RNA–Protein interactions for RNA: ENST00000494465.5

ATG4B-225, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 5

Gene ATG4B, Length 2,365 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-225ENST00000494465 POLR3GLQ9BT43 218 aa22.89■■□□□ 1.25
ATG4B-225ENST00000494465 ADGRF5Q8IZF2 1346 aa22.88■■□□□ 1.25
ATG4B-225ENST00000494465 PREX1Q8TCU6 1659 aa22.88■■□□□ 1.25
ATG4B-225ENST00000494465 SCAF11Q99590 1463 aaKnown RBP22.85■■□□□ 1.25
ATG4B-225ENST00000494465 DISP3Q9P2K9 1392 aa22.83■■□□□ 1.25
ATG4B-225ENST00000494465 CHGAP10645 457 aaKnown RBP22.83■■□□□ 1.24
ATG4B-225ENST00000494465 CFAP70Q5T0N1 1121 aa22.81■■□□□ 1.24
ATG4B-225ENST00000494465 CLTCQ00610 1675 aaKnown RBP22.8■■□□□ 1.24
ATG4B-225ENST00000494465 PPP6R1Q9UPN7 881 aa22.8■■□□□ 1.24
ATG4B-225ENST00000494465 RPGRIP1LQ68CZ1 1315 aa22.8■■□□□ 1.24
ATG4B-225ENST00000494465 PIK3C2GO75747 1445 aa22.8■■□□□ 1.24
ATG4B-225ENST00000494465 NEXMIFQ5QGS0 1516 aa22.79■■□□□ 1.24
ATG4B-225ENST00000494465 IDI1Q13907 227 aa22.78■■□□□ 1.24
ATG4B-225ENST00000494465 CCDC184Q52MB2 194 aa22.78■■□□□ 1.24
ATG4B-225ENST00000494465 GTF3C3Q9Y5Q9 886 aa22.78■■□□□ 1.24
ATG4B-225ENST00000494465 MYO5BQ9ULV0 1848 aa22.78■■□□□ 1.24
ATG4B-225ENST00000494465 SETBP1Q9Y6X0 1596 aa22.77■■□□□ 1.24
ATG4B-225ENST00000494465 SLC52A1Q9NWF4 448 aa22.77■■□□□ 1.24
ATG4B-225ENST00000494465 ERVK-7P63135 1459 aa22.77■■□□□ 1.24
ATG4B-225ENST00000494465 TMEM131LA2VDJ0 1609 aa22.76■■□□□ 1.23
ATG4B-225ENST00000494465 TMF1P82094 1093 aa22.75■■□□□ 1.23
ATG4B-225ENST00000494465 FBXO31Q5XUX0 539 aaPredicted RBP22.74■■□□□ 1.23
ATG4B-225ENST00000494465 ADGRB1O14514 1584 aa22.72■■□□□ 1.23
ATG4B-225ENST00000494465 EIF3AQ14152 1382 aaKnown RBP22.72■■□□□ 1.23
ATG4B-225ENST00000494465 MYO3AQ8NEV4 1616 aa22.72■■□□□ 1.23
ATG4B-225ENST00000494465 C14orf93Q9H972 538 aaKnown RBP22.71■■□□□ 1.23
ATG4B-225ENST00000494465 SPATA31D1Q6ZQQ2 1576 aa22.71■■□□□ 1.23
ATG4B-225ENST00000494465 PER1O15534 1290 aaPredicted RBP22.68■■□□□ 1.22
ATG4B-225ENST00000494465 MLECQ14165 292 aa22.68■■□□□ 1.22
ATG4B-225ENST00000494465 ZFYVE9O95405 1425 aa22.68■■□□□ 1.22
ATG4B-225ENST00000494465 MRS2Q9HD23 443 aa22.67■■□□□ 1.22
ATG4B-225ENST00000494465 VGFO15240 615 aaPredicted RBP22.66■■□□□ 1.22
ATG4B-225ENST00000494465 MYOM1P52179 1685 aa22.65■■□□□ 1.22
ATG4B-225ENST00000494465 NUTM2DQ5VT03 806 aaPredicted RBP22.64■■□□□ 1.22
ATG4B-225ENST00000494465 KTN1Q86UP2 1357 aaKnown RBP22.63■■□□□ 1.21
ATG4B-225ENST00000494465 CNGB1Q14028 1251 aaPredicted RBP22.63■■□□□ 1.21
ATG4B-225ENST00000494465 KDM5AP29375 1690 aaKnown RBP22.62■■□□□ 1.21
ATG4B-225ENST00000494465 SBNO2Q9Y2G9 1366 aa22.62■■□□□ 1.21
ATG4B-225ENST00000494465 PANK3Q9H999 370 aa22.62■■□□□ 1.21
ATG4B-225ENST00000494465 CDCA8Q53HL2 280 aa22.6■■□□□ 1.21
ATG4B-225ENST00000494465 TMEM132EQ6IEE7 984 aa22.6■■□□□ 1.21
ATG4B-225ENST00000494465 ZMYM3Q14202 1370 aa22.6■■□□□ 1.21
ATG4B-225ENST00000494465 RALBP1Q15311 655 aa22.59■■□□□ 1.21
ATG4B-225ENST00000494465 PARD3Q8TEW0 1356 aa22.59■■□□□ 1.21
ATG4B-225ENST00000494465 QRICH2Q9H0J4 1663 aa22.59■■□□□ 1.21
ATG4B-225ENST00000494465 ARHGEF28Q8N1W1 1705 aaKnown RBP22.58■■□□□ 1.2
ATG4B-225ENST00000494465 ASXL1Q8IXJ9 1541 aa22.58■■□□□ 1.2
ATG4B-225ENST00000494465 A2ML1A8K2U0 1454 aa22.58■■□□□ 1.2
ATG4B-225ENST00000494465 SLC24A1O60721 1099 aa22.57■■□□□ 1.2
ATG4B-225ENST00000494465 TRAK1Q9UPV9 953 aa22.57■■□□□ 1.2
ATG4B-225ENST00000494465 CENPJQ9HC77 1338 aaPredicted RBP22.56■■□□□ 1.2
ATG4B-225ENST00000494465 HNRNPUQ00839 825 aaKnown RBP eCLIP22.56■■□□□ 1.2
ATG4B-225ENST00000494465 FAM9BQ8IZU0 186 aa22.56■■□□□ 1.2
ATG4B-225ENST00000494465 MYBBP1AQ9BQG0 1328 aaKnown RBP22.56■■□□□ 1.2
ATG4B-225ENST00000494465 ESF1Q9H501 851 aaKnown RBP22.53■■□□□ 1.2
ATG4B-225ENST00000494465 BRD4O60885 1362 aaPredicted RBP22.52■■□□□ 1.2
ATG4B-225ENST00000494465 TRHP20396 242 aaPredicted RBP22.52■■□□□ 1.19
ATG4B-225ENST00000494465 STAG3Q9UJ98 1225 aa22.5■■□□□ 1.19
ATG4B-225ENST00000494465 ALKQ9UM73 1620 aa22.5■■□□□ 1.19
ATG4B-225ENST00000494465 PNISRQ8TF01 805 aaKnown RBP22.49■■□□□ 1.19
ATG4B-225ENST00000494465 CC2D1BQ5T0F9 858 aaKnown RBP22.48■■□□□ 1.19
ATG4B-225ENST00000494465 RIMS2Q9UQ26 1411 aa22.47■■□□□ 1.19
ATG4B-225ENST00000494465 TMC1Q8TDI8 760 aa22.47■■□□□ 1.19
ATG4B-225ENST00000494465 SETD1AO15047 1707 aaKnown RBP22.47■■□□□ 1.19
ATG4B-225ENST00000494465 AMER1Q5JTC6 1135 aaPredicted RBP22.46■■□□□ 1.19
ATG4B-225ENST00000494465 NLRP13Q86W25 1043 aa22.46■■□□□ 1.19
ATG4B-225ENST00000494465 TNRQ92752 1358 aa22.46■■□□□ 1.19
ATG4B-225ENST00000494465 SENP3Q9H4L4 574 aaPredicted RBP22.45■■□□□ 1.18
ATG4B-225ENST00000494465 PTPRMP28827 1452 aa22.44■■□□□ 1.18
ATG4B-225ENST00000494465 LRPPRCP42704 1394 aaKnown RBP22.44■■□□□ 1.18
ATG4B-225ENST00000494465 KNSTRNQ9Y448 316 aa22.44■■□□□ 1.18
ATG4B-225ENST00000494465 TULP4Q9NRJ4 1543 aa22.44■■□□□ 1.18
ATG4B-225ENST00000494465 YTHDC2Q9H6S0 1430 aaKnown RBP22.43■■□□□ 1.18
ATG4B-225ENST00000494465 UBR1Q8IWV7 1749 aa22.43■■□□□ 1.18
ATG4B-225ENST00000494465 NRXN3Q9Y4C0 1643 aa22.43■■□□□ 1.18
ATG4B-225ENST00000494465 NPC1L1Q9UHC9 1359 aa22.42■■□□□ 1.18
ATG4B-225ENST00000494465 ZBED9Q6R2W3 1325 aa22.41■■□□□ 1.18
ATG4B-225ENST00000494465 C3P01024 1663 aa22.41■■□□□ 1.18
ATG4B-225ENST00000494465 FER1L4A9Z1Z3 1794 aa22.4■■□□□ 1.18
ATG4B-225ENST00000494465 CARD14Q9BXL6 1004 aa22.39■■□□□ 1.18
ATG4B-225ENST00000494465 STK26Q9P289 416 aa22.39■■□□□ 1.18
ATG4B-225ENST00000494465 PUS7Q96PZ0 661 aaKnown RBP22.37■■□□□ 1.17
ATG4B-225ENST00000494465 EVC2Q86UK5 1308 aa22.36■■□□□ 1.17
ATG4B-225ENST00000494465 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.35■■□□□ 1.17
ATG4B-225ENST00000494465 DNAJC5Q9H3Z4 198 aa22.35■■□□□ 1.17
ATG4B-225ENST00000494465 CEBPAP49715 358 aaPredicted RBP22.34■■□□□ 1.17
ATG4B-225ENST00000494465 NLRP1Q9C000 1473 aa22.34■■□□□ 1.17
ATG4B-225ENST00000494465 DLC1Q96QB1 1528 aa22.34■■□□□ 1.17
ATG4B-225ENST00000494465 TMEM2Q9UHN6 1383 aa22.33■■□□□ 1.17
ATG4B-225ENST00000494465 SAFB2Q14151 953 aaKnown RBP eCLIP22.33■■□□□ 1.16
ATG4B-225ENST00000494465 PRAM1Q96QH2 718 aa22.33■■□□□ 1.16
ATG4B-225ENST00000494465 SLC12A5Q9H2X9 1139 aa22.33■■□□□ 1.16
ATG4B-225ENST00000494465 PPP2R1AP30153 589 aa22.32■■□□□ 1.16
ATG4B-225ENST00000494465 SUPT16HQ9Y5B9 1047 aaKnown RBP22.32■■□□□ 1.16
ATG4B-225ENST00000494465 USP32Q8NFA0 1604 aa22.29■■□□□ 1.16
ATG4B-225ENST00000494465 CABP2Q9NPB3 220 aa22.28■■□□□ 1.16
ATG4B-225ENST00000494465 NSD3Q9BZ95 1437 aa22.28■■□□□ 1.16
ATG4B-225ENST00000494465 ABCC11Q96J66 1382 aa22.28■■□□□ 1.16
ATG4B-225ENST00000494465 METP08581 1390 aa22.28■■□□□ 1.16
ATG4B-225ENST00000494465 HDGFP51858 240 aaKnown RBP22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms