RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 MYOM2P54296 1465 aa20■□□□□ 0.79
C9orf3-221ENST00000489562 ARHGAP23Q9P227 1491 aa20■□□□□ 0.79
C9orf3-221ENST00000489562 TMEM2Q9UHN6 1383 aa20■□□□□ 0.79
C9orf3-221ENST00000489562 ZEB1P37275 1124 aaPredicted RBP20■□□□□ 0.79
C9orf3-221ENST00000489562 HDGFP51858 240 aaKnown RBP20■□□□□ 0.79
C9orf3-221ENST00000489562 L3MBTL2Q969R5 705 aa20■□□□□ 0.79
C9orf3-221ENST00000489562 ZFYVE9O95405 1425 aa19.99■□□□□ 0.79
C9orf3-221ENST00000489562 RIMS2Q9UQ26 1411 aa19.99■□□□□ 0.79
C9orf3-221ENST00000489562 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.98■□□□□ 0.79
C9orf3-221ENST00000489562 LMTK3Q96Q04 1460 aa19.98■□□□□ 0.79
C9orf3-221ENST00000489562 POLR1AO95602 1720 aaPredicted RBP19.97■□□□□ 0.79
C9orf3-221ENST00000489562 DCAF11Q8TEB1 546 aa19.97■□□□□ 0.79
C9orf3-221ENST00000489562 VGFO15240 615 aaPredicted RBP19.95■□□□□ 0.78
C9orf3-221ENST00000489562 ILDR1Q86SU0 546 aaPredicted RBP19.94■□□□□ 0.78
C9orf3-221ENST00000489562 EID1Q9Y6B2 187 aa19.94■□□□□ 0.78
C9orf3-221ENST00000489562 NRXN1Q9ULB1 1477 aa19.93■□□□□ 0.78
C9orf3-221ENST00000489562 SCAF11Q99590 1463 aaKnown RBP19.92■□□□□ 0.78
C9orf3-221ENST00000489562 LAMC1P11047 1609 aa19.91■□□□□ 0.78
C9orf3-221ENST00000489562 KIAA1210Q9ULL0 1709 aa19.91■□□□□ 0.78
C9orf3-221ENST00000489562 KDM2AQ9Y2K7 1162 aa19.91■□□□□ 0.78
C9orf3-221ENST00000489562 PPP1R15AO75807 674 aaPredicted RBP19.9■□□□□ 0.78
C9orf3-221ENST00000489562 ANKLE2Q86XL3 938 aa19.9■□□□□ 0.78
C9orf3-221ENST00000489562 PRAG1Q86YV5 1406 aa19.9■□□□□ 0.78
C9orf3-221ENST00000489562 TXNDC2Q86VQ3 553 aa19.89■□□□□ 0.77
C9orf3-221ENST00000489562 SETBP1Q9Y6X0 1596 aa19.88■□□□□ 0.77
C9orf3-221ENST00000489562 PIK3C2GO75747 1445 aa19.88■□□□□ 0.77
C9orf3-221ENST00000489562 PLEKHG1Q9ULL1 1385 aa19.88■□□□□ 0.77
C9orf3-221ENST00000489562 ADGRF5Q8IZF2 1346 aa19.87■□□□□ 0.77
C9orf3-221ENST00000489562 IQGAP1P46940 1657 aa19.87■□□□□ 0.77
C9orf3-221ENST00000489562 TRPM1Q7Z4N2 1603 aa19.87■□□□□ 0.77
C9orf3-221ENST00000489562 MED14O60244 1454 aa19.86■□□□□ 0.77
C9orf3-221ENST00000489562 LTKP29376 864 aa19.86■□□□□ 0.77
C9orf3-221ENST00000489562 NRXN3Q9Y4C0 1643 aa19.85■□□□□ 0.77
C9orf3-221ENST00000489562 NUTM2DQ5VT03 806 aaPredicted RBP19.85■□□□□ 0.77
C9orf3-221ENST00000489562 DIP2AQ14689 1571 aa19.85■□□□□ 0.77
C9orf3-221ENST00000489562 STRCQ7RTU9 1775 aa19.84■□□□□ 0.77
C9orf3-221ENST00000489562 SETD1AO15047 1707 aaKnown RBP19.83■□□□□ 0.77
C9orf3-221ENST00000489562 HSPA2P54652 639 aa19.83■□□□□ 0.77
C9orf3-221ENST00000489562 RALGAPBQ86X10 1494 aa19.82■□□□□ 0.76
C9orf3-221ENST00000489562 ALKQ9UM73 1620 aa19.82■□□□□ 0.76
C9orf3-221ENST00000489562 NBPF8Q3BBV2 869 aa19.81■□□□□ 0.76
C9orf3-221ENST00000489562 NPHP4O75161 1426 aaPredicted RBP19.81■□□□□ 0.76
C9orf3-221ENST00000489562 C14orf93Q9H972 538 aaKnown RBP19.8■□□□□ 0.76
C9orf3-221ENST00000489562 ADAMTS13Q76LX8 1427 aa19.78■□□□□ 0.76
C9orf3-221ENST00000489562 BCANQ96GW7 911 aa19.78■□□□□ 0.76
C9orf3-221ENST00000489562 NCKAP5LQ9HCH0 1330 aa19.77■□□□□ 0.76
C9orf3-221ENST00000489562 GPRASP1Q5JY77 1395 aa19.76■□□□□ 0.75
C9orf3-221ENST00000489562 ROCK2O75116 1388 aaKnown RBP19.75■□□□□ 0.75
C9orf3-221ENST00000489562 CFAP70Q5T0N1 1121 aa19.75■□□□□ 0.75
C9orf3-221ENST00000489562 TBX22Q9Y458 520 aa19.75■□□□□ 0.75
C9orf3-221ENST00000489562 ADGRB1O14514 1584 aa19.74■□□□□ 0.75
C9orf3-221ENST00000489562 PIK3R4Q99570 1358 aa19.73■□□□□ 0.75
C9orf3-221ENST00000489562 ASXL1Q8IXJ9 1541 aa19.72■□□□□ 0.75
C9orf3-221ENST00000489562 DMRT2Q9Y5R5 561 aa19.72■□□□□ 0.75
C9orf3-221ENST00000489562 CHD2O14647 1828 aaKnown RBP19.72■□□□□ 0.75
C9orf3-221ENST00000489562 KNDC1Q76NI1 1749 aa19.71■□□□□ 0.75
C9orf3-221ENST00000489562 SLC26A8Q96RN1 970 aa19.7■□□□□ 0.74
C9orf3-221ENST00000489562 NBPF1Q3BBV0 1214 aa19.69■□□□□ 0.74
C9orf3-221ENST00000489562 SENP3Q9H4L4 574 aaPredicted RBP19.69■□□□□ 0.74
C9orf3-221ENST00000489562 CARD11Q9BXL7 1154 aa19.68■□□□□ 0.74
C9orf3-221ENST00000489562 METP08581 1390 aa19.68■□□□□ 0.74
C9orf3-221ENST00000489562 YTHDC2Q9H6S0 1430 aaKnown RBP19.68■□□□□ 0.74
C9orf3-221ENST00000489562 XRN1Q8IZH2 1706 aaKnown RBP19.67■□□□□ 0.74
C9orf3-221ENST00000489562 LRPPRCP42704 1394 aaKnown RBP19.67■□□□□ 0.74
C9orf3-221ENST00000489562 ARHGEF28Q8N1W1 1705 aaKnown RBP19.66■□□□□ 0.74
C9orf3-221ENST00000489562 DLC1Q96QB1 1528 aa19.66■□□□□ 0.74
C9orf3-221ENST00000489562 NWD1Q149M9 1564 aa19.66■□□□□ 0.74
C9orf3-221ENST00000489562 TMEM132EQ6IEE7 984 aa19.65■□□□□ 0.74
C9orf3-221ENST00000489562 EIF3AQ14152 1382 aaKnown RBP19.65■□□□□ 0.74
C9orf3-221ENST00000489562 TECPR2O15040 1411 aa19.65■□□□□ 0.74
C9orf3-221ENST00000489562 CPS1P31327 1500 aa19.65■□□□□ 0.74
C9orf3-221ENST00000489562 ABCC11Q96J66 1382 aa19.64■□□□□ 0.73
C9orf3-221ENST00000489562 PTCH1Q13635 1447 aa19.61■□□□□ 0.73
C9orf3-221ENST00000489562 PTPRUQ92729 1446 aa19.61■□□□□ 0.73
C9orf3-221ENST00000489562 USP47Q96K76 1375 aa19.61■□□□□ 0.73
C9orf3-221ENST00000489562 NKTRP30414 1462 aaKnown RBP19.6■□□□□ 0.73
C9orf3-221ENST00000489562 KCNA6P17658 529 aa19.6■□□□□ 0.73
C9orf3-221ENST00000489562 SIRT1Q96EB6 747 aa19.6■□□□□ 0.73
C9orf3-221ENST00000489562 FAM135BQ49AJ0 1406 aa19.59■□□□□ 0.73
C9orf3-221ENST00000489562 EIF4G2P78344 907 aaKnown RBP eCLIP19.59■□□□□ 0.73
C9orf3-221ENST00000489562 AMOTL2Q9Y2J4 779 aa19.59■□□□□ 0.73
C9orf3-221ENST00000489562 STRCP1A6NGW2 1772 aa19.58■□□□□ 0.73
C9orf3-221ENST00000489562 STK26Q9P289 416 aa19.58■□□□□ 0.72
C9orf3-221ENST00000489562 TRAK1Q9UPV9 953 aa19.58■□□□□ 0.72
C9orf3-221ENST00000489562 QRICH2Q9H0J4 1663 aa19.58■□□□□ 0.72
C9orf3-221ENST00000489562 CENPJQ9HC77 1338 aaPredicted RBP19.54■□□□□ 0.72
C9orf3-221ENST00000489562 SLC24A1O60721 1099 aa19.53■□□□□ 0.72
C9orf3-221ENST00000489562 ROBO2Q9HCK4 1378 aa19.53■□□□□ 0.72
C9orf3-221ENST00000489562 SBNO2Q9Y2G9 1366 aa19.53■□□□□ 0.72
C9orf3-221ENST00000489562 HSPA5P11021 654 aaKnown RBP19.52■□□□□ 0.72
C9orf3-221ENST00000489562 POGKQ9P215 609 aa19.52■□□□□ 0.72
C9orf3-221ENST00000489562 ST20-MTHFSA0A0A6YYL1 179 aa19.51■□□□□ 0.71
C9orf3-221ENST00000489562 PRAM1Q96QH2 718 aa19.51■□□□□ 0.71
C9orf3-221ENST00000489562 NCOA3Q9Y6Q9 1424 aa19.5■□□□□ 0.71
C9orf3-221ENST00000489562 ZNF335Q9H4Z2 1342 aaPredicted RBP19.5■□□□□ 0.71
C9orf3-221ENST00000489562 ADGRB2O60241 1585 aa19.49■□□□□ 0.71
C9orf3-221ENST00000489562 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.48■□□□□ 0.71
C9orf3-221ENST00000489562 WAPLQ7Z5K2 1190 aa19.47■□□□□ 0.71
C9orf3-221ENST00000489562 PROSER2Q86WR7 435 aaPredicted RBP19.47■□□□□ 0.71
C9orf3-221ENST00000489562 NALCNQ8IZF0 1738 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 194.7 ms