RNA–Protein interactions for RNA: ENST00000488801.5

PTCD3-217, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 568 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-217ENST00000488801 FOXD1Q16676 465 aa27.69■■■□□ 2.02
PTCD3-217ENST00000488801 NRXN3Q9Y4C0 1643 aa27.68■■■□□ 2.02
PTCD3-217ENST00000488801 STAG3Q9UJ98 1225 aa27.68■■■□□ 2.02
PTCD3-217ENST00000488801 CCDC144AA2RUR9 1427 aa27.66■■■□□ 2.02
PTCD3-217ENST00000488801 SPATA31E1Q6ZUB1 1445 aa27.65■■■□□ 2.02
PTCD3-217ENST00000488801 ANKRD30BQ9BXX2 1392 aa27.63■■■□□ 2.01
PTCD3-217ENST00000488801 SETD1AO15047 1707 aaKnown RBP27.63■■■□□ 2.01
PTCD3-217ENST00000488801 DIP2AQ14689 1571 aa27.62■■■□□ 2.01
PTCD3-217ENST00000488801 SETBP1Q9Y6X0 1596 aa27.62■■■□□ 2.01
PTCD3-217ENST00000488801 CHD2O14647 1828 aaKnown RBP27.62■■■□□ 2.01
PTCD3-217ENST00000488801 TXNDC2Q86VQ3 553 aa27.61■■■□□ 2.01
PTCD3-217ENST00000488801 PLEKHG1Q9ULL1 1385 aa27.6■■■□□ 2.01
PTCD3-217ENST00000488801 EID1Q9Y6B2 187 aa27.59■■■□□ 2.01
PTCD3-217ENST00000488801 NWD1Q149M9 1564 aa27.59■■■□□ 2.01
PTCD3-217ENST00000488801 XIRP1Q702N8 1843 aaKnown RBP27.57■■■□□ 2
PTCD3-217ENST00000488801 CHGAP10645 457 aaKnown RBP27.56■■■□□ 2
PTCD3-217ENST00000488801 ADAMTS13Q76LX8 1427 aa27.54■■■□□ 2
PTCD3-217ENST00000488801 CPS1P31327 1500 aa27.53■■■□□ 2
PTCD3-217ENST00000488801 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.53■■■□□ 2
PTCD3-217ENST00000488801 ZNF335Q9H4Z2 1342 aaPredicted RBP27.51■■□□□ 1.99
PTCD3-217ENST00000488801 IQSEC2Q5JU85 1478 aa27.51■■□□□ 1.99
PTCD3-217ENST00000488801 HDGFP51858 240 aaKnown RBP27.49■■□□□ 1.99
PTCD3-217ENST00000488801 XRN1Q8IZH2 1706 aaKnown RBP27.47■■□□□ 1.99
PTCD3-217ENST00000488801 RPGRIP1LQ68CZ1 1315 aa27.47■■□□□ 1.99
PTCD3-217ENST00000488801 DHX57Q6P158 1386 aaKnown RBP27.47■■□□□ 1.99
PTCD3-217ENST00000488801 MYOM2P54296 1465 aa27.45■■□□□ 1.99
PTCD3-217ENST00000488801 ZNF326Q5BKZ1 582 aaKnown RBP27.44■■□□□ 1.98
PTCD3-217ENST00000488801 NRXN1Q9ULB1 1477 aa27.44■■□□□ 1.98
PTCD3-217ENST00000488801 PPP1R15AO75807 674 aaPredicted RBP27.43■■□□□ 1.98
PTCD3-217ENST00000488801 NUTM2DQ5VT03 806 aaPredicted RBP27.42■■□□□ 1.98
PTCD3-217ENST00000488801 NKTRP30414 1462 aaKnown RBP27.42■■□□□ 1.98
PTCD3-217ENST00000488801 LAMC1P11047 1609 aa27.41■■□□□ 1.98
PTCD3-217ENST00000488801 ALKQ9UM73 1620 aa27.41■■□□□ 1.98
PTCD3-217ENST00000488801 LRRC7Q96NW7 1537 aa27.4■■□□□ 1.98
PTCD3-217ENST00000488801 PIK3R4Q99570 1358 aa27.39■■□□□ 1.98
PTCD3-217ENST00000488801 TBX22Q9Y458 520 aa27.38■■□□□ 1.97
PTCD3-217ENST00000488801 PIK3C2GO75747 1445 aa27.38■■□□□ 1.97
PTCD3-217ENST00000488801 CERKQ8TCT0 537 aa27.37■■□□□ 1.97
PTCD3-217ENST00000488801 SLC26A8Q96RN1 970 aa27.37■■□□□ 1.97
PTCD3-217ENST00000488801 KNDC1Q76NI1 1749 aa27.35■■□□□ 1.97
PTCD3-217ENST00000488801 ASXL1Q8IXJ9 1541 aa27.35■■□□□ 1.97
PTCD3-217ENST00000488801 VGFO15240 615 aaPredicted RBP27.34■■□□□ 1.97
PTCD3-217ENST00000488801 PTPRUQ92729 1446 aa27.33■■□□□ 1.97
PTCD3-217ENST00000488801 PRAG1Q86YV5 1406 aa27.33■■□□□ 1.96
PTCD3-217ENST00000488801 RGL3Q3MIN7 710 aa27.31■■□□□ 1.96
PTCD3-217ENST00000488801 KCNA6P17658 529 aa27.3■■□□□ 1.96
PTCD3-217ENST00000488801 ADGRF5Q8IZF2 1346 aa27.3■■□□□ 1.96
PTCD3-217ENST00000488801 KIAA1210Q9ULL0 1709 aa27.3■■□□□ 1.96
PTCD3-217ENST00000488801 METP08581 1390 aa27.28■■□□□ 1.96
PTCD3-217ENST00000488801 BCANQ96GW7 911 aa27.26■■□□□ 1.95
PTCD3-217ENST00000488801 PCGF6Q9BYE7 350 aa27.26■■□□□ 1.95
PTCD3-217ENST00000488801 SENP3Q9H4L4 574 aaPredicted RBP27.26■■□□□ 1.95
PTCD3-217ENST00000488801 NALCNQ8IZF0 1738 aa27.23■■□□□ 1.95
PTCD3-217ENST00000488801 PTCH1Q13635 1447 aa27.21■■□□□ 1.95
PTCD3-217ENST00000488801 ADGRB1O14514 1584 aa27.21■■□□□ 1.95
PTCD3-217ENST00000488801 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.2■■□□□ 1.94
PTCD3-217ENST00000488801 TECPR2O15040 1411 aa27.18■■□□□ 1.94
PTCD3-217ENST00000488801 NCOA3Q9Y6Q9 1424 aa27.18■■□□□ 1.94
PTCD3-217ENST00000488801 STAC3Q96MF2 364 aa27.18■■□□□ 1.94
PTCD3-217ENST00000488801 TMEM94Q12767 1356 aa27.18■■□□□ 1.94
PTCD3-217ENST00000488801 FBXO41Q8TF61 875 aa27.15■■□□□ 1.94
PTCD3-217ENST00000488801 SIN3AQ96ST3 1273 aa27.15■■□□□ 1.94
PTCD3-217ENST00000488801 AMOTL2Q9Y2J4 779 aa27.14■■□□□ 1.94
PTCD3-217ENST00000488801 TRPM1Q7Z4N2 1603 aa27.14■■□□□ 1.94
PTCD3-217ENST00000488801 C14orf93Q9H972 538 aaKnown RBP27.13■■□□□ 1.93
PTCD3-217ENST00000488801 ARHGEF28Q8N1W1 1705 aaKnown RBP27.13■■□□□ 1.93
PTCD3-217ENST00000488801 DCAF11Q8TEB1 546 aa27.12■■□□□ 1.93
PTCD3-217ENST00000488801 LRPPRCP42704 1394 aaKnown RBP27.1■■□□□ 1.93
PTCD3-217ENST00000488801 DLC1Q96QB1 1528 aa27.1■■□□□ 1.93
PTCD3-217ENST00000488801 YTHDC2Q9H6S0 1430 aaKnown RBP27.09■■□□□ 1.93
PTCD3-217ENST00000488801 PROSER2Q86WR7 435 aaPredicted RBP27.09■■□□□ 1.93
PTCD3-217ENST00000488801 ROBO2Q9HCK4 1378 aa27.08■■□□□ 1.93
PTCD3-217ENST00000488801 ABCC11Q96J66 1382 aa27.07■■□□□ 1.92
PTCD3-217ENST00000488801 DCCP43146 1447 aa27.06■■□□□ 1.92
PTCD3-217ENST00000488801 ADGRL3Q9HAR2 1447 aa27.06■■□□□ 1.92
PTCD3-217ENST00000488801 CFAP70Q5T0N1 1121 aa27.05■■□□□ 1.92
PTCD3-217ENST00000488801 L3MBTL2Q969R5 705 aa27.04■■□□□ 1.92
PTCD3-217ENST00000488801 CLSPNQ9HAW4 1339 aa27.04■■□□□ 1.92
PTCD3-217ENST00000488801 CDC42BPGQ6DT37 1551 aa27.03■■□□□ 1.92
PTCD3-217ENST00000488801 KDM2AQ9Y2K7 1162 aa27.03■■□□□ 1.92
PTCD3-217ENST00000488801 MSH6P52701 1360 aa27.02■■□□□ 1.92
PTCD3-217ENST00000488801 ILDR1Q86SU0 546 aaPredicted RBP27.02■■□□□ 1.92
PTCD3-217ENST00000488801 RBM33Q96EV2 1170 aaKnown RBP27.02■■□□□ 1.92
PTCD3-217ENST00000488801 ROBO1Q9Y6N7 1651 aa27.01■■□□□ 1.92
PTCD3-217ENST00000488801 FAM135BQ49AJ0 1406 aa27.01■■□□□ 1.91
PTCD3-217ENST00000488801 NEUROD1Q13562 356 aa27■■□□□ 1.91
PTCD3-217ENST00000488801 TMEM132EQ6IEE7 984 aa27■■□□□ 1.91
PTCD3-217ENST00000488801 UBAP1LF5GYI3 381 aa26.99■■□□□ 1.91
PTCD3-217ENST00000488801 ADGRB2O60241 1585 aa26.99■■□□□ 1.91
PTCD3-217ENST00000488801 FMN2Q9NZ56 1722 aa26.98■■□□□ 1.91
PTCD3-217ENST00000488801 TOM1O60784 492 aa26.96■■□□□ 1.91
PTCD3-217ENST00000488801 SIRT1Q96EB6 747 aa26.94■■□□□ 1.9
PTCD3-217ENST00000488801 TONSLQ96HA7 1378 aa26.94■■□□□ 1.9
PTCD3-217ENST00000488801 C19orf44Q9H6X5 657 aa26.93■■□□□ 1.9
PTCD3-217ENST00000488801 PLEKHH1Q9ULM0 1364 aa26.93■■□□□ 1.9
PTCD3-217ENST00000488801 RGPD8O14715 1765 aaPredicted RBP26.92■■□□□ 1.9
PTCD3-217ENST00000488801 MST1RQ04912 1400 aa26.91■■□□□ 1.9
PTCD3-217ENST00000488801 NHSL1Q5SYE7 1610 aa26.9■■□□□ 1.9
PTCD3-217ENST00000488801 RALGAPBQ86X10 1494 aa26.9■■□□□ 1.9
PTCD3-217ENST00000488801 QRICH2Q9H0J4 1663 aa26.89■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms