RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 KIF1BO60333 1816 aa20.91■□□□□ 0.94
NUP54-216ENST00000514901 PPP1R15AO75807 674 aaPredicted RBP20.91■□□□□ 0.94
NUP54-216ENST00000514901 ZFYVE9O95405 1425 aa20.91■□□□□ 0.94
NUP54-216ENST00000514901 MYO5BQ9ULV0 1848 aa20.91■□□□□ 0.94
NUP54-216ENST00000514901 NEURL4Q96JN8 1562 aa20.9■□□□□ 0.94
NUP54-216ENST00000514901 RPGRIP1LQ68CZ1 1315 aa20.9■□□□□ 0.94
NUP54-216ENST00000514901 PCGF6Q9BYE7 350 aa20.87■□□□□ 0.93
NUP54-216ENST00000514901 BCANQ96GW7 911 aa20.86■□□□□ 0.93
NUP54-216ENST00000514901 IQGAP1P46940 1657 aa20.86■□□□□ 0.93
NUP54-216ENST00000514901 PLEKHG1Q9ULL1 1385 aa20.85■□□□□ 0.93
NUP54-216ENST00000514901 VGFO15240 615 aaPredicted RBP20.85■□□□□ 0.93
NUP54-216ENST00000514901 NUTM2DQ5VT03 806 aaPredicted RBP20.83■□□□□ 0.93
NUP54-216ENST00000514901 SPATA31E1Q6ZUB1 1445 aa20.83■□□□□ 0.93
NUP54-216ENST00000514901 RGL3Q3MIN7 710 aa20.82■□□□□ 0.92
NUP54-216ENST00000514901 TBX22Q9Y458 520 aa20.8■□□□□ 0.92
NUP54-216ENST00000514901 NEXMIFQ5QGS0 1516 aa20.79■□□□□ 0.92
NUP54-216ENST00000514901 SLC26A8Q96RN1 970 aa20.79■□□□□ 0.92
NUP54-216ENST00000514901 ZNF335Q9H4Z2 1342 aaPredicted RBP20.78■□□□□ 0.92
NUP54-216ENST00000514901 DHX57Q6P158 1386 aaKnown RBP20.78■□□□□ 0.92
NUP54-216ENST00000514901 STAC3Q96MF2 364 aa20.76■□□□□ 0.91
NUP54-216ENST00000514901 CERKQ8TCT0 537 aa20.74■□□□□ 0.91
NUP54-216ENST00000514901 KCNA6P17658 529 aa20.73■□□□□ 0.91
NUP54-216ENST00000514901 LTBP4Q8N2S1 1624 aa20.73■□□□□ 0.91
NUP54-216ENST00000514901 PPLO60437 1756 aa20.72■□□□□ 0.91
NUP54-216ENST00000514901 ADAMTS13Q76LX8 1427 aa20.72■□□□□ 0.91
NUP54-216ENST00000514901 SENP3Q9H4L4 574 aaPredicted RBP20.72■□□□□ 0.91
NUP54-216ENST00000514901 DIP2AQ14689 1571 aa20.72■□□□□ 0.91
NUP54-216ENST00000514901 SETBP1Q9Y6X0 1596 aa20.72■□□□□ 0.91
NUP54-216ENST00000514901 PIK3R4Q99570 1358 aa20.72■□□□□ 0.91
NUP54-216ENST00000514901 CPS1P31327 1500 aa20.71■□□□□ 0.91
NUP54-216ENST00000514901 ADGRF5Q8IZF2 1346 aa20.69■□□□□ 0.9
NUP54-216ENST00000514901 DCAF11Q8TEB1 546 aa20.67■□□□□ 0.9
NUP54-216ENST00000514901 SIN3AQ96ST3 1273 aa20.66■□□□□ 0.9
NUP54-216ENST00000514901 IFT172Q9UG01 1749 aa20.65■□□□□ 0.9
NUP54-216ENST00000514901 MYOM2P54296 1465 aa20.65■□□□□ 0.9
NUP54-216ENST00000514901 IQSEC2Q5JU85 1478 aa20.65■□□□□ 0.9
NUP54-216ENST00000514901 NRXN3Q9Y4C0 1643 aa20.64■□□□□ 0.9
NUP54-216ENST00000514901 NEUROD1Q13562 356 aa20.64■□□□□ 0.89
NUP54-216ENST00000514901 KDM2AQ9Y2K7 1162 aa20.64■□□□□ 0.89
NUP54-216ENST00000514901 AMOTL2Q9Y2J4 779 aa20.63■□□□□ 0.89
NUP54-216ENST00000514901 PIK3C2GO75747 1445 aa20.62■□□□□ 0.89
NUP54-216ENST00000514901 CHD2O14647 1828 aaKnown RBP20.62■□□□□ 0.89
NUP54-216ENST00000514901 PROSER2Q86WR7 435 aaPredicted RBP20.62■□□□□ 0.89
NUP54-216ENST00000514901 NRXN1Q9ULB1 1477 aa20.62■□□□□ 0.89
NUP54-216ENST00000514901 METP08581 1390 aa20.61■□□□□ 0.89
NUP54-216ENST00000514901 ALKQ9UM73 1620 aa20.61■□□□□ 0.89
NUP54-216ENST00000514901 C14orf93Q9H972 538 aaKnown RBP20.61■□□□□ 0.89
NUP54-216ENST00000514901 STRCP1A6NGW2 1772 aa20.61■□□□□ 0.89
NUP54-216ENST00000514901 NKTRP30414 1462 aaKnown RBP20.61■□□□□ 0.89
NUP54-216ENST00000514901 NWD1Q149M9 1564 aa20.6■□□□□ 0.89
NUP54-216ENST00000514901 CLSPNQ9HAW4 1339 aa20.6■□□□□ 0.89
NUP54-216ENST00000514901 LRRC7Q96NW7 1537 aa20.6■□□□□ 0.89
NUP54-216ENST00000514901 L3MBTL2Q969R5 705 aa20.58■□□□□ 0.89
NUP54-216ENST00000514901 PTPRUQ92729 1446 aa20.58■□□□□ 0.88
NUP54-216ENST00000514901 CFAP70Q5T0N1 1121 aa20.56■□□□□ 0.88
NUP54-216ENST00000514901 NCOA3Q9Y6Q9 1424 aa20.55■□□□□ 0.88
NUP54-216ENST00000514901 FBXO41Q8TF61 875 aa20.55■□□□□ 0.88
NUP54-216ENST00000514901 TMEM94Q12767 1356 aa20.55■□□□□ 0.88
NUP54-216ENST00000514901 SETD1AO15047 1707 aaKnown RBP20.54■□□□□ 0.88
NUP54-216ENST00000514901 TOM1O60784 492 aa20.52■□□□□ 0.88
NUP54-216ENST00000514901 TMEM132EQ6IEE7 984 aa20.52■□□□□ 0.88
NUP54-216ENST00000514901 CCER1Q8TC90 406 aaPredicted RBP20.52■□□□□ 0.88
NUP54-216ENST00000514901 LRPPRCP42704 1394 aaKnown RBP20.51■□□□□ 0.87
NUP54-216ENST00000514901 TONSLQ96HA7 1378 aa20.51■□□□□ 0.87
NUP54-216ENST00000514901 ABCC11Q96J66 1382 aa20.51■□□□□ 0.87
NUP54-216ENST00000514901 LAMC1P11047 1609 aa20.51■□□□□ 0.87
NUP54-216ENST00000514901 PRAG1Q86YV5 1406 aa20.51■□□□□ 0.87
NUP54-216ENST00000514901 XRN1Q8IZH2 1706 aaKnown RBP20.5■□□□□ 0.87
NUP54-216ENST00000514901 UBAP1LF5GYI3 381 aa20.5■□□□□ 0.87
NUP54-216ENST00000514901 C14orf37Q86TY3 774 aa20.49■□□□□ 0.87
NUP54-216ENST00000514901 SIRT1Q96EB6 747 aa20.49■□□□□ 0.87
NUP54-216ENST00000514901 PTCH1Q13635 1447 aa20.49■□□□□ 0.87
NUP54-216ENST00000514901 RBM33Q96EV2 1170 aaKnown RBP20.48■□□□□ 0.87
NUP54-216ENST00000514901 C19orf44Q9H6X5 657 aa20.48■□□□□ 0.87
NUP54-216ENST00000514901 STK26Q9P289 416 aa20.48■□□□□ 0.87
NUP54-216ENST00000514901 TIMELESSQ9UNS1 1208 aa20.48■□□□□ 0.87
NUP54-216ENST00000514901 MSH6P52701 1360 aa20.47■□□□□ 0.87
NUP54-216ENST00000514901 YTHDC2Q9H6S0 1430 aaKnown RBP20.47■□□□□ 0.87
NUP54-216ENST00000514901 TECPR2O15040 1411 aa20.46■□□□□ 0.87
NUP54-216ENST00000514901 XIRP1Q702N8 1843 aaKnown RBP20.46■□□□□ 0.87
NUP54-216ENST00000514901 ROBO2Q9HCK4 1378 aa20.46■□□□□ 0.87
NUP54-216ENST00000514901 ASXL1Q8IXJ9 1541 aa20.44■□□□□ 0.86
NUP54-216ENST00000514901 CADPS2Q86UW7 1296 aa20.43■□□□□ 0.86
NUP54-216ENST00000514901 KIAA1210Q9ULL0 1709 aa20.42■□□□□ 0.86
NUP54-216ENST00000514901 ATF3P18847 181 aa20.42■□□□□ 0.86
NUP54-216ENST00000514901 FAM135BQ49AJ0 1406 aa20.42■□□□□ 0.86
NUP54-216ENST00000514901 ADGRB1O14514 1584 aa20.42■□□□□ 0.86
NUP54-216ENST00000514901 ILDR1Q86SU0 546 aaPredicted RBP20.4■□□□□ 0.86
NUP54-216ENST00000514901 KNDC1Q76NI1 1749 aa20.39■□□□□ 0.86
NUP54-216ENST00000514901 DCCP43146 1447 aa20.39■□□□□ 0.85
NUP54-216ENST00000514901 NBPF1Q3BBV0 1214 aa20.39■□□□□ 0.85
NUP54-216ENST00000514901 WAPLQ7Z5K2 1190 aa20.39■□□□□ 0.85
NUP54-216ENST00000514901 TRAK1Q9UPV9 953 aa20.39■□□□□ 0.85
NUP54-216ENST00000514901 DLC1Q96QB1 1528 aa20.38■□□□□ 0.85
NUP54-216ENST00000514901 ADGRL3Q9HAR2 1447 aa20.38■□□□□ 0.85
NUP54-216ENST00000514901 POGKQ9P215 609 aa20.38■□□□□ 0.85
NUP54-216ENST00000514901 SLAIN2Q9P270 581 aa20.38■□□□□ 0.85
NUP54-216ENST00000514901 PIP4K2BP78356 416 aa20.37■□□□□ 0.85
NUP54-216ENST00000514901 NBPF8Q3BBV2 869 aa20.36■□□□□ 0.85
NUP54-216ENST00000514901 PRAM1Q96QH2 718 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 158.7 ms