RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 NISCHQ9Y2I1 1504 aa55.08■■■■■ 6.41
SFSWAP-204ENST00000535399 CCDC180Q9P1Z9 1646 aa48.81■■■■■ 5.4
SFSWAP-204ENST00000535399 ABCC9O60706 1549 aa47.76■■■■■ 5.24
SFSWAP-204ENST00000535399 DCAF8L2P0C7V8 631 aa45.97■■■■■ 4.95
SFSWAP-204ENST00000535399 NACADO15069 1562 aa45.93■■■■■ 4.94
SFSWAP-204ENST00000535399 RB1CC1Q8TDY2 1594 aa45.93■■■■■ 4.94
SFSWAP-204ENST00000535399 ZCCHC6Q5VYS8 1495 aaKnown RBP45.91■■■■■ 4.94
SFSWAP-204ENST00000535399 MYO15BQ96JP2 1530 aa45.72■■■■■ 4.91
SFSWAP-204ENST00000535399 DCAF1Q9Y4B6 1507 aa45.57■■■■■ 4.88
SFSWAP-204ENST00000535399 UNC13AQ9UPW8 1703 aa44.8■■■■■ 4.76
SFSWAP-204ENST00000535399 PABPN1Q86U42 306 aaKnown RBP eCLIP44.7■■■■■ 4.75
SFSWAP-204ENST00000535399 SCRIBQ14160 1630 aa44.6■■■■■ 4.73
SFSWAP-204ENST00000535399 BICRAQ9NZM4 1560 aa44.59■■■■■ 4.73
SFSWAP-204ENST00000535399 SHROOM4Q9ULL8 1493 aa44.11■■■■■ 4.65
SFSWAP-204ENST00000535399 DNAJC5BQ9UF47 199 aa43.83■■■■■ 4.61
SFSWAP-204ENST00000535399 EIF4G1Q04637 1599 aaKnown RBP43.38■■■■■ 4.54
SFSWAP-204ENST00000535399 CC2D2AQ9P2K1 1620 aa43.16■■■■■ 4.5
SFSWAP-204ENST00000535399 CECR2Q9BXF3 1484 aa42.94■■■■■ 4.46
SFSWAP-204ENST00000535399 SMARCA4P51532 1647 aa42.67■■■■■ 4.42
SFSWAP-204ENST00000535399 BAZ1AQ9NRL2 1556 aaPredicted RBP42.64■■■■■ 4.42
SFSWAP-204ENST00000535399 ATAD2BQ9ULI0 1458 aa42.48■■■■■ 4.39
SFSWAP-204ENST00000535399 MROH2BQ7Z745 1585 aa42.46■■■■■ 4.39
SFSWAP-204ENST00000535399 NCAPD3P42695 1498 aa42.44■■■■■ 4.38
SFSWAP-204ENST00000535399 SMARCA2P51531 1590 aa42.37■■■■■ 4.37
SFSWAP-204ENST00000535399 PEG3Q9GZU2 1588 aa42.27■■■■■ 4.36
SFSWAP-204ENST00000535399 HMGXB3Q12766 1538 aa42.19■■■■■ 4.34
SFSWAP-204ENST00000535399 BAZ1BQ9UIG0 1483 aaKnown RBP42.09■■■■■ 4.33
SFSWAP-204ENST00000535399 RSF1Q96T23 1441 aaPredicted RBP42.04■■■■■ 4.32
SFSWAP-204ENST00000535399 WIZO95785 1651 aa41.94■■■■■ 4.3
SFSWAP-204ENST00000535399 TOP2AP11388 1531 aaKnown RBP41.54■■■■■ 4.24
SFSWAP-204ENST00000535399 NESP48681 1621 aa41.37■■■■■ 4.21
SFSWAP-204ENST00000535399 LAMC3Q9Y6N6 1575 aa41.22■■■■■ 4.19
SFSWAP-204ENST00000535399 CADPSQ9ULU8 1353 aa41.22■■■■■ 4.19
SFSWAP-204ENST00000535399 ERCC6Q03468 1493 aa41.13■■■■■ 4.17
SFSWAP-204ENST00000535399 CCDC88BA6NC98 1476 aa41.09■■■■■ 4.17
SFSWAP-204ENST00000535399 SUPT5HO00267 1087 aaKnown RBP41.04■■■■■ 4.16
SFSWAP-204ENST00000535399 PDS5BQ9NTI5 1447 aa41■■■■■ 4.15
SFSWAP-204ENST00000535399 CFTRP13569 1480 aa40.98■■■■■ 4.15
SFSWAP-204ENST00000535399 KIF21AQ7Z4S6 1674 aa40.77■■■■■ 4.12
SFSWAP-204ENST00000535399 FANCD2Q9BXW9 1451 aa40.71■■■■■ 4.11
SFSWAP-204ENST00000535399 THOC2Q8NI27 1593 aaKnown RBP40.67■■■■■ 4.1
SFSWAP-204ENST00000535399 CUX2O14529 1486 aa40.67■■■■■ 4.1
SFSWAP-204ENST00000535399 CEP164Q9UPV0 1460 aa40.63■■■■■ 4.09
SFSWAP-204ENST00000535399 MRC2Q9UBG0 1479 aa40.57■■■■■ 4.08
SFSWAP-204ENST00000535399 PRDM2Q13029 1718 aa40.48■■■■■ 4.07
SFSWAP-204ENST00000535399 WDR62O43379 1518 aa40.42■■■■■ 4.06
SFSWAP-204ENST00000535399 URB2Q14146 1524 aaKnown RBP40.31■■■■■ 4.04
SFSWAP-204ENST00000535399 TOPBP1Q92547 1522 aa40.07■■■■■ 4.01
SFSWAP-204ENST00000535399 ABCC8Q09428 1581 aa40.05■■■■■ 4
SFSWAP-204ENST00000535399 DNMBPQ6XZF7 1577 aa40■■■■□ 3.99
SFSWAP-204ENST00000535399 CUX1P39880 1505 aa39.82■■■■□ 3.97
SFSWAP-204ENST00000535399 IFT140Q96RY7 1462 aa39.8■■■■□ 3.96
SFSWAP-204ENST00000535399 POLA1P09884 1462 aaPredicted RBP39.75■■■■□ 3.95
SFSWAP-204ENST00000535399 FGD5Q6ZNL6 1462 aa39.66■■■■□ 3.94
SFSWAP-204ENST00000535399 ZNF608Q9ULD9 1512 aaPredicted RBP39.63■■■■□ 3.93
SFSWAP-204ENST00000535399 SOGA1O94964 1423 aa39.6■■■■□ 3.93
SFSWAP-204ENST00000535399 WRNQ14191 1432 aaPredicted RBP eCLIP39.6■■■■□ 3.93
SFSWAP-204ENST00000535399 TARBP1Q13395 1621 aaKnown RBP39.59■■■■□ 3.93
SFSWAP-204ENST00000535399 RAD54L2Q9Y4B4 1467 aa39.59■■■■□ 3.93
SFSWAP-204ENST00000535399 SYNJ1O43426 1573 aa39.47■■■■□ 3.91
SFSWAP-204ENST00000535399 TOP2BQ02880 1626 aa39.46■■■■□ 3.91
SFSWAP-204ENST00000535399 BIVM-ERCC5R4GMW8 1640 aa39.43■■■■□ 3.9
SFSWAP-204ENST00000535399 AQRO60306 1485 aaKnown RBP eCLIP39.42■■■■□ 3.91e-6■■□□□ 11.9
SFSWAP-204ENST00000535399 EIF4G3O43432 1585 aaKnown RBP39.4■■■■□ 3.9
SFSWAP-204ENST00000535399 TDRD9Q8NDG6 1382 aaKnown RBP39.37■■■■□ 3.89
SFSWAP-204ENST00000535399 DNAJC5Q9H3Z4 198 aa39.36■■■■□ 3.89
SFSWAP-204ENST00000535399 ABCA10Q8WWZ4 1543 aa39.3■■■■□ 3.88
SFSWAP-204ENST00000535399 WDR97A6NE52 1622 aa39.25■■■■□ 3.87
SFSWAP-204ENST00000535399 GAPVD1Q14C86 1478 aa39.12■■■■□ 3.85
SFSWAP-204ENST00000535399 GRIN2BQ13224 1484 aa39.11■■■■□ 3.85
SFSWAP-204ENST00000535399 ABCA5Q8WWZ7 1642 aa39.08■■■■□ 3.85
SFSWAP-204ENST00000535399 SNAPC4Q5SXM2 1469 aa39.05■■■■□ 3.84
SFSWAP-204ENST00000535399 OSCARQ8IYS5 282 aa39.04■■■■□ 3.84
SFSWAP-204ENST00000535399 MAGI1Q96QZ7 1491 aaPredicted RBP38.98■■■■□ 3.83
SFSWAP-204ENST00000535399 PBRM1Q86U86 1689 aa38.92■■■■□ 3.82
SFSWAP-204ENST00000535399 FBLN2P98095 1184 aa38.9■■■■□ 3.82
SFSWAP-204ENST00000535399 SYNJ2O15056 1496 aa38.83■■■■□ 3.81
SFSWAP-204ENST00000535399 CHD1O14646 1710 aa38.83■■■■□ 3.81
SFSWAP-204ENST00000535399 CHMP7Q8WUX9 453 aaPredicted RBP38.82■■■■□ 3.8
SFSWAP-204ENST00000535399 ERICH3Q5RHP9 1530 aa38.79■■■■□ 3.8
SFSWAP-204ENST00000535399 KIF27Q86VH2 1401 aa38.76■■■■□ 3.8
SFSWAP-204ENST00000535399 TRIM41Q8WV44 630 aa38.74■■■■□ 3.79
SFSWAP-204ENST00000535399 ADAMTS12P58397 1594 aa38.71■■■■□ 3.79
SFSWAP-204ENST00000535399 FHAD1B1AJZ9 1412 aa38.69■■■■□ 3.78
SFSWAP-204ENST00000535399 IGF1RP08069 1367 aa38.65■■■■□ 3.78
SFSWAP-204ENST00000535399 GRIN2AQ12879 1464 aa38.6■■■■□ 3.77
SFSWAP-204ENST00000535399 CLASP1Q7Z460 1538 aa38.52■■■■□ 3.76
SFSWAP-204ENST00000535399 RUSC2Q8N2Y8 1516 aa38.48■■■■□ 3.75
SFSWAP-204ENST00000535399 NUP160Q12769 1436 aa38.46■■■■□ 3.75
SFSWAP-204ENST00000535399 CUL7Q14999 1698 aa38.4■■■■□ 3.74
SFSWAP-204ENST00000535399 CARMIL1Q5VZK9 1371 aa38.4■■■■□ 3.74
SFSWAP-204ENST00000535399 CHIC1Q5VXU3 224 aa38.39■■■■□ 3.74
SFSWAP-204ENST00000535399 CEP170Q5SW79 1584 aa38.39■■■■□ 3.74
SFSWAP-204ENST00000535399 ARHGEF11O15085 1522 aa38.38■■■■□ 3.73
SFSWAP-204ENST00000535399 RIMBP3CA6NJZ7 1639 aa38.33■■■■□ 3.73
SFSWAP-204ENST00000535399 RIMBP3BA6NNM3 1639 aa38.33■■■■□ 3.73
SFSWAP-204ENST00000535399 RIMBP3Q9UFD9 1639 aa38.33■■■■□ 3.73
SFSWAP-204ENST00000535399 RAPGEF2Q9Y4G8 1499 aa38.15■■■■□ 3.7
SFSWAP-204ENST00000535399 ARAP1Q96P48 1450 aa38.11■■■■□ 3.69
SFSWAP-204ENST00000535399 KIAA0586Q9BVV6 1533 aa38.09■■■■□ 3.69
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms