RNA–Protein interactions for RNA: ENST00000504387.5

NEDD9-208, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene NEDD9, Length 3,211 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-208ENST00000504387 CENPJQ9HC77 1338 aaPredicted RBP9.69□□□□□ -0.86
NEDD9-208ENST00000504387 ROCK1Q13464 1354 aa9.69□□□□□ -0.86
NEDD9-208ENST00000504387 CCDC144AA2RUR9 1427 aa9.69□□□□□ -0.86
NEDD9-208ENST00000504387 TROQ12816 1431 aaPredicted RBP9.69□□□□□ -0.86
NEDD9-208ENST00000504387 TCOF1Q13428 1488 aaKnown RBP9.68□□□□□ -0.86
NEDD9-208ENST00000504387 ARHGEF11O15085 1522 aa9.68□□□□□ -0.86
NEDD9-208ENST00000504387 ESPNB1AK53 854 aa9.68□□□□□ -0.86
NEDD9-208ENST00000504387 KDM5CP41229 1560 aa9.68□□□□□ -0.86
NEDD9-208ENST00000504387 TESK2Q96S53 571 aa9.68□□□□□ -0.86
NEDD9-208ENST00000504387 GRPEL1Q9HAV7 217 aa9.68□□□□□ -0.86
NEDD9-208ENST00000504387 C9orf84Q5VXU9 1444 aa9.67□□□□□ -0.86
NEDD9-208ENST00000504387 CARMIL2Q6F5E8 1435 aa9.67□□□□□ -0.86
NEDD9-208ENST00000504387 SAFB2Q14151 953 aaKnown RBP eCLIP9.67□□□□□ -0.86
NEDD9-208ENST00000504387 FAM13BQ9NYF5 915 aa9.67□□□□□ -0.86
NEDD9-208ENST00000504387 GAS2L3Q86XJ1 694 aa9.67□□□□□ -0.86
NEDD9-208ENST00000504387 GCC2Q8IWJ2 1684 aa9.67□□□□□ -0.86
NEDD9-208ENST00000504387 PLEKHG5O94827 1062 aa9.67□□□□□ -0.86
NEDD9-208ENST00000504387 CLCN1P35523 988 aa9.66□□□□□ -0.86
NEDD9-208ENST00000504387 MPNDQ8N594 471 aa9.66□□□□□ -0.86
NEDD9-208ENST00000504387 C22orf23Q9BZE7 217 aa9.66□□□□□ -0.86
NEDD9-208ENST00000504387 GPATCH8Q9UKJ3 1502 aaKnown RBP9.66□□□□□ -0.86
NEDD9-208ENST00000504387 GRIN2AQ12879 1464 aa9.66□□□□□ -0.86
NEDD9-208ENST00000504387 TBC1D32Q96NH3 1257 aa9.65□□□□□ -0.86
NEDD9-208ENST00000504387 MAGI1Q96QZ7 1491 aaPredicted RBP9.65□□□□□ -0.86
NEDD9-208ENST00000504387 KIAA0586Q9BVV6 1533 aa9.65□□□□□ -0.87
NEDD9-208ENST00000504387 CEP170Q5SW79 1584 aa9.64□□□□□ -0.87
NEDD9-208ENST00000504387 HSP90AB1P08238 724 aaKnown RBP9.64□□□□□ -0.87
NEDD9-208ENST00000504387 KIAA1211Q6ZU35 1233 aa9.64□□□□□ -0.87
NEDD9-208ENST00000504387 HSCBQ8IWL3 235 aa9.64□□□□□ -0.87
NEDD9-208ENST00000504387 FTSJ3Q8IY81 847 aaKnown RBP9.64□□□□□ -0.87
NEDD9-208ENST00000504387 AFAP1Q8N556 730 aa9.64□□□□□ -0.87
NEDD9-208ENST00000504387 MAPK8IP3Q9UPT6 1336 aa9.64□□□□□ -0.87
NEDD9-208ENST00000504387 RRP9O43818 475 aaKnown RBP9.63□□□□□ -0.87
NEDD9-208ENST00000504387 MRE11P49959 708 aa9.63□□□□□ -0.87
NEDD9-208ENST00000504387 FOXD4L5Q5VV16 416 aaPredicted RBP9.63□□□□□ -0.87
NEDD9-208ENST00000504387 FOXD4L4Q8WXT5 416 aaPredicted RBP9.63□□□□□ -0.87
NEDD9-208ENST00000504387 PRDM10Q9NQV6 1147 aa9.63□□□□□ -0.87
NEDD9-208ENST00000504387 CHMP5Q9NZZ3 219 aa9.63□□□□□ -0.87
NEDD9-208ENST00000504387 SYNJ2O15056 1496 aa9.63□□□□□ -0.87
NEDD9-208ENST00000504387 RALGAPBQ86X10 1494 aa9.63□□□□□ -0.87
NEDD9-208ENST00000504387 TSR2Q969E8 191 aaKnown RBP9.63□□□□□ -0.87
NEDD9-208ENST00000504387 RBM42Q9BTD8 480 aaKnown RBP9.63□□□□□ -0.87
NEDD9-208ENST00000504387 PTPRGP23470 1445 aa9.63□□□□□ -0.87
NEDD9-208ENST00000504387 MBD5Q9P267 1494 aa9.62□□□□□ -0.87
NEDD9-208ENST00000504387 E9PSI1 815 aa9.62□□□□□ -0.87
NEDD9-208ENST00000504387 LNPKQ9C0E8 428 aa9.62□□□□□ -0.87
NEDD9-208ENST00000504387 R3HCC1Q9Y3T6 440 aaKnown RBP9.62□□□□□ -0.87
NEDD9-208ENST00000504387 CGNL1Q0VF96 1302 aa9.62□□□□□ -0.87
NEDD9-208ENST00000504387 AMER1Q5JTC6 1135 aaPredicted RBP9.62□□□□□ -0.87
NEDD9-208ENST00000504387 ITPRIPQ8IWB1 547 aa9.62□□□□□ -0.87
NEDD9-208ENST00000504387 PHF23Q9BUL5 403 aaPredicted RBP9.62□□□□□ -0.87
NEDD9-208ENST00000504387 DISP1Q96F81 1524 aa9.62□□□□□ -0.87
NEDD9-208ENST00000504387 FSD2A1L4K1 749 aa9.61□□□□□ -0.87
NEDD9-208ENST00000504387 WWC1Q8IX03 1113 aa9.61□□□□□ -0.87
NEDD9-208ENST00000504387 KIF3BO15066 747 aa9.61□□□□□ -0.87
NEDD9-208ENST00000504387 BLMP54132 1417 aaPredicted RBP9.61□□□□□ -0.87
NEDD9-208ENST00000504387 ERBINQ96RT1 1412 aa9.61□□□□□ -0.87
NEDD9-208ENST00000504387 TNPO1Q92973 898 aaKnown RBP9.61□□□□□ -0.87
NEDD9-208ENST00000504387 CHAMP1Q96JM3 812 aa9.61□□□□□ -0.87
NEDD9-208ENST00000504387 ZNF521Q96K83 1311 aa9.6□□□□□ -0.87
NEDD9-208ENST00000504387 KIF14Q15058 1648 aa9.6□□□□□ -0.87
NEDD9-208ENST00000504387 RWDD1Q9H446 243 aaPredicted RBP9.6□□□□□ -0.87
NEDD9-208ENST00000504387 TRAK1Q9UPV9 953 aa9.6□□□□□ -0.87
NEDD9-208ENST00000504387 ZMYM4Q5VZL5 1548 aa9.6□□□□□ -0.87
NEDD9-208ENST00000504387 CFAP70Q5T0N1 1121 aa9.6□□□□□ -0.87
NEDD9-208ENST00000504387 RARSP54136 660 aaKnown RBP9.59□□□□□ -0.87
NEDD9-208ENST00000504387 XPCQ01831 940 aaPredicted RBP9.59□□□□□ -0.87
NEDD9-208ENST00000504387 FOXD4L6Q3SYB3 417 aaPredicted RBP9.59□□□□□ -0.87
NEDD9-208ENST00000504387 FOXD4L3Q6VB84 417 aaPredicted RBP9.59□□□□□ -0.87
NEDD9-208ENST00000504387 TCP11L2Q8N4U5 519 aa9.59□□□□□ -0.87
NEDD9-208ENST00000504387 PMFBP1Q8TBY8 1022 aa9.59□□□□□ -0.87
NEDD9-208ENST00000504387 PODXL2Q9NZ53 605 aa9.59□□□□□ -0.87
NEDD9-208ENST00000504387 NUP160Q12769 1436 aa9.59□□□□□ -0.87
NEDD9-208ENST00000504387 KIAA0556O60303 1618 aa9.59□□□□□ -0.88
NEDD9-208ENST00000504387 NKTRP30414 1462 aaKnown RBP9.58□□□□□ -0.88
NEDD9-208ENST00000504387 RAPGEF6Q8TEU7 1601 aa9.58□□□□□ -0.88
NEDD9-208ENST00000504387 POLR1AO95602 1720 aaPredicted RBP9.58□□□□□ -0.88
NEDD9-208ENST00000504387 CD2BP2O95400 341 aaKnown RBP9.58□□□□□ -0.88
NEDD9-208ENST00000504387 MSNP26038 577 aaKnown RBP9.58□□□□□ -0.88
NEDD9-208ENST00000504387 SSFA2P28290 1259 aa9.58□□□□□ -0.88
NEDD9-208ENST00000504387 GGT6Q6P531 493 aa9.58□□□□□ -0.88
NEDD9-208ENST00000504387 C1orf115Q9H7X2 142 aa9.58□□□□□ -0.88
NEDD9-208ENST00000504387 DDX49Q9Y6V7 483 aaKnown RBP9.58□□□□□ -0.88
NEDD9-208ENST00000504387 DNMT1P26358 1616 aaKnown RBP9.58□□□□□ -0.88
NEDD9-208ENST00000504387 PDE3AQ14432 1141 aa9.58□□□□□ -0.88
NEDD9-208ENST00000504387 JARID2Q92833 1246 aaPredicted RBP9.58□□□□□ -0.88
NEDD9-208ENST00000504387 ZHX1Q9UKY1 873 aaPredicted RBP9.58□□□□□ -0.88
NEDD9-208ENST00000504387 EIF3AQ14152 1382 aaKnown RBP9.57□□□□□ -0.88
NEDD9-208ENST00000504387 APBB1O00213 710 aa9.57□□□□□ -0.88
NEDD9-208ENST00000504387 NASPP49321 788 aaPredicted RBP9.57□□□□□ -0.88
NEDD9-208ENST00000504387 ANP32BQ92688 251 aaKnown RBP9.57□□□□□ -0.88
NEDD9-208ENST00000504387 SMC4Q9NTJ3 1288 aa9.57□□□□□ -0.88
NEDD9-208ENST00000504387 MAGI2Q86UL8 1455 aa9.57□□□□□ -0.88
NEDD9-208ENST00000504387 U2SURPO15042 1029 aaKnown RBP9.57□□□□□ -0.88
NEDD9-208ENST00000504387 TMEM132EQ6IEE7 984 aa9.57□□□□□ -0.88
NEDD9-208ENST00000504387 MORC1Q86VD1 984 aa9.57□□□□□ -0.88
NEDD9-208ENST00000504387 STK26Q9P289 416 aa9.57□□□□□ -0.88
NEDD9-208ENST00000504387 U2AF1L5P0DN76 240 aaPredicted RBP9.56□□□□□ -0.88
NEDD9-208ENST00000504387 U2AF1Q01081 240 aaKnown RBP eCLIP9.56□□□□□ -0.881e-6■■□□□ 11.6
NEDD9-208ENST00000504387 UHRF1BP1Q6BDS2 1440 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms