q9 1424 aa33■■■□□ 2.87
SFSWAP-204ENST00000535399 CFAP70Q5T0N1 1121 aa32.98■■■□□ 2.87
SFSWAP-204ENST00000535399 ASXL1Q8IXJ9 1541 aa32.97■■■□□ 2.87
SFSWAP-204ENST00000535399 PRAG1Q86YV5 1406 aa32.96■■■□□ 2.87
SFSWAP-204ENST00000535399 NEUROD1Q13562 356 aa32.96■■■□□ 2.87
SFSWAP-204ENST00000535399 TMEM132EQ6IEE7 984 aa32.95■■■□□ 2.87
SFSWAP-204ENST00000535399 PTCH1Q13635 1447 aa32.94■■■□□ 2.86
SFSWAP-204ENST00000535399 LRPPRCP42704 1394 aaKnown RBP32.93■■■□□ 2.86
SFSWAP-204ENST00000535399 MSH6P52701 1360 aa32.93■■■□□ 2.86
SFSWAP-204ENST00000535399 ROBO2Q9HCK4 1378 aa32.93■■■□□ 2.86
SFSWAP-204ENST00000535399 PIP4K2BP78356 416 aa32.9■■■□□ 2.86
SFSWAP-204ENST00000535399 L3MBTL2Q969R5 705 aa32.9■■■□□ 2.86
SFSWAP-204ENST00000535399 ABCC11Q96J66 1382 aa32.89■■■□□ 2.86
SFSWAP-204ENST00000535399 C14orf37Q86TY3 774 aa32.89■■■□□ 2.86
SFSWAP-204ENST00000535399 C19orf44Q9H6X5 657 aa32.88■■■□□ 2.85
SFSWAP-204ENST00000535399 STK26Q9P289 416 aa32.88■■■□□ 2.85
SFSWAP-204ENST00000535399 TECPR2O15040 1411 aa32.87■■■□□ 2.85
SFSWAP-204ENST00000535399 YTHDC2Q9H6S0 1430 aaKnown RBP32.87■■■□□ 2.85
SFSWAP-204ENST00000535399 LAMC1P11047 1609 aa32.87■■■□□ 2.85
SFSWAP-204ENST00000535399 SCAF1Q9H7N4 1312 aaKnown RBP32.84■■■□□ 2.85
SFSWAP-204ENST00000535399 ADGRB1O14514 1584 aa32.82■■■□□ 2.84
SFSWAP-204ENST00000535399 ADGRL3Q9HAR2 1447 aa32.81■■■□□ 2.84
SFSWAP-204ENST00000535399 CADPS2Q86UW7 1296 aa32.79■■■□□ 2.84
SFSWAP-204ENST00000535399 DCCP43146 1447 aa32.78■■■□□ 2.84
SFSWAP-204ENST00000535399 ATF3P18847 181 aa32.78■■■□□ 2.84
SFSWAP-204ENST00000535399 SIRT1Q96EB6 747 aa32.78■■■□□ 2.84
SFSWAP-204ENST00000535399 SIPA1L2Q9P2F8 1722 aaPredicted RBP32.77■■■□□ 2.84
SFSWAP-204ENST00000535399 WAPLQ7Z5K2 1190 aa32.77■■■□□ 2.84
SFSWAP-204ENST00000535399 SLAIN2Q9P270 581 aa32.77■■■□□ 2.84
SFSWAP-204ENST00000535399 KNDC1Q76NI1 1749 aa32.76■■■□□ 2.83
SFSWAP-204ENST00000535399 PLEKHH1Q9ULM0 1364 aa32.75■■■□□ 2.83
SFSWAP-204ENST00000535399 FAM135BQ49AJ0 1406 aa32.75■■■□□ 2.83
SFSWAP-204ENST00000535399 NALCNQ8IZF0 1738 aa32.71■■■□□ 2.83
SFSWAP-204ENST00000535399 TONSLQ96HA7 1378 aa32.7■■■□□ 2.83
SFSWAP-204ENST00000535399 NBPF1Q3BBV0 1214 aa32.7■■■□□ 2.83
SFSWAP-204ENST00000535399 DLC1Q96QB1 1528 aa32.7■■■□□ 2.83
SFSWAP-204ENST00000535399 HSPA1LP34931 641 aa32.69■■■□□ 2.82
SFSWAP-204ENST00000535399 TRAK1Q9UPV9 953 aa32.69■■■□□ 2.82
SFSWAP-204ENST00000535399 CLSPNQ9HAW4 1339 aa32.68■■■□□ 2.82
SFSWAP-204ENST00000535399 PRAM1Q96QH2 718 aa32.67■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms