RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ACIN1Q9UKV3 1341 aaKnown RBP21.91■■□□□ 1.1
USP4-212ENST00000486549 CPS1P31327 1500 aa21.9■■□□□ 1.1
USP4-212ENST00000486549 KIF1BO60333 1816 aa21.9■■□□□ 1.1
USP4-212ENST00000486549 RIMS2Q9UQ26 1411 aa21.89■■□□□ 1.09
USP4-212ENST00000486549 ZFYVE9O95405 1425 aa21.87■■□□□ 1.09
USP4-212ENST00000486549 SENP3Q9H4L4 574 aaPredicted RBP21.86■■□□□ 1.09
USP4-212ENST00000486549 PPP1R15AO75807 674 aaPredicted RBP21.85■■□□□ 1.09
USP4-212ENST00000486549 UBAP1LF5GYI3 381 aa21.84■■□□□ 1.09
USP4-212ENST00000486549 ZNF326Q5BKZ1 582 aaKnown RBP21.84■■□□□ 1.09
USP4-212ENST00000486549 NUTM2DQ5VT03 806 aaPredicted RBP21.84■■□□□ 1.09
USP4-212ENST00000486549 BCANQ96GW7 911 aa21.83■■□□□ 1.09
USP4-212ENST00000486549 HDGFP51858 240 aaKnown RBP21.82■■□□□ 1.08
USP4-212ENST00000486549 TOM1O60784 492 aa21.81■■□□□ 1.08
USP4-212ENST00000486549 CCDC144AA2RUR9 1427 aa21.8■■□□□ 1.08
USP4-212ENST00000486549 HRCP23327 699 aa21.8■■□□□ 1.08
USP4-212ENST00000486549 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.8■■□□□ 1.08
USP4-212ENST00000486549 PLEKHG1Q9ULL1 1385 aa21.78■■□□□ 1.08
USP4-212ENST00000486549 STRCP1A6NGW2 1772 aa21.78■■□□□ 1.08
USP4-212ENST00000486549 SLC26A8Q96RN1 970 aa21.77■■□□□ 1.08
USP4-212ENST00000486549 NEXMIFQ5QGS0 1516 aa21.76■■□□□ 1.07
USP4-212ENST00000486549 TRIM26Q12899 539 aaPredicted RBP21.76■■□□□ 1.07
USP4-212ENST00000486549 PPLO60437 1756 aa21.71■■□□□ 1.07
USP4-212ENST00000486549 RGL3Q3MIN7 710 aa21.69■■□□□ 1.06
USP4-212ENST00000486549 ADAMTS13Q76LX8 1427 aa21.69■■□□□ 1.06
USP4-212ENST00000486549 DIP2AQ14689 1571 aa21.69■■□□□ 1.06
USP4-212ENST00000486549 NRXN3Q9Y4C0 1643 aa21.69■■□□□ 1.06
USP4-212ENST00000486549 SCAF1Q9H7N4 1312 aaKnown RBP21.68■■□□□ 1.06
USP4-212ENST00000486549 SPATA31E1Q6ZUB1 1445 aa21.68■■□□□ 1.06
USP4-212ENST00000486549 SETBP1Q9Y6X0 1596 aa21.67■■□□□ 1.06
USP4-212ENST00000486549 ANKRD30BQ9BXX2 1392 aa21.67■■□□□ 1.06
USP4-212ENST00000486549 LRRC7Q96NW7 1537 aa21.66■■□□□ 1.06
USP4-212ENST00000486549 RPGRIP1LQ68CZ1 1315 aa21.66■■□□□ 1.06
USP4-212ENST00000486549 CHD2O14647 1828 aaKnown RBP21.66■■□□□ 1.06
USP4-212ENST00000486549 IFT172Q9UG01 1749 aa21.66■■□□□ 1.06
USP4-212ENST00000486549 NWD1Q149M9 1564 aa21.65■■□□□ 1.06
USP4-212ENST00000486549 KCNA6P17658 529 aa21.65■■□□□ 1.06
USP4-212ENST00000486549 PIP4K2BP78356 416 aa21.65■■□□□ 1.06
USP4-212ENST00000486549 TBX22Q9Y458 520 aa21.64■■□□□ 1.05
USP4-212ENST00000486549 VGFO15240 615 aaPredicted RBP21.63■■□□□ 1.05
USP4-212ENST00000486549 XIRP1Q702N8 1843 aaKnown RBP21.61■■□□□ 1.05
USP4-212ENST00000486549 NKTRP30414 1462 aaKnown RBP21.6■■□□□ 1.05
USP4-212ENST00000486549 DISP3Q9P2K9 1392 aa21.59■■□□□ 1.05
USP4-212ENST00000486549 PROSER2Q86WR7 435 aaPredicted RBP21.57■■□□□ 1.04
USP4-212ENST00000486549 RBM33Q96EV2 1170 aaKnown RBP21.57■■□□□ 1.04
USP4-212ENST00000486549 PIK3R4Q99570 1358 aa21.57■■□□□ 1.04
USP4-212ENST00000486549 SETD1AO15047 1707 aaKnown RBP21.57■■□□□ 1.04
USP4-212ENST00000486549 ADGRF5Q8IZF2 1346 aa21.56■■□□□ 1.04
USP4-212ENST00000486549 PTPRUQ92729 1446 aa21.56■■□□□ 1.04
USP4-212ENST00000486549 ALKQ9UM73 1620 aa21.56■■□□□ 1.04
USP4-212ENST00000486549 METP08581 1390 aa21.56■■□□□ 1.04
USP4-212ENST00000486549 TMEM94Q12767 1356 aa21.56■■□□□ 1.04
USP4-212ENST00000486549 XRN1Q8IZH2 1706 aaKnown RBP21.55■■□□□ 1.04
USP4-212ENST00000486549 HSPA1LP34931 641 aa21.54■■□□□ 1.04
USP4-212ENST00000486549 AMOTL2Q9Y2J4 779 aa21.53■■□□□ 1.04
USP4-212ENST00000486549 MYOM2P54296 1465 aa21.52■■□□□ 1.03
USP4-212ENST00000486549 DHX57Q6P158 1386 aaKnown RBP21.51■■□□□ 1.03
USP4-212ENST00000486549 PIK3C2GO75747 1445 aa21.5■■□□□ 1.03
USP4-212ENST00000486549 MSH6P52701 1360 aa21.48■■□□□ 1.03
USP4-212ENST00000486549 NCOA3Q9Y6Q9 1424 aa21.48■■□□□ 1.03
USP4-212ENST00000486549 C14orf37Q86TY3 774 aa21.47■■□□□ 1.03
USP4-212ENST00000486549 DCAF11Q8TEB1 546 aa21.47■■□□□ 1.03
USP4-212ENST00000486549 PCGF6Q9BYE7 350 aa21.47■■□□□ 1.03
USP4-212ENST00000486549 KDM2AQ9Y2K7 1162 aa21.47■■□□□ 1.03
USP4-212ENST00000486549 NRXN1Q9ULB1 1477 aa21.46■■□□□ 1.03
USP4-212ENST00000486549 FAM135BQ49AJ0 1406 aa21.45■■□□□ 1.02
USP4-212ENST00000486549 ASXL1Q8IXJ9 1541 aa21.45■■□□□ 1.02
USP4-212ENST00000486549 LAMC1P11047 1609 aa21.44■■□□□ 1.02
USP4-212ENST00000486549 SIN3AQ96ST3 1273 aa21.43■■□□□ 1.02
USP4-212ENST00000486549 NEUROD1Q13562 356 aa21.41■■□□□ 1.02
USP4-212ENST00000486549 CFAP70Q5T0N1 1121 aa21.41■■□□□ 1.02
USP4-212ENST00000486549 TMEM132EQ6IEE7 984 aa21.41■■□□□ 1.02
USP4-212ENST00000486549 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.41■■□□□ 1.02
USP4-212ENST00000486549 PTCH1Q13635 1447 aa21.4■■□□□ 1.02
USP4-212ENST00000486549 STK26Q9P289 416 aa21.4■■□□□ 1.02
USP4-212ENST00000486549 ROBO2Q9HCK4 1378 aa21.39■■□□□ 1.02
USP4-212ENST00000486549 C14orf93Q9H972 538 aaKnown RBP21.39■■□□□ 1.01
USP4-212ENST00000486549 KNDC1Q76NI1 1749 aa21.38■■□□□ 1.01
USP4-212ENST00000486549 NALCNQ8IZF0 1738 aa21.38■■□□□ 1.01
USP4-212ENST00000486549 CADPS2Q86UW7 1296 aa21.38■■□□□ 1.01
USP4-212ENST00000486549 C19orf44Q9H6X5 657 aa21.38■■□□□ 1.01
USP4-212ENST00000486549 SLAIN2Q9P270 581 aa21.38■■□□□ 1.01
USP4-212ENST00000486549 LRPPRCP42704 1394 aaKnown RBP21.36■■□□□ 1.01
USP4-212ENST00000486549 ATF3P18847 181 aa21.36■■□□□ 1.01
USP4-212ENST00000486549 PRAG1Q86YV5 1406 aa21.36■■□□□ 1.01
USP4-212ENST00000486549 YTHDC2Q9H6S0 1430 aaKnown RBP21.36■■□□□ 1.01
USP4-212ENST00000486549 STAC3Q96MF2 364 aa21.35■■□□□ 1.01
USP4-212ENST00000486549 ADGRL3Q9HAR2 1447 aa21.34■■□□□ 1.01
USP4-212ENST00000486549 TECPR2O15040 1411 aa21.33■■□□□ 1.01
USP4-212ENST00000486549 PHF23Q9BUL5 403 aaPredicted RBP21.33■■□□□ 1.01
USP4-212ENST00000486549 ROBO1Q9Y6N7 1651 aa21.33■■□□□ 1
USP4-212ENST00000486549 MED1Q15648 1581 aaPredicted RBP21.32■■□□□ 1
USP4-212ENST00000486549 L3MBTL2Q969R5 705 aa21.32■■□□□ 1
USP4-212ENST00000486549 ADGRB1O14514 1584 aa21.31■■□□□ 1
USP4-212ENST00000486549 ILDR2Q71H61 639 aa21.31■■□□□ 1
USP4-212ENST00000486549 ABCC11Q96J66 1382 aa21.31■■□□□ 1
USP4-212ENST00000486549 DCCP43146 1447 aa21.3■■□□□ 1
USP4-212ENST00000486549 PLEKHH1Q9ULM0 1364 aa21.29■■□□□ 1
USP4-212ENST00000486549 WAPLQ7Z5K2 1190 aa21.29■■□□□ 1
USP4-212ENST00000486549 SOCS7O14512 581 aa21.28■■□□□ 1
USP4-212ENST00000486549 KIAA1210Q9ULL0 1709 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 228.5 ms