RNA–Protein interactions for RNA: ENST00000518538.5

VEGFA-217, Transcript of vascular endothelial growth factor A, humanhuman

TSL 2

Gene VEGFA, Length 535 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-217ENST00000518538 NISCHQ9Y2I1 1504 aa53.27■■■■■ 6.12
VEGFA-217ENST00000518538 CCDC180Q9P1Z9 1646 aa47.32■■■■■ 5.17
VEGFA-217ENST00000518538 ABCC9O60706 1549 aa46.16■■■■■ 4.98
VEGFA-217ENST00000518538 RB1CC1Q8TDY2 1594 aa44.48■■■■■ 4.71
VEGFA-217ENST00000518538 NACADO15069 1562 aa44.47■■■■■ 4.71
VEGFA-217ENST00000518538 ZCCHC6Q5VYS8 1495 aaKnown RBP44.41■■■■■ 4.7
VEGFA-217ENST00000518538 DCAF8L2P0C7V8 631 aa44.4■■■■■ 4.7
VEGFA-217ENST00000518538 MYO15BQ96JP2 1530 aa44.26■■■■■ 4.68
VEGFA-217ENST00000518538 DCAF1Q9Y4B6 1507 aa44.1■■■■■ 4.65
VEGFA-217ENST00000518538 UNC13AQ9UPW8 1703 aa43.43■■■■■ 4.54
VEGFA-217ENST00000518538 SCRIBQ14160 1630 aa43.15■■■■■ 4.5
VEGFA-217ENST00000518538 PABPN1Q86U42 306 aaKnown RBP eCLIP43.14■■■■■ 4.5
VEGFA-217ENST00000518538 BICRAQ9NZM4 1560 aa43.12■■■■■ 4.49
VEGFA-217ENST00000518538 SHROOM4Q9ULL8 1493 aa42.73■■■■■ 4.43
VEGFA-217ENST00000518538 DNAJC5BQ9UF47 199 aa42.24■■■■■ 4.35
VEGFA-217ENST00000518538 EIF4G1Q04637 1599 aaKnown RBP41.97■■■■■ 4.31
VEGFA-217ENST00000518538 CC2D2AQ9P2K1 1620 aa41.77■■■■■ 4.28
VEGFA-217ENST00000518538 CECR2Q9BXF3 1484 aa41.47■■■■■ 4.23
VEGFA-217ENST00000518538 SMARCA4P51532 1647 aa41.31■■■■■ 4.2
VEGFA-217ENST00000518538 BAZ1AQ9NRL2 1556 aaPredicted RBP41.29■■■■■ 4.2
VEGFA-217ENST00000518538 ATAD2BQ9ULI0 1458 aa41.06■■■■■ 4.16
VEGFA-217ENST00000518538 MROH2BQ7Z745 1585 aa41.05■■■■■ 4.16
VEGFA-217ENST00000518538 SMARCA2P51531 1590 aa41.03■■■■■ 4.16
VEGFA-217ENST00000518538 NCAPD3P42695 1498 aa41.02■■■■■ 4.16
VEGFA-217ENST00000518538 PEG3Q9GZU2 1588 aa40.92■■■■■ 4.14
VEGFA-217ENST00000518538 HMGXB3Q12766 1538 aa40.84■■■■■ 4.13
VEGFA-217ENST00000518538 BAZ1BQ9UIG0 1483 aaKnown RBP40.73■■■■■ 4.11
VEGFA-217ENST00000518538 RSF1Q96T23 1441 aaPredicted RBP40.62■■■■■ 4.09
VEGFA-217ENST00000518538 WIZO95785 1651 aa40.59■■■■■ 4.09
VEGFA-217ENST00000518538 TOP2AP11388 1531 aaKnown RBP40.21■■■■■ 4.03
VEGFA-217ENST00000518538 NESP48681 1621 aa39.98■■■■□ 3.99
VEGFA-217ENST00000518538 LAMC3Q9Y6N6 1575 aa39.93■■■■□ 3.98
VEGFA-217ENST00000518538 CADPSQ9ULU8 1353 aa39.83■■■■□ 3.97
VEGFA-217ENST00000518538 ERCC6Q03468 1493 aa39.79■■■■□ 3.96
VEGFA-217ENST00000518538 CCDC88BA6NC98 1476 aa39.71■■■■□ 3.95
VEGFA-217ENST00000518538 PDS5BQ9NTI5 1447 aa39.65■■■■□ 3.94
VEGFA-217ENST00000518538 SUPT5HO00267 1087 aaKnown RBP39.64■■■■□ 3.94
VEGFA-217ENST00000518538 CFTRP13569 1480 aa39.62■■■■□ 3.93
VEGFA-217ENST00000518538 KIF21AQ7Z4S6 1674 aa39.5■■■■□ 3.91
VEGFA-217ENST00000518538 FANCD2Q9BXW9 1451 aa39.37■■■■□ 3.89
VEGFA-217ENST00000518538 THOC2Q8NI27 1593 aaKnown RBP39.37■■■■□ 3.89
VEGFA-217ENST00000518538 CUX2O14529 1486 aa39.36■■■■□ 3.89
VEGFA-217ENST00000518538 CEP164Q9UPV0 1460 aa39.32■■■■□ 3.89
VEGFA-217ENST00000518538 PRDM2Q13029 1718 aa39.31■■■■□ 3.88
VEGFA-217ENST00000518538 MRC2Q9UBG0 1479 aa39.24■■■■□ 3.87
VEGFA-217ENST00000518538 WDR62O43379 1518 aa39.11■■■■□ 3.85
VEGFA-217ENST00000518538 URB2Q14146 1524 aaKnown RBP38.97■■■■□ 3.83
VEGFA-217ENST00000518538 ABCC8Q09428 1581 aa38.78■■■■□ 3.8
VEGFA-217ENST00000518538 TOPBP1Q92547 1522 aa38.76■■■■□ 3.8
VEGFA-217ENST00000518538 DNMBPQ6XZF7 1577 aa38.73■■■■□ 3.79
VEGFA-217ENST00000518538 CUX1P39880 1505 aa38.51■■■■□ 3.76
VEGFA-217ENST00000518538 IFT140Q96RY7 1462 aa38.49■■■■□ 3.75
VEGFA-217ENST00000518538 POLA1P09884 1462 aaPredicted RBP38.43■■■■□ 3.74
VEGFA-217ENST00000518538 FGD5Q6ZNL6 1462 aa38.35■■■■□ 3.73
VEGFA-217ENST00000518538 TARBP1Q13395 1621 aaKnown RBP38.32■■■■□ 3.73
VEGFA-217ENST00000518538 WRNQ14191 1432 aaPredicted RBP eCLIP38.3■■■■□ 3.722e-6■■■■■ 35.2
VEGFA-217ENST00000518538 ZNF608Q9ULD9 1512 aaPredicted RBP38.28■■■■□ 3.72
VEGFA-217ENST00000518538 SOGA1O94964 1423 aa38.28■■■■□ 3.72
VEGFA-217ENST00000518538 RAD54L2Q9Y4B4 1467 aa38.25■■■■□ 3.71
VEGFA-217ENST00000518538 TOP2BQ02880 1626 aa38.21■■■■□ 3.71
VEGFA-217ENST00000518538 BIVM-ERCC5R4GMW8 1640 aa38.2■■■■□ 3.71
VEGFA-217ENST00000518538 SYNJ1O43426 1573 aa38.19■■■■□ 3.7
VEGFA-217ENST00000518538 EIF4G3O43432 1585 aaKnown RBP38.15■■■■□ 3.7
VEGFA-217ENST00000518538 AQRO60306 1485 aaKnown RBP eCLIP38.09■■■■□ 3.692e-9■■■■■ 30
VEGFA-217ENST00000518538 WDR97A6NE52 1622 aa38.06■■■■□ 3.68
VEGFA-217ENST00000518538 TDRD9Q8NDG6 1382 aaKnown RBP38.03■■■■□ 3.68
VEGFA-217ENST00000518538 ABCA10Q8WWZ4 1543 aa38.01■■■■□ 3.67
VEGFA-217ENST00000518538 DNAJC5Q9H3Z4 198 aa37.97■■■■□ 3.67
VEGFA-217ENST00000518538 GAPVD1Q14C86 1478 aa37.84■■■■□ 3.65
VEGFA-217ENST00000518538 ABCA5Q8WWZ7 1642 aa37.84■■■■□ 3.65
VEGFA-217ENST00000518538 GRIN2BQ13224 1484 aa37.83■■■■□ 3.65
VEGFA-217ENST00000518538 SNAPC4Q5SXM2 1469 aa37.76■■■■□ 3.63
VEGFA-217ENST00000518538 PBRM1Q86U86 1689 aa37.74■■■■□ 3.63
VEGFA-217ENST00000518538 MAGI1Q96QZ7 1491 aaPredicted RBP37.72■■■■□ 3.63
VEGFA-217ENST00000518538 OSCARQ8IYS5 282 aa37.71■■■■□ 3.63
VEGFA-217ENST00000518538 CHD1O14646 1710 aa37.63■■■■□ 3.61
VEGFA-217ENST00000518538 FBLN2P98095 1184 aa37.58■■■■□ 3.61
VEGFA-217ENST00000518538 SYNJ2O15056 1496 aa37.57■■■■□ 3.6
VEGFA-217ENST00000518538 ERICH3Q5RHP9 1530 aa37.56■■■■□ 3.6
VEGFA-217ENST00000518538 CHMP7Q8WUX9 453 aaPredicted RBP37.52■■■■□ 3.6
VEGFA-217ENST00000518538 KIF27Q86VH2 1401 aa37.5■■■■□ 3.59
VEGFA-217ENST00000518538 ADAMTS12P58397 1594 aa37.47■■■■□ 3.59
VEGFA-217ENST00000518538 TRIM41Q8WV44 630 aa37.45■■■■□ 3.59
VEGFA-217ENST00000518538 FHAD1B1AJZ9 1412 aa37.42■■■■□ 3.58
VEGFA-217ENST00000518538 GRIN2AQ12879 1464 aa37.34■■■■□ 3.57
VEGFA-217ENST00000518538 IGF1RP08069 1367 aa37.32■■■■□ 3.57
VEGFA-217ENST00000518538 CLASP1Q7Z460 1538 aa37.26■■■■□ 3.55
VEGFA-217ENST00000518538 CUL7Q14999 1698 aa37.23■■■■□ 3.55
VEGFA-217ENST00000518538 NUP160Q12769 1436 aa37.18■■■■□ 3.54
VEGFA-217ENST00000518538 RUSC2Q8N2Y8 1516 aa37.16■■■■□ 3.54
VEGFA-217ENST00000518538 CEP170Q5SW79 1584 aa37.14■■■■□ 3.54
VEGFA-217ENST00000518538 ARHGEF11O15085 1522 aa37.11■■■■□ 3.53
VEGFA-217ENST00000518538 CARMIL1Q5VZK9 1371 aa37.11■■■■□ 3.53
VEGFA-217ENST00000518538 RIMBP3CA6NJZ7 1639 aa37.1■■■■□ 3.53
VEGFA-217ENST00000518538 RIMBP3BA6NNM3 1639 aa37.1■■■■□ 3.53
VEGFA-217ENST00000518538 RIMBP3Q9UFD9 1639 aa37.1■■■■□ 3.53
VEGFA-217ENST00000518538 CHIC1Q5VXU3 224 aa37.07■■■■□ 3.52
VEGFA-217ENST00000518538 RAPGEF2Q9Y4G8 1499 aa36.91■■■■□ 3.5
VEGFA-217ENST00000518538 SHROOM2Q13796 1616 aa36.88■■■■□ 3.49
VEGFA-217ENST00000518538 EEA1Q15075 1411 aa36.87■■■■□ 3.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms