RNA–Protein interactions for RNA: ENST00000518538.5

VEGFA-217, Transcript of vascular endothelial growth factor A, humanhuman

TSL 2

Gene VEGFA, Length 535 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-217ENST00000518538 KIF1BO60333 1816 aa32.47■■■□□ 2.79
VEGFA-217ENST00000518538 CCDC144AA2RUR9 1427 aa32.47■■■□□ 2.79
VEGFA-217ENST00000518538 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.47■■■□□ 2.79
VEGFA-217ENST00000518538 ZNF335Q9H4Z2 1342 aaPredicted RBP32.46■■■□□ 2.79
VEGFA-217ENST00000518538 LTBP4Q8N2S1 1624 aa32.44■■■□□ 2.78
VEGFA-217ENST00000518538 PPP1R15AO75807 674 aaPredicted RBP32.43■■■□□ 2.78
VEGFA-217ENST00000518538 ZNF326Q5BKZ1 582 aaKnown RBP32.43■■■□□ 2.78
VEGFA-217ENST00000518538 PLEKHG1Q9ULL1 1385 aa32.43■■■□□ 2.78
VEGFA-217ENST00000518538 CERKQ8TCT0 537 aa32.38■■■□□ 2.77
VEGFA-217ENST00000518538 NUTM2DQ5VT03 806 aaPredicted RBP32.37■■■□□ 2.77
VEGFA-217ENST00000518538 NEXMIFQ5QGS0 1516 aa32.36■■■□□ 2.77
VEGFA-217ENST00000518538 ANKRD30BQ9BXX2 1392 aa32.35■■■□□ 2.77
VEGFA-217ENST00000518538 BCANQ96GW7 911 aa32.34■■■□□ 2.77
VEGFA-217ENST00000518538 SPATA31E1Q6ZUB1 1445 aa32.33■■■□□ 2.77
VEGFA-217ENST00000518538 RPGRIP1LQ68CZ1 1315 aa32.32■■■□□ 2.76
VEGFA-217ENST00000518538 SLC26A8Q96RN1 970 aa32.32■■■□□ 2.76
VEGFA-217ENST00000518538 CPS1P31327 1500 aa32.31■■■□□ 2.76
VEGFA-217ENST00000518538 SENP3Q9H4L4 574 aaPredicted RBP32.28■■■□□ 2.76
VEGFA-217ENST00000518538 ADAMTS13Q76LX8 1427 aa32.27■■■□□ 2.76
VEGFA-217ENST00000518538 DIP2AQ14689 1571 aa32.27■■■□□ 2.76
VEGFA-217ENST00000518538 IQSEC2Q5JU85 1478 aa32.26■■■□□ 2.75
VEGFA-217ENST00000518538 SETBP1Q9Y6X0 1596 aa32.25■■■□□ 2.75
VEGFA-217ENST00000518538 TBX22Q9Y458 520 aa32.25■■■□□ 2.75
VEGFA-217ENST00000518538 STRCP1A6NGW2 1772 aa32.24■■■□□ 2.75
VEGFA-217ENST00000518538 VGFO15240 615 aaPredicted RBP32.24■■■□□ 2.75
VEGFA-217ENST00000518538 RGL3Q3MIN7 710 aa32.24■■■□□ 2.75
VEGFA-217ENST00000518538 PPLO60437 1756 aa32.24■■■□□ 2.75
VEGFA-217ENST00000518538 NRXN3Q9Y4C0 1643 aa32.22■■■□□ 2.75
VEGFA-217ENST00000518538 KCNA6P17658 529 aa32.19■■■□□ 2.74
VEGFA-217ENST00000518538 NWD1Q149M9 1564 aa32.18■■■□□ 2.74
VEGFA-217ENST00000518538 PIK3R4Q99570 1358 aa32.17■■■□□ 2.74
VEGFA-217ENST00000518538 IFT172Q9UG01 1749 aa32.17■■■□□ 2.74
VEGFA-217ENST00000518538 FBXO41Q8TF61 875 aa32.15■■■□□ 2.74
VEGFA-217ENST00000518538 LRRC7Q96NW7 1537 aa32.15■■■□□ 2.74
VEGFA-217ENST00000518538 CHD2O14647 1828 aaKnown RBP32.12■■■□□ 2.73
VEGFA-217ENST00000518538 NKTRP30414 1462 aaKnown RBP32.12■■■□□ 2.73
VEGFA-217ENST00000518538 DHX57Q6P158 1386 aaKnown RBP32.11■■■□□ 2.73
VEGFA-217ENST00000518538 ADGRF5Q8IZF2 1346 aa32.1■■■□□ 2.73
VEGFA-217ENST00000518538 MYOM2P54296 1465 aa32.07■■■□□ 2.72
VEGFA-217ENST00000518538 METP08581 1390 aa32.07■■■□□ 2.72
VEGFA-217ENST00000518538 ALKQ9UM73 1620 aa32.06■■■□□ 2.72
VEGFA-217ENST00000518538 PTPRUQ92729 1446 aa32.05■■■□□ 2.72
VEGFA-217ENST00000518538 SETD1AO15047 1707 aaKnown RBP32.04■■■□□ 2.72
VEGFA-217ENST00000518538 PIK3C2GO75747 1445 aa32.03■■■□□ 2.72
VEGFA-217ENST00000518538 ILDR1Q86SU0 546 aaPredicted RBP32.03■■■□□ 2.72
VEGFA-217ENST00000518538 PROSER2Q86WR7 435 aaPredicted RBP32.03■■■□□ 2.72
VEGFA-217ENST00000518538 PCGF6Q9BYE7 350 aa32.03■■■□□ 2.72
VEGFA-217ENST00000518538 NRXN1Q9ULB1 1477 aa32.03■■■□□ 2.72
VEGFA-217ENST00000518538 AMOTL2Q9Y2J4 779 aa32.01■■■□□ 2.71
VEGFA-217ENST00000518538 TMEM94Q12767 1356 aa32.01■■■□□ 2.71
VEGFA-217ENST00000518538 XRN1Q8IZH2 1706 aaKnown RBP32■■■□□ 2.71
VEGFA-217ENST00000518538 XIRP1Q702N8 1843 aaKnown RBP31.99■■■□□ 2.71
VEGFA-217ENST00000518538 STAC3Q96MF2 364 aa31.97■■■□□ 2.71
VEGFA-217ENST00000518538 UBAP1LF5GYI3 381 aa31.96■■■□□ 2.71
VEGFA-217ENST00000518538 DCAF11Q8TEB1 546 aa31.96■■■□□ 2.71
VEGFA-217ENST00000518538 NCOA3Q9Y6Q9 1424 aa31.93■■■□□ 2.7
VEGFA-217ENST00000518538 RBM33Q96EV2 1170 aaKnown RBP31.93■■■□□ 2.7
VEGFA-217ENST00000518538 TOM1O60784 492 aa31.92■■■□□ 2.7
VEGFA-217ENST00000518538 KDM2AQ9Y2K7 1162 aa31.92■■■□□ 2.7
VEGFA-217ENST00000518538 SIN3AQ96ST3 1273 aa31.91■■■□□ 2.7
VEGFA-217ENST00000518538 C14orf93Q9H972 538 aaKnown RBP31.91■■■□□ 2.7
VEGFA-217ENST00000518538 LAMC1P11047 1609 aa31.9■■■□□ 2.7
VEGFA-217ENST00000518538 PRAG1Q86YV5 1406 aa31.9■■■□□ 2.7
VEGFA-217ENST00000518538 ASXL1Q8IXJ9 1541 aa31.87■■■□□ 2.69
VEGFA-217ENST00000518538 PTCH1Q13635 1447 aa31.87■■■□□ 2.69
VEGFA-217ENST00000518538 MSH6P52701 1360 aa31.86■■■□□ 2.69
VEGFA-217ENST00000518538 CFAP70Q5T0N1 1121 aa31.85■■■□□ 2.69
VEGFA-217ENST00000518538 NEUROD1Q13562 356 aa31.84■■■□□ 2.69
VEGFA-217ENST00000518538 LRPPRCP42704 1394 aaKnown RBP31.82■■■□□ 2.69
VEGFA-217ENST00000518538 TMEM132EQ6IEE7 984 aa31.82■■■□□ 2.68
VEGFA-217ENST00000518538 C14orf37Q86TY3 774 aa31.81■■■□□ 2.68
VEGFA-217ENST00000518538 ROBO2Q9HCK4 1378 aa31.81■■■□□ 2.68
VEGFA-217ENST00000518538 TECPR2O15040 1411 aa31.8■■■□□ 2.68
VEGFA-217ENST00000518538 YTHDC2Q9H6S0 1430 aaKnown RBP31.79■■■□□ 2.68
VEGFA-217ENST00000518538 ABCC11Q96J66 1382 aa31.79■■■□□ 2.68
VEGFA-217ENST00000518538 PIP4K2BP78356 416 aa31.78■■■□□ 2.68
VEGFA-217ENST00000518538 L3MBTL2Q969R5 705 aa31.78■■■□□ 2.68
VEGFA-217ENST00000518538 C19orf44Q9H6X5 657 aa31.78■■■□□ 2.68
VEGFA-217ENST00000518538 KNDC1Q76NI1 1749 aa31.77■■■□□ 2.68
VEGFA-217ENST00000518538 STK26Q9P289 416 aa31.76■■■□□ 2.67
VEGFA-217ENST00000518538 SCAF1Q9H7N4 1312 aaKnown RBP31.75■■■□□ 2.67
VEGFA-217ENST00000518538 ADGRB1O14514 1584 aa31.75■■■□□ 2.67
VEGFA-217ENST00000518538 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.75■■■□□ 2.67
VEGFA-217ENST00000518538 ADGRL3Q9HAR2 1447 aa31.74■■■□□ 2.67
VEGFA-217ENST00000518538 DCCP43146 1447 aa31.73■■■□□ 2.67
VEGFA-217ENST00000518538 NALCNQ8IZF0 1738 aa31.7■■■□□ 2.67
VEGFA-217ENST00000518538 CADPS2Q86UW7 1296 aa31.7■■■□□ 2.67
VEGFA-217ENST00000518538 ATF3P18847 181 aa31.69■■■□□ 2.66
VEGFA-217ENST00000518538 KIAA1210Q9ULL0 1709 aa31.69■■■□□ 2.66
VEGFA-217ENST00000518538 SIRT1Q96EB6 747 aa31.68■■■□□ 2.66
VEGFA-217ENST00000518538 FAM135BQ49AJ0 1406 aa31.67■■■□□ 2.66
VEGFA-217ENST00000518538 SLAIN2Q9P270 581 aa31.66■■■□□ 2.66
VEGFA-217ENST00000518538 TONSLQ96HA7 1378 aa31.66■■■□□ 2.66
VEGFA-217ENST00000518538 DLC1Q96QB1 1528 aa31.65■■■□□ 2.66
VEGFA-217ENST00000518538 WAPLQ7Z5K2 1190 aa31.64■■■□□ 2.66
VEGFA-217ENST00000518538 CLSPNQ9HAW4 1339 aa31.64■■■□□ 2.66
VEGFA-217ENST00000518538 PLEKHH1Q9ULM0 1364 aa31.63■■■□□ 2.65
VEGFA-217ENST00000518538 ROBO1Q9Y6N7 1651 aa31.59■■■□□ 2.65
VEGFA-217ENST00000518538 TRAK1Q9UPV9 953 aa31.58■■■□□ 2.65
VEGFA-217ENST00000518538 MST1RQ04912 1400 aa31.58■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 464.6 ms