RNA–Protein interactions for RNA: ENST00000519774.5

HPS4-218, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-218ENST00000519774 EID1Q9Y6B2 187 aa17.45■□□□□ 0.38
HPS4-218ENST00000519774 NPHP4O75161 1426 aaPredicted RBP17.45■□□□□ 0.38
HPS4-218ENST00000519774 RIMS2Q9UQ26 1411 aa17.45■□□□□ 0.38
HPS4-218ENST00000519774 IQGAP1P46940 1657 aa17.45■□□□□ 0.38
HPS4-218ENST00000519774 LTKP29376 864 aa17.44■□□□□ 0.38
HPS4-218ENST00000519774 ZNF326Q5BKZ1 582 aaKnown RBP17.43■□□□□ 0.38
HPS4-218ENST00000519774 MED14O60244 1454 aa17.43■□□□□ 0.38
HPS4-218ENST00000519774 ZFYVE9O95405 1425 aa17.42■□□□□ 0.38
HPS4-218ENST00000519774 PPP1R15AO75807 674 aaPredicted RBP17.42■□□□□ 0.38
HPS4-218ENST00000519774 NUTM2DQ5VT03 806 aaPredicted RBP17.4■□□□□ 0.38
HPS4-218ENST00000519774 PCGF6Q9BYE7 350 aa17.4■□□□□ 0.38
HPS4-218ENST00000519774 ANKRD30BQ9BXX2 1392 aa17.39■□□□□ 0.37
HPS4-218ENST00000519774 BCANQ96GW7 911 aa17.38■□□□□ 0.37
HPS4-218ENST00000519774 SCAF1Q9H7N4 1312 aaKnown RBP17.38■□□□□ 0.37
HPS4-218ENST00000519774 NEXMIFQ5QGS0 1516 aa17.37■□□□□ 0.37
HPS4-218ENST00000519774 HDGFP51858 240 aaKnown RBP17.37■□□□□ 0.37
HPS4-218ENST00000519774 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.37■□□□□ 0.37
HPS4-218ENST00000519774 PLEKHG1Q9ULL1 1385 aa17.35■□□□□ 0.37
HPS4-218ENST00000519774 SPATA31E1Q6ZUB1 1445 aa17.35■□□□□ 0.37
HPS4-218ENST00000519774 PPLO60437 1756 aa17.34■□□□□ 0.37
HPS4-218ENST00000519774 RGL3Q3MIN7 710 aa17.34■□□□□ 0.37
HPS4-218ENST00000519774 ZNF335Q9H4Z2 1342 aaPredicted RBP17.34■□□□□ 0.37
HPS4-218ENST00000519774 DHX57Q6P158 1386 aaKnown RBP17.33■□□□□ 0.36
HPS4-218ENST00000519774 SLC26A8Q96RN1 970 aa17.32■□□□□ 0.36
HPS4-218ENST00000519774 IFT172Q9UG01 1749 aa17.31■□□□□ 0.36
HPS4-218ENST00000519774 RPGRIP1LQ68CZ1 1315 aa17.3■□□□□ 0.36
HPS4-218ENST00000519774 LTBP4Q8N2S1 1624 aa17.3■□□□□ 0.36
HPS4-218ENST00000519774 NRXN3Q9Y4C0 1643 aa17.29■□□□□ 0.36
HPS4-218ENST00000519774 ADAMTS13Q76LX8 1427 aa17.28■□□□□ 0.36
HPS4-218ENST00000519774 STRCP1A6NGW2 1772 aa17.28■□□□□ 0.36
HPS4-218ENST00000519774 DIP2AQ14689 1571 aa17.28■□□□□ 0.36
HPS4-218ENST00000519774 SETBP1Q9Y6X0 1596 aa17.28■□□□□ 0.36
HPS4-218ENST00000519774 VGFO15240 615 aaPredicted RBP17.26■□□□□ 0.35
HPS4-218ENST00000519774 CPS1P31327 1500 aa17.25■□□□□ 0.35
HPS4-218ENST00000519774 ADGRF5Q8IZF2 1346 aa17.23■□□□□ 0.35
HPS4-218ENST00000519774 CERKQ8TCT0 537 aa17.23■□□□□ 0.35
HPS4-218ENST00000519774 TBX22Q9Y458 520 aa17.23■□□□□ 0.35
HPS4-218ENST00000519774 SIN3AQ96ST3 1273 aa17.22■□□□□ 0.35
HPS4-218ENST00000519774 MYOM2P54296 1465 aa17.22■□□□□ 0.35
HPS4-218ENST00000519774 NWD1Q149M9 1564 aa17.22■□□□□ 0.35
HPS4-218ENST00000519774 CHD2O14647 1828 aaKnown RBP17.21■□□□□ 0.35
HPS4-218ENST00000519774 MAPK8IP2Q13387 824 aaPredicted RBP17.21■□□□□ 0.35
HPS4-218ENST00000519774 SETD1AO15047 1707 aaKnown RBP17.21■□□□□ 0.35
HPS4-218ENST00000519774 NEUROD1Q13562 356 aa17.2■□□□□ 0.34
HPS4-218ENST00000519774 ALKQ9UM73 1620 aa17.2■□□□□ 0.34
HPS4-218ENST00000519774 KCNA6P17658 529 aa17.19■□□□□ 0.34
HPS4-218ENST00000519774 DCAF11Q8TEB1 546 aa17.19■□□□□ 0.34
HPS4-218ENST00000519774 KDM2AQ9Y2K7 1162 aa17.19■□□□□ 0.34
HPS4-218ENST00000519774 METP08581 1390 aa17.18■□□□□ 0.34
HPS4-218ENST00000519774 LRRC7Q96NW7 1537 aa17.18■□□□□ 0.34
HPS4-218ENST00000519774 PIK3C2GO75747 1445 aa17.18■□□□□ 0.34
HPS4-218ENST00000519774 NKTRP30414 1462 aaKnown RBP17.18■□□□□ 0.34
HPS4-218ENST00000519774 NRXN1Q9ULB1 1477 aa17.18■□□□□ 0.34
HPS4-218ENST00000519774 PIK3R4Q99570 1358 aa17.17■□□□□ 0.34
HPS4-218ENST00000519774 PTPRUQ92729 1446 aa17.17■□□□□ 0.34
HPS4-218ENST00000519774 XRN1Q8IZH2 1706 aaKnown RBP17.16■□□□□ 0.34
HPS4-218ENST00000519774 LAMC1P11047 1609 aa17.15■□□□□ 0.34
HPS4-218ENST00000519774 IQSEC2Q5JU85 1478 aa17.15■□□□□ 0.34
HPS4-218ENST00000519774 XIRP1Q702N8 1843 aaKnown RBP17.14■□□□□ 0.34
HPS4-218ENST00000519774 KCNA4P22459 653 aa17.14■□□□□ 0.33
HPS4-218ENST00000519774 PROSER2Q86WR7 435 aaPredicted RBP17.14■□□□□ 0.33
HPS4-218ENST00000519774 AMOTL2Q9Y2J4 779 aa17.14■□□□□ 0.33
HPS4-218ENST00000519774 ASXL1Q8IXJ9 1541 aa17.13■□□□□ 0.33
HPS4-218ENST00000519774 TMEM94Q12767 1356 aa17.13■□□□□ 0.33
HPS4-218ENST00000519774 RBM33Q96EV2 1170 aaKnown RBP17.12■□□□□ 0.33
HPS4-218ENST00000519774 CFAP70Q5T0N1 1121 aa17.11■□□□□ 0.33
HPS4-218ENST00000519774 L3MBTL2Q969R5 705 aa17.11■□□□□ 0.33
HPS4-218ENST00000519774 TONSLQ96HA7 1378 aa17.1■□□□□ 0.33
HPS4-218ENST00000519774 NCBP3Q53F19 620 aaKnown RBP17.09■□□□□ 0.33
HPS4-218ENST00000519774 TMEM132EQ6IEE7 984 aa17.09■□□□□ 0.33
HPS4-218ENST00000519774 STAC3Q96MF2 364 aa17.09■□□□□ 0.33
HPS4-218ENST00000519774 C14orf93Q9H972 538 aaKnown RBP17.09■□□□□ 0.33
HPS4-218ENST00000519774 C14orf37Q86TY3 774 aa17.08■□□□□ 0.32
HPS4-218ENST00000519774 CCER1Q8TC90 406 aaPredicted RBP17.08■□□□□ 0.32
HPS4-218ENST00000519774 PRAG1Q86YV5 1406 aa17.07■□□□□ 0.32
HPS4-218ENST00000519774 UBAP1LF5GYI3 381 aa17.07■□□□□ 0.32
HPS4-218ENST00000519774 STK26Q9P289 416 aa17.07■□□□□ 0.32
HPS4-218ENST00000519774 KNDC1Q76NI1 1749 aa17.07■□□□□ 0.32
HPS4-218ENST00000519774 PTCH1Q13635 1447 aa17.06■□□□□ 0.32
HPS4-218ENST00000519774 LRPPRCP42704 1394 aaKnown RBP17.06■□□□□ 0.32
HPS4-218ENST00000519774 FBXO41Q8TF61 875 aa17.06■□□□□ 0.32
HPS4-218ENST00000519774 YTHDC2Q9H6S0 1430 aaKnown RBP17.05■□□□□ 0.32
HPS4-218ENST00000519774 ADGRB1O14514 1584 aa17.05■□□□□ 0.32
HPS4-218ENST00000519774 MSH6P52701 1360 aa17.04■□□□□ 0.32
HPS4-218ENST00000519774 ROBO2Q9HCK4 1378 aa17.04■□□□□ 0.32
HPS4-218ENST00000519774 CNKSR2Q8WXI2 1034 aa17.04■□□□□ 0.32
HPS4-218ENST00000519774 KIAA1210Q9ULL0 1709 aa17.04■□□□□ 0.32
HPS4-218ENST00000519774 CLSPNQ9HAW4 1339 aa17.03■□□□□ 0.32
HPS4-218ENST00000519774 TECPR2O15040 1411 aa17.03■□□□□ 0.32
HPS4-218ENST00000519774 NALCNQ8IZF0 1738 aa17.02■□□□□ 0.32
HPS4-218ENST00000519774 NCOA3Q9Y6Q9 1424 aa17.02■□□□□ 0.31
HPS4-218ENST00000519774 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.01■□□□□ 0.31
HPS4-218ENST00000519774 TOM1O60784 492 aa17.01■□□□□ 0.31
HPS4-218ENST00000519774 ABCC11Q96J66 1382 aa17.01■□□□□ 0.31
HPS4-218ENST00000519774 TRPM1Q7Z4N2 1603 aa17■□□□□ 0.31
HPS4-218ENST00000519774 PIP4K2BP78356 416 aa17■□□□□ 0.31
HPS4-218ENST00000519774 ADGRL3Q9HAR2 1447 aa17■□□□□ 0.31
HPS4-218ENST00000519774 ILDR1Q86SU0 546 aaPredicted RBP16.99■□□□□ 0.31
HPS4-218ENST00000519774 WAPLQ7Z5K2 1190 aa16.98■□□□□ 0.31
HPS4-218ENST00000519774 PLEKHH1Q9ULM0 1364 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms