RNA–Protein interactions for RNA: ENST00000494465.5

ATG4B-225, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 5

Gene ATG4B, Length 2,365 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-225ENST00000494465 NISCHQ9Y2I1 1504 aa36.97■■■■□ 3.51
ATG4B-225ENST00000494465 CCDC180Q9P1Z9 1646 aa32.08■■■□□ 2.73
ATG4B-225ENST00000494465 ZCCHC6Q5VYS8 1495 aaKnown RBP31.12■■■□□ 2.57
ATG4B-225ENST00000494465 DCAF1Q9Y4B6 1507 aa30.54■■■□□ 2.48
ATG4B-225ENST00000494465 DCAF8L2P0C7V8 631 aa30.4■■■□□ 2.46
ATG4B-225ENST00000494465 SHROOM4Q9ULL8 1493 aa30.39■■■□□ 2.45
ATG4B-225ENST00000494465 ABCC9O60706 1549 aa30.11■■■□□ 2.41
ATG4B-225ENST00000494465 MYO15BQ96JP2 1530 aa30.06■■■□□ 2.4
ATG4B-225ENST00000494465 NACADO15069 1562 aa29.8■■■□□ 2.36
ATG4B-225ENST00000494465 SCRIBQ14160 1630 aa29.59■■■□□ 2.33
ATG4B-225ENST00000494465 RB1CC1Q8TDY2 1594 aa29.47■■■□□ 2.31
ATG4B-225ENST00000494465 SUPT5HO00267 1087 aaKnown RBP29.34■■■□□ 2.29
ATG4B-225ENST00000494465 UNC13AQ9UPW8 1703 aa29.02■■■□□ 2.24
ATG4B-225ENST00000494465 RSF1Q96T23 1441 aaPredicted RBP28.81■■■□□ 2.2
ATG4B-225ENST00000494465 CECR2Q9BXF3 1484 aa28.75■■■□□ 2.19
ATG4B-225ENST00000494465 BICRAQ9NZM4 1560 aa28.67■■■□□ 2.18
ATG4B-225ENST00000494465 MROH2BQ7Z745 1585 aa28.61■■■□□ 2.17
ATG4B-225ENST00000494465 BAZ1AQ9NRL2 1556 aaPredicted RBP28.49■■■□□ 2.15
ATG4B-225ENST00000494465 PABPN1Q86U42 306 aaKnown RBP eCLIP28.46■■■□□ 2.15
ATG4B-225ENST00000494465 WIZO95785 1651 aa28.41■■■□□ 2.14
ATG4B-225ENST00000494465 SMARCA4P51532 1647 aa28.37■■■□□ 2.13
ATG4B-225ENST00000494465 CHIC1Q5VXU3 224 aa28.26■■■□□ 2.11
ATG4B-225ENST00000494465 TOP2AP11388 1531 aaKnown RBP28.06■■■□□ 2.08
ATG4B-225ENST00000494465 PEG3Q9GZU2 1588 aa28.01■■■□□ 2.07
ATG4B-225ENST00000494465 SMARCA2P51531 1590 aa27.84■■■□□ 2.05
ATG4B-225ENST00000494465 ATAD2BQ9ULI0 1458 aa27.82■■■□□ 2.04
ATG4B-225ENST00000494465 CCDC88BA6NC98 1476 aa27.81■■■□□ 2.04
ATG4B-225ENST00000494465 EIF4G1Q04637 1599 aaKnown RBP27.77■■■□□ 2.04
ATG4B-225ENST00000494465 BAZ1BQ9UIG0 1483 aaKnown RBP27.65■■■□□ 2.02
ATG4B-225ENST00000494465 TRIM41Q8WV44 630 aa27.53■■■□□ 2
ATG4B-225ENST00000494465 NCAPD3P42695 1498 aa27.51■■■□□ 2
ATG4B-225ENST00000494465 HMGXB3Q12766 1538 aa27.5■■□□□ 1.99
ATG4B-225ENST00000494465 ABCC8Q09428 1581 aa27.34■■□□□ 1.97
ATG4B-225ENST00000494465 CC2D2AQ9P2K1 1620 aa27.27■■□□□ 1.96
ATG4B-225ENST00000494465 LOC105371045A0A1W2PR82 267 aa27.22■■□□□ 1.95
ATG4B-225ENST00000494465 FAM9AQ8IZU1 332 aaPredicted RBP27.08■■□□□ 1.93
ATG4B-225ENST00000494465 WRNQ14191 1432 aaPredicted RBP eCLIP27.07■■□□□ 1.92
ATG4B-225ENST00000494465 SYNJ1O43426 1573 aa27.01■■□□□ 1.91
ATG4B-225ENST00000494465 CFTRP13569 1480 aa27■■□□□ 1.91
ATG4B-225ENST00000494465 PRDM2Q13029 1718 aa26.9■■□□□ 1.9
ATG4B-225ENST00000494465 SOGA1O94964 1423 aa26.88■■□□□ 1.89
ATG4B-225ENST00000494465 TOP2BQ02880 1626 aa26.84■■□□□ 1.89
ATG4B-225ENST00000494465 CADPSQ9ULU8 1353 aa26.82■■□□□ 1.88
ATG4B-225ENST00000494465 BIVM-ERCC5R4GMW8 1640 aa26.81■■□□□ 1.88
ATG4B-225ENST00000494465 RUSC2Q8N2Y8 1516 aa26.79■■□□□ 1.88
ATG4B-225ENST00000494465 EEA1Q15075 1411 aa26.78■■□□□ 1.88
ATG4B-225ENST00000494465 CUX1P39880 1505 aa26.72■■□□□ 1.87
ATG4B-225ENST00000494465 EHMT2Q96KQ7 1210 aa26.71■■□□□ 1.87
ATG4B-225ENST00000494465 CSRNP3Q8WYN3 585 aa26.64■■□□□ 1.86
ATG4B-225ENST00000494465 DNAJC5BQ9UF47 199 aa26.58■■□□□ 1.85
ATG4B-225ENST00000494465 NESP48681 1621 aa26.57■■□□□ 1.84
ATG4B-225ENST00000494465 FANCD2Q9BXW9 1451 aa26.54■■□□□ 1.84
ATG4B-225ENST00000494465 LAMC3Q9Y6N6 1575 aa26.52■■□□□ 1.84
ATG4B-225ENST00000494465 KIF21BO75037 1637 aa26.48■■□□□ 1.83
ATG4B-225ENST00000494465 GOLGA3Q08378 1498 aa26.46■■□□□ 1.83
ATG4B-225ENST00000494465 TNIKQ9UKE5 1360 aa26.44■■□□□ 1.82
ATG4B-225ENST00000494465 CEP164Q9UPV0 1460 aa26.43■■□□□ 1.82
ATG4B-225ENST00000494465 FGD5Q6ZNL6 1462 aa26.36■■□□□ 1.81
ATG4B-225ENST00000494465 DNMBPQ6XZF7 1577 aa26.35■■□□□ 1.81
ATG4B-225ENST00000494465 CEP162Q5TB80 1403 aa26.34■■□□□ 1.81
ATG4B-225ENST00000494465 KIF27Q86VH2 1401 aa26.33■■□□□ 1.81
ATG4B-225ENST00000494465 RAPGEF2Q9Y4G8 1499 aa26.31■■□□□ 1.8
ATG4B-225ENST00000494465 UBTFP17480 764 aaKnown RBP26.31■■□□□ 1.8
ATG4B-225ENST00000494465 TOPBP1Q92547 1522 aa26.3■■□□□ 1.8
ATG4B-225ENST00000494465 PRXQ9BXM0 1461 aa26.28■■□□□ 1.8
ATG4B-225ENST00000494465 PDS5BQ9NTI5 1447 aa26.27■■□□□ 1.8
ATG4B-225ENST00000494465 KIF21AQ7Z4S6 1674 aa26.25■■□□□ 1.79
ATG4B-225ENST00000494465 ERICH3Q5RHP9 1530 aa26.24■■□□□ 1.79
ATG4B-225ENST00000494465 URB2Q14146 1524 aaKnown RBP26.23■■□□□ 1.79
ATG4B-225ENST00000494465 PCGF6Q9BYE7 350 aa26.23■■□□□ 1.79
ATG4B-225ENST00000494465 CUX2O14529 1486 aa26.23■■□□□ 1.79
ATG4B-225ENST00000494465 POLA1P09884 1462 aaPredicted RBP26.2■■□□□ 1.79
ATG4B-225ENST00000494465 RAD54L2Q9Y4B4 1467 aa26.14■■□□□ 1.78
ATG4B-225ENST00000494465 ABCA10Q8WWZ4 1543 aa26.13■■□□□ 1.77
ATG4B-225ENST00000494465 TRIM26Q12899 539 aaPredicted RBP26.12■■□□□ 1.77
ATG4B-225ENST00000494465 IGF1RP08069 1367 aa26.12■■□□□ 1.77
ATG4B-225ENST00000494465 WDR97A6NE52 1622 aa26.06■■□□□ 1.76
ATG4B-225ENST00000494465 CLIP1P30622 1438 aa26.05■■□□□ 1.76
ATG4B-225ENST00000494465 CARMIL1Q5VZK9 1371 aa25.97■■□□□ 1.75
ATG4B-225ENST00000494465 MRC2Q9UBG0 1479 aa25.95■■□□□ 1.74
ATG4B-225ENST00000494465 ABCA5Q8WWZ7 1642 aa25.92■■□□□ 1.74
ATG4B-225ENST00000494465 PPARGC1BQ86YN6 1023 aaKnown RBP25.92■■□□□ 1.74
ATG4B-225ENST00000494465 TARBP1Q13395 1621 aaKnown RBP25.91■■□□□ 1.74
ATG4B-225ENST00000494465 VPS8Q8N3P4 1428 aa25.87■■□□□ 1.73
ATG4B-225ENST00000494465 CUL7Q14999 1698 aa25.87■■□□□ 1.73
ATG4B-225ENST00000494465 TDRD9Q8NDG6 1382 aaKnown RBP25.84■■□□□ 1.73
ATG4B-225ENST00000494465 RANGAP1P46060 587 aaPredicted RBP25.83■■□□□ 1.73
ATG4B-225ENST00000494465 WDR62O43379 1518 aa25.83■■□□□ 1.73
ATG4B-225ENST00000494465 ARAP1Q96P48 1450 aa25.82■■□□□ 1.72
ATG4B-225ENST00000494465 GAPVD1Q14C86 1478 aa25.81■■□□□ 1.72
ATG4B-225ENST00000494465 ARHGAP35Q9NRY4 1499 aa25.75■■□□□ 1.71
ATG4B-225ENST00000494465 ERCC6Q03468 1493 aa25.73■■□□□ 1.71
ATG4B-225ENST00000494465 THOC2Q8NI27 1593 aaKnown RBP25.72■■□□□ 1.71
ATG4B-225ENST00000494465 HRCP23327 699 aa25.7■■□□□ 1.71
ATG4B-225ENST00000494465 PBRM1Q86U86 1689 aa25.69■■□□□ 1.7
ATG4B-225ENST00000494465 IFT140Q96RY7 1462 aa25.67■■□□□ 1.7
ATG4B-225ENST00000494465 CTTNBP2Q8WZ74 1663 aa25.65■■□□□ 1.7
ATG4B-225ENST00000494465 AQRO60306 1485 aaKnown RBP eCLIP25.63■■□□□ 1.693e-7■■■■□ 19.9
ATG4B-225ENST00000494465 TTBK1Q5TCY1 1321 aaPredicted RBP25.63■■□□□ 1.69
ATG4B-225ENST00000494465 ZNF608Q9ULD9 1512 aaPredicted RBP25.6■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms