RNA–Protein interactions for RNA: ENST00000532737.1

USP48-214, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 680 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-214ENST00000532737 ANKRD30BQ9BXX2 1392 aa36.49■■■■□ 3.43
USP48-214ENST00000532737 MYO5BQ9ULV0 1848 aa36.48■■■■□ 3.43
USP48-214ENST00000532737 SCAF11Q99590 1463 aaKnown RBP36.48■■■■□ 3.43
USP48-214ENST00000532737 RIMS2Q9UQ26 1411 aa36.46■■■■□ 3.43
USP48-214ENST00000532737 ZFYVE9O95405 1425 aa36.45■■■■□ 3.43
USP48-214ENST00000532737 DISP3Q9P2K9 1392 aa36.45■■■■□ 3.43
USP48-214ENST00000532737 MED14O60244 1454 aa36.44■■■■□ 3.42
USP48-214ENST00000532737 NPHP4O75161 1426 aaPredicted RBP36.43■■■■□ 3.42
USP48-214ENST00000532737 ZNF326Q5BKZ1 582 aaKnown RBP36.43■■■■□ 3.42
USP48-214ENST00000532737 HDGFP51858 240 aaKnown RBP36.4■■■■□ 3.42
USP48-214ENST00000532737 NUTM2DQ5VT03 806 aaPredicted RBP36.4■■■■□ 3.42
USP48-214ENST00000532737 KIF1BO60333 1816 aa36.38■■■■□ 3.42
USP48-214ENST00000532737 ABCF1Q8NE71 845 aaKnown RBP eCLIP36.38■■■■□ 3.41
USP48-214ENST00000532737 UBAP1LF5GYI3 381 aa36.37■■■■□ 3.41
USP48-214ENST00000532737 CPS1P31327 1500 aa36.36■■■■□ 3.41
USP48-214ENST00000532737 DHX57Q6P158 1386 aaKnown RBP36.36■■■■□ 3.41
USP48-214ENST00000532737 SPATA31E1Q6ZUB1 1445 aa36.35■■■■□ 3.41
USP48-214ENST00000532737 PPP1R15AO75807 674 aaPredicted RBP36.34■■■■□ 3.41
USP48-214ENST00000532737 ILDR2Q71H61 639 aa36.33■■■■□ 3.41
USP48-214ENST00000532737 RGL3Q3MIN7 710 aa36.32■■■■□ 3.4
USP48-214ENST00000532737 IQGAP1P46940 1657 aa36.32■■■■□ 3.4
USP48-214ENST00000532737 SENP3Q9H4L4 574 aaPredicted RBP36.31■■■■□ 3.4
USP48-214ENST00000532737 RPGRIP1LQ68CZ1 1315 aa36.29■■■■□ 3.4
USP48-214ENST00000532737 NEXMIFQ5QGS0 1516 aa36.29■■■■□ 3.4
USP48-214ENST00000532737 PLEKHG1Q9ULL1 1385 aa36.28■■■■□ 3.4
USP48-214ENST00000532737 BCANQ96GW7 911 aa36.26■■■■□ 3.4
USP48-214ENST00000532737 SLC26A8Q96RN1 970 aa36.24■■■■□ 3.39
USP48-214ENST00000532737 STRCP1A6NGW2 1772 aa36.23■■■■□ 3.39
USP48-214ENST00000532737 VGFO15240 615 aaPredicted RBP36.19■■■■□ 3.38
USP48-214ENST00000532737 SIN3AQ96ST3 1273 aa36.15■■■■□ 3.38
USP48-214ENST00000532737 ADAMTS13Q76LX8 1427 aa36.15■■■■□ 3.38
USP48-214ENST00000532737 TBX22Q9Y458 520 aa36.14■■■■□ 3.38
USP48-214ENST00000532737 ALKQ9UM73 1620 aa36.14■■■■□ 3.38
USP48-214ENST00000532737 PPLO60437 1756 aa36.13■■■■□ 3.37
USP48-214ENST00000532737 ADGRF5Q8IZF2 1346 aa36.11■■■■□ 3.37
USP48-214ENST00000532737 TOM1O60784 492 aa36.09■■■■□ 3.37
USP48-214ENST00000532737 SETBP1Q9Y6X0 1596 aa36.08■■■■□ 3.37
USP48-214ENST00000532737 SOCS7O14512 581 aa36.08■■■■□ 3.37
USP48-214ENST00000532737 NRXN3Q9Y4C0 1643 aa36.07■■■■□ 3.36
USP48-214ENST00000532737 IFT172Q9UG01 1749 aa36.06■■■■□ 3.36
USP48-214ENST00000532737 PIP4K2BP78356 416 aa36.06■■■■□ 3.36
USP48-214ENST00000532737 LRRC7Q96NW7 1537 aa36.05■■■■□ 3.36
USP48-214ENST00000532737 NEUROD1Q13562 356 aa36.05■■■■□ 3.36
USP48-214ENST00000532737 SCAF1Q9H7N4 1312 aaKnown RBP36.04■■■■□ 3.36
USP48-214ENST00000532737 HSPA1LP34931 641 aa36.03■■■■□ 3.36
USP48-214ENST00000532737 DCAF11Q8TEB1 546 aa36.03■■■■□ 3.36
USP48-214ENST00000532737 KCNA6P17658 529 aa36.02■■■■□ 3.36
USP48-214ENST00000532737 DIP2AQ14689 1571 aa36.02■■■■□ 3.36
USP48-214ENST00000532737 KDM2AQ9Y2K7 1162 aa36.01■■■■□ 3.36
USP48-214ENST00000532737 MYOM2P54296 1465 aa35.99■■■■□ 3.35
USP48-214ENST00000532737 XIRP1Q702N8 1843 aaKnown RBP35.97■■■■□ 3.35
USP48-214ENST00000532737 METP08581 1390 aa35.97■■■■□ 3.35
USP48-214ENST00000532737 PIK3R4Q99570 1358 aa35.96■■■■□ 3.35
USP48-214ENST00000532737 NRXN1Q9ULB1 1477 aa35.96■■■■□ 3.35
USP48-214ENST00000532737 MED1Q15648 1581 aaPredicted RBP35.95■■■■□ 3.35
USP48-214ENST00000532737 PIK3C2GO75747 1445 aa35.95■■■■□ 3.35
USP48-214ENST00000532737 STAC3Q96MF2 364 aa35.93■■■■□ 3.34
USP48-214ENST00000532737 PTPRUQ92729 1446 aa35.92■■■■□ 3.34
USP48-214ENST00000532737 L3MBTL2Q969R5 705 aa35.92■■■■□ 3.34
USP48-214ENST00000532737 NWD1Q149M9 1564 aa35.89■■■■□ 3.34
USP48-214ENST00000532737 C14orf93Q9H972 538 aaKnown RBP35.89■■■■□ 3.34
USP48-214ENST00000532737 AMOTL2Q9Y2J4 779 aa35.89■■■■□ 3.34
USP48-214ENST00000532737 CHD2O14647 1828 aaKnown RBP35.89■■■■□ 3.34
USP48-214ENST00000532737 SETD1AO15047 1707 aaKnown RBP35.87■■■■□ 3.33
USP48-214ENST00000532737 CFAP70Q5T0N1 1121 aa35.87■■■■□ 3.33
USP48-214ENST00000532737 PROSER2Q86WR7 435 aaPredicted RBP35.85■■■■□ 3.33
USP48-214ENST00000532737 CCER1Q8TC90 406 aaPredicted RBP35.83■■■■□ 3.33
USP48-214ENST00000532737 NKTRP30414 1462 aaKnown RBP35.83■■■■□ 3.33
USP48-214ENST00000532737 TMEM132EQ6IEE7 984 aa35.82■■■■□ 3.32
USP48-214ENST00000532737 RBM33Q96EV2 1170 aaKnown RBP35.81■■■■□ 3.32
USP48-214ENST00000532737 CLSPNQ9HAW4 1339 aa35.81■■■■□ 3.32
USP48-214ENST00000532737 TMEM94Q12767 1356 aa35.79■■■■□ 3.32
USP48-214ENST00000532737 ASXL1Q8IXJ9 1541 aa35.78■■■■□ 3.32
USP48-214ENST00000532737 XRN1Q8IZH2 1706 aaKnown RBP35.77■■■■□ 3.32
USP48-214ENST00000532737 TONSLQ96HA7 1378 aa35.76■■■■□ 3.31
USP48-214ENST00000532737 PRAG1Q86YV5 1406 aa35.74■■■■□ 3.31
USP48-214ENST00000532737 STK26Q9P289 416 aa35.73■■■■□ 3.31
USP48-214ENST00000532737 LRPPRCP42704 1394 aaKnown RBP35.72■■■■□ 3.31
USP48-214ENST00000532737 LAMC1P11047 1609 aa35.72■■■■□ 3.31
USP48-214ENST00000532737 ROBO2Q9HCK4 1378 aa35.69■■■■□ 3.3
USP48-214ENST00000532737 YTHDC2Q9H6S0 1430 aaKnown RBP35.68■■■■□ 3.3
USP48-214ENST00000532737 ABCC11Q96J66 1382 aa35.67■■■■□ 3.3
USP48-214ENST00000532737 ADGRB1O14514 1584 aa35.66■■■■□ 3.3
USP48-214ENST00000532737 PTCH1Q13635 1447 aa35.65■■■■□ 3.3
USP48-214ENST00000532737 NCOA3Q9Y6Q9 1424 aa35.64■■■■□ 3.3
USP48-214ENST00000532737 TECPR2O15040 1411 aa35.63■■■■□ 3.29
USP48-214ENST00000532737 NBPF1Q3BBV0 1214 aa35.62■■■■□ 3.29
USP48-214ENST00000532737 NBPF8Q3BBV2 869 aa35.62■■■■□ 3.29
USP48-214ENST00000532737 C14orf37Q86TY3 774 aa35.61■■■■□ 3.29
USP48-214ENST00000532737 WAPLQ7Z5K2 1190 aa35.58■■■■□ 3.29
USP48-214ENST00000532737 MSH6P52701 1360 aa35.57■■■■□ 3.28
USP48-214ENST00000532737 KIAA1210Q9ULL0 1709 aa35.57■■■■□ 3.28
USP48-214ENST00000532737 FAM135BQ49AJ0 1406 aa35.57■■■■□ 3.28
USP48-214ENST00000532737 SIRT1Q96EB6 747 aa35.56■■■■□ 3.28
USP48-214ENST00000532737 C19orf44Q9H6X5 657 aa35.55■■■■□ 3.28
USP48-214ENST00000532737 TRAK1Q9UPV9 953 aa35.55■■■■□ 3.28
USP48-214ENST00000532737 ROBO1Q9Y6N7 1651 aa35.54■■■■□ 3.28
USP48-214ENST00000532737 TIMELESSQ9UNS1 1208 aa35.54■■■■□ 3.28
USP48-214ENST00000532737 KNDC1Q76NI1 1749 aa35.54■■■■□ 3.28
USP48-214ENST00000532737 PLEKHH1Q9ULM0 1364 aa35.53■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 187.8 ms