RNA–Protein interactions for RNA: ENST00000506368.5

SCLT1-208, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-208ENST00000506368 CNGB1Q14028 1251 aaPredicted RBP20.65■□□□□ 0.9
SCLT1-208ENST00000506368 PKD2Q13563 968 aa20.64■□□□□ 0.89
SCLT1-208ENST00000506368 ZNF326Q5BKZ1 582 aaKnown RBP20.64■□□□□ 0.89
SCLT1-208ENST00000506368 ZNF518AQ6AHZ1 1483 aa20.63■□□□□ 0.89
SCLT1-208ENST00000506368 ST20-MTHFSA0A0A6YYL1 179 aa20.63■□□□□ 0.89
SCLT1-208ENST00000506368 SHANK2Q9UPX8 1470 aa20.62■□□□□ 0.89
SCLT1-208ENST00000506368 CCDC141Q6ZP82 1450 aa20.62■□□□□ 0.89
SCLT1-208ENST00000506368 ARHGEF5Q12774 1597 aa20.62■□□□□ 0.89
SCLT1-208ENST00000506368 CDCA7LQ96GN5 454 aa20.61■□□□□ 0.89
SCLT1-208ENST00000506368 FRAT2O75474 233 aaPredicted RBP20.6■□□□□ 0.89
SCLT1-208ENST00000506368 ANKRD50Q9ULJ7 1429 aa20.6■□□□□ 0.89
SCLT1-208ENST00000506368 TRPM1Q7Z4N2 1603 aa20.59■□□□□ 0.89
SCLT1-208ENST00000506368 PER1O15534 1290 aaPredicted RBP20.59■□□□□ 0.89
SCLT1-208ENST00000506368 YEATS2Q9ULM3 1422 aa20.59■□□□□ 0.89
SCLT1-208ENST00000506368 KIDINS220Q9ULH0 1771 aa20.58■□□□□ 0.89
SCLT1-208ENST00000506368 SPAG9O60271 1321 aaKnown RBP20.58■□□□□ 0.88
SCLT1-208ENST00000506368 BECN1Q14457 450 aa20.57■□□□□ 0.88
SCLT1-208ENST00000506368 HECW2Q9P2P5 1572 aa20.57■□□□□ 0.88
SCLT1-208ENST00000506368 PLIN1O60240 522 aa20.57■□□□□ 0.88
SCLT1-208ENST00000506368 GPRASP1Q5JY77 1395 aa20.56■□□□□ 0.88
SCLT1-208ENST00000506368 ZFYVE16Q7Z3T8 1539 aa20.55■□□□□ 0.88
SCLT1-208ENST00000506368 TSPY4P0CV99 314 aa20.55■□□□□ 0.88
SCLT1-208ENST00000506368 TSPY10P0CW01 314 aa20.55■□□□□ 0.88
SCLT1-208ENST00000506368 C9orf84Q5VXU9 1444 aa20.55■□□□□ 0.88
SCLT1-208ENST00000506368 INO80Q9ULG1 1556 aaPredicted RBP20.55■□□□□ 0.88
SCLT1-208ENST00000506368 SLC4A3P48751 1232 aa20.55■□□□□ 0.88
SCLT1-208ENST00000506368 ATP7AQ04656 1500 aa20.54■□□□□ 0.88
SCLT1-208ENST00000506368 ABCA6Q8N139 1617 aa20.54■□□□□ 0.88
SCLT1-208ENST00000506368 RSPH4AQ5TD94 716 aa20.54■□□□□ 0.88
SCLT1-208ENST00000506368 ZMYM3Q14202 1370 aa20.53■□□□□ 0.88
SCLT1-208ENST00000506368 SENP3-EIF4A1A0A087X0R7 540 aa20.53■□□□□ 0.88
SCLT1-208ENST00000506368 DCAF11Q8TEB1 546 aa20.53■□□□□ 0.88
SCLT1-208ENST00000506368 MLH3Q9UHC1 1453 aa20.52■□□□□ 0.88
SCLT1-208ENST00000506368 CCDC144AA2RUR9 1427 aa20.51■□□□□ 0.87
SCLT1-208ENST00000506368 EIF2AK4Q9P2K8 1649 aaKnown RBP20.51■□□□□ 0.87
SCLT1-208ENST00000506368 PRAG1Q86YV5 1406 aa20.51■□□□□ 0.87
SCLT1-208ENST00000506368 SIGLEC1Q9BZZ2 1709 aa20.51■□□□□ 0.87
SCLT1-208ENST00000506368 PRDM15P57071 1507 aaPredicted RBP20.5■□□□□ 0.87
SCLT1-208ENST00000506368 NINLQ9Y2I6 1382 aa20.5■□□□□ 0.87
SCLT1-208ENST00000506368 DIP2CQ9Y2E4 1556 aa20.5■□□□□ 0.87
SCLT1-208ENST00000506368 NUP155O75694 1391 aa20.49■□□□□ 0.87
SCLT1-208ENST00000506368 MAPK8IP3Q9UPT6 1336 aa20.49■□□□□ 0.87
SCLT1-208ENST00000506368 MAST1Q9Y2H9 1570 aa20.49■□□□□ 0.87
SCLT1-208ENST00000506368 ARHGEF40Q8TER5 1519 aa20.49■□□□□ 0.87
SCLT1-208ENST00000506368 DUSP27Q5VZP5 1158 aa20.48■□□□□ 0.87
SCLT1-208ENST00000506368 ZNF521Q96K83 1311 aa20.47■□□□□ 0.87
SCLT1-208ENST00000506368 MAGI2Q86UL8 1455 aa20.46■□□□□ 0.87
SCLT1-208ENST00000506368 RTEL1-TNFRSF6BF6WH68 1400 aa20.46■□□□□ 0.87
SCLT1-208ENST00000506368 C20orf194Q5TEA3 1177 aa20.46■□□□□ 0.87
SCLT1-208ENST00000506368 GOLGA2Q08379 1002 aa20.46■□□□□ 0.87
SCLT1-208ENST00000506368 NGEFQ8N5V2 710 aa20.45■□□□□ 0.86
SCLT1-208ENST00000506368 AAMPQ13685 434 aa20.44■□□□□ 0.86
SCLT1-208ENST00000506368 SKAP1Q86WV1 359 aa20.43■□□□□ 0.86
SCLT1-208ENST00000506368 PLXNC1O60486 1568 aa20.43■□□□□ 0.86
SCLT1-208ENST00000506368 ATP10AO60312 1499 aa20.42■□□□□ 0.86
SCLT1-208ENST00000506368 CLCN1P35523 988 aa20.42■□□□□ 0.86
SCLT1-208ENST00000506368 PKNOX2Q96KN3 472 aa20.41■□□□□ 0.86
SCLT1-208ENST00000506368 ERBINQ96RT1 1412 aa20.41■□□□□ 0.86
SCLT1-208ENST00000506368 RRP9O43818 475 aaKnown RBP20.41■□□□□ 0.86
SCLT1-208ENST00000506368 CGNL1Q0VF96 1302 aa20.4■□□□□ 0.86
SCLT1-208ENST00000506368 ISY1Q9ULR0 285 aaKnown RBP20.4■□□□□ 0.86
SCLT1-208ENST00000506368 USP19O94966 1318 aa20.4■□□□□ 0.86
SCLT1-208ENST00000506368 A2MP01023 1474 aa20.4■□□□□ 0.86
SCLT1-208ENST00000506368 NKTRP30414 1462 aaKnown RBP20.4■□□□□ 0.86
SCLT1-208ENST00000506368 TMF1P82094 1093 aa20.39■□□□□ 0.86
SCLT1-208ENST00000506368 WDR43Q15061 677 aaKnown RBP eCLIP20.39■□□□□ 0.862e-6■■■■■ 30.3
SCLT1-208ENST00000506368 TRMT2AQ8IZ69 625 aaKnown RBP20.39■□□□□ 0.86
SCLT1-208ENST00000506368 RRAGDQ9NQL2 400 aaPredicted RBP20.39■□□□□ 0.86
SCLT1-208ENST00000506368 POGKQ9P215 609 aa20.39■□□□□ 0.85
SCLT1-208ENST00000506368 RGS3P49796 1198 aa20.38■□□□□ 0.85
SCLT1-208ENST00000506368 SLFN5Q08AF3 891 aa20.38■□□□□ 0.85
SCLT1-208ENST00000506368 UPF2Q9HAU5 1272 aaKnown RBP20.38■□□□□ 0.85
SCLT1-208ENST00000506368 KDM2AQ9Y2K7 1162 aa20.38■□□□□ 0.85
SCLT1-208ENST00000506368 PLEKHH1Q9ULM0 1364 aa20.38■□□□□ 0.85
SCLT1-208ENST00000506368 PIK3C2GO75747 1445 aa20.38■□□□□ 0.85
SCLT1-208ENST00000506368 PDE3AQ14432 1141 aa20.37■□□□□ 0.85
SCLT1-208ENST00000506368 CC2D1BQ5T0F9 858 aaKnown RBP20.37■□□□□ 0.85
SCLT1-208ENST00000506368 ADAMTS8Q9UP79 889 aa20.37■□□□□ 0.85
SCLT1-208ENST00000506368 GOLGA6L3A6NEY3 463 aa20.36■□□□□ 0.85
SCLT1-208ENST00000506368 MLECQ14165 292 aa20.36■□□□□ 0.85
SCLT1-208ENST00000506368 TESK2Q96S53 571 aa20.36■□□□□ 0.85
SCLT1-208ENST00000506368 PNNQ9H307 717 aaKnown RBP20.36■□□□□ 0.85
SCLT1-208ENST00000506368 PANK3Q9H999 370 aa20.36■□□□□ 0.85
SCLT1-208ENST00000506368 FSD2A1L4K1 749 aa20.36■□□□□ 0.85
SCLT1-208ENST00000506368 ANTXR1Q9H6X2 564 aa20.36■□□□□ 0.85
SCLT1-208ENST00000506368 DUOX2Q9NRD8 1548 aa20.35■□□□□ 0.85
SCLT1-208ENST00000506368 FAM135AQ9P2D6 1515 aa20.35■□□□□ 0.85
SCLT1-208ENST00000506368 NLRP1Q9C000 1473 aa20.35■□□□□ 0.85
SCLT1-208ENST00000506368 DISP3Q9P2K9 1392 aa20.34■□□□□ 0.85
SCLT1-208ENST00000506368 NPC1L1Q9UHC9 1359 aa20.34■□□□□ 0.85
SCLT1-208ENST00000506368 KIF3BO15066 747 aa20.33■□□□□ 0.85
SCLT1-208ENST00000506368 RNF17Q9BXT8 1623 aaKnown RBP20.33■□□□□ 0.85
SCLT1-208ENST00000506368 SYNMO15061 1565 aa20.32■□□□□ 0.84
SCLT1-208ENST00000506368 HSP90AA1P07900 732 aaKnown RBP20.32■□□□□ 0.84
SCLT1-208ENST00000506368 REREQ9P2R6 1566 aa20.32■□□□□ 0.84
SCLT1-208ENST00000506368 E9PSI1 815 aa20.31■□□□□ 0.84
SCLT1-208ENST00000506368 HSP90AA2PQ14568 343 aaPredicted RBP20.3■□□□□ 0.84
SCLT1-208ENST00000506368 GGT6Q6P531 493 aa20.3■□□□□ 0.84
SCLT1-208ENST00000506368 PPP2R1AP30153 589 aa20.3■□□□□ 0.84
SCLT1-208ENST00000506368 MRE11P49959 708 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms