RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 NISCHQ9Y2I1 1504 aa35.78■■■■□ 3.32
USP4-212ENST00000486549 CCDC180Q9P1Z9 1646 aa31.82■■■□□ 2.69
USP4-212ENST00000486549 ABCC9O60706 1549 aa31.2■■■□□ 2.59
USP4-212ENST00000486549 DCAF8L2P0C7V8 631 aa29.94■■■□□ 2.38
USP4-212ENST00000486549 RB1CC1Q8TDY2 1594 aa29.94■■■□□ 2.38
USP4-212ENST00000486549 NACADO15069 1562 aa29.88■■■□□ 2.37
USP4-212ENST00000486549 ZCCHC6Q5VYS8 1495 aaKnown RBP29.81■■■□□ 2.36
USP4-212ENST00000486549 MYO15BQ96JP2 1530 aa29.65■■■□□ 2.34
USP4-212ENST00000486549 DCAF1Q9Y4B6 1507 aa29.55■■■□□ 2.32
USP4-212ENST00000486549 UNC13AQ9UPW8 1703 aa29.33■■■□□ 2.29
USP4-212ENST00000486549 SCRIBQ14160 1630 aa29.1■■■□□ 2.25
USP4-212ENST00000486549 PABPN1Q86U42 306 aaKnown RBP eCLIP29.1■■■□□ 2.25
USP4-212ENST00000486549 BICRAQ9NZM4 1560 aa29.03■■■□□ 2.24
USP4-212ENST00000486549 DNAJC5BQ9UF47 199 aa28.93■■■□□ 2.22
USP4-212ENST00000486549 SHROOM4Q9ULL8 1493 aa28.78■■■□□ 2.2
USP4-212ENST00000486549 EIF4G1Q04637 1599 aaKnown RBP28.27■■■□□ 2.12
USP4-212ENST00000486549 CC2D2AQ9P2K1 1620 aa28.21■■■□□ 2.11
USP4-212ENST00000486549 CECR2Q9BXF3 1484 aa28.14■■■□□ 2.09
USP4-212ENST00000486549 SMARCA4P51532 1647 aa27.8■■■□□ 2.04
USP4-212ENST00000486549 BAZ1AQ9NRL2 1556 aaPredicted RBP27.73■■■□□ 2.03
USP4-212ENST00000486549 MROH2BQ7Z745 1585 aa27.6■■■□□ 2.01
USP4-212ENST00000486549 ATAD2BQ9ULI0 1458 aa27.59■■■□□ 2.01
USP4-212ENST00000486549 SMARCA2P51531 1590 aa27.57■■■□□ 2
USP4-212ENST00000486549 NCAPD3P42695 1498 aa27.54■■■□□ 2
USP4-212ENST00000486549 PEG3Q9GZU2 1588 aa27.46■■□□□ 1.99
USP4-212ENST00000486549 HMGXB3Q12766 1538 aa27.45■■□□□ 1.98
USP4-212ENST00000486549 BAZ1BQ9UIG0 1483 aaKnown RBP27.4■■□□□ 1.98
USP4-212ENST00000486549 WIZO95785 1651 aa27.34■■□□□ 1.97
USP4-212ENST00000486549 RSF1Q96T23 1441 aaPredicted RBP27.26■■□□□ 1.95
USP4-212ENST00000486549 ERCC6Q03468 1493 aa27.03■■□□□ 1.92
USP4-212ENST00000486549 TOP2AP11388 1531 aaKnown RBP27.01■■□□□ 1.91
USP4-212ENST00000486549 NESP48681 1621 aa26.96■■□□□ 1.91
USP4-212ENST00000486549 CUX2O14529 1486 aa26.89■■□□□ 1.9
USP4-212ENST00000486549 LAMC3Q9Y6N6 1575 aa26.86■■□□□ 1.89
USP4-212ENST00000486549 CADPSQ9ULU8 1353 aa26.75■■□□□ 1.87
USP4-212ENST00000486549 PDS5BQ9NTI5 1447 aa26.74■■□□□ 1.87
USP4-212ENST00000486549 CCDC88BA6NC98 1476 aa26.68■■□□□ 1.86
USP4-212ENST00000486549 KIF21AQ7Z4S6 1674 aa26.68■■□□□ 1.86
USP4-212ENST00000486549 SUPT5HO00267 1087 aaKnown RBP26.66■■□□□ 1.86
USP4-212ENST00000486549 CFTRP13569 1480 aa26.6■■□□□ 1.85
USP4-212ENST00000486549 THOC2Q8NI27 1593 aaKnown RBP26.54■■□□□ 1.84
USP4-212ENST00000486549 DNAJC5Q9H3Z4 198 aa26.51■■□□□ 1.83
USP4-212ENST00000486549 PRDM2Q13029 1718 aa26.51■■□□□ 1.83
USP4-212ENST00000486549 FANCD2Q9BXW9 1451 aa26.49■■□□□ 1.83
USP4-212ENST00000486549 CEP164Q9UPV0 1460 aa26.46■■□□□ 1.83
USP4-212ENST00000486549 MRC2Q9UBG0 1479 aa26.42■■□□□ 1.82
USP4-212ENST00000486549 WDR62O43379 1518 aa26.32■■□□□ 1.8
USP4-212ENST00000486549 URB2Q14146 1524 aaKnown RBP26.23■■□□□ 1.79
USP4-212ENST00000486549 TOPBP1Q92547 1522 aa26.07■■□□□ 1.76
USP4-212ENST00000486549 DNMBPQ6XZF7 1577 aa26.06■■□□□ 1.76
USP4-212ENST00000486549 ABCC8Q09428 1581 aa26.03■■□□□ 1.76
USP4-212ENST00000486549 CUX1P39880 1505 aa25.89■■□□□ 1.74
USP4-212ENST00000486549 IFT140Q96RY7 1462 aa25.88■■□□□ 1.73
USP4-212ENST00000486549 POLA1P09884 1462 aaPredicted RBP25.85■■□□□ 1.73
USP4-212ENST00000486549 FGD5Q6ZNL6 1462 aa25.81■■□□□ 1.72
USP4-212ENST00000486549 ZNF608Q9ULD9 1512 aaPredicted RBP25.79■■□□□ 1.72
USP4-212ENST00000486549 TARBP1Q13395 1621 aaKnown RBP25.79■■□□□ 1.72
USP4-212ENST00000486549 OSCARQ8IYS5 282 aa25.76■■□□□ 1.71
USP4-212ENST00000486549 RAD54L2Q9Y4B4 1467 aa25.76■■□□□ 1.71
USP4-212ENST00000486549 SOGA1O94964 1423 aa25.73■■□□□ 1.71
USP4-212ENST00000486549 EIF4G3O43432 1585 aaKnown RBP25.73■■□□□ 1.71
USP4-212ENST00000486549 WRNQ14191 1432 aaPredicted RBP eCLIP25.72■■□□□ 1.71
USP4-212ENST00000486549 SYNJ1O43426 1573 aa25.7■■□□□ 1.71
USP4-212ENST00000486549 BIVM-ERCC5R4GMW8 1640 aa25.69■■□□□ 1.7
USP4-212ENST00000486549 TOP2BQ02880 1626 aa25.67■■□□□ 1.7
USP4-212ENST00000486549 AQRO60306 1485 aaKnown RBP eCLIP25.65■■□□□ 1.71e-6■■■■■ 34.2
USP4-212ENST00000486549 WDR97A6NE52 1622 aa25.62■■□□□ 1.69
USP4-212ENST00000486549 TDRD9Q8NDG6 1382 aaKnown RBP25.59■■□□□ 1.69
USP4-212ENST00000486549 ABCA10Q8WWZ4 1543 aa25.53■■□□□ 1.68
USP4-212ENST00000486549 PBRM1Q86U86 1689 aa25.46■■□□□ 1.67
USP4-212ENST00000486549 ABCA5Q8WWZ7 1642 aa25.46■■□□□ 1.67
USP4-212ENST00000486549 GAPVD1Q14C86 1478 aa25.45■■□□□ 1.66
USP4-212ENST00000486549 GRIN2BQ13224 1484 aa25.43■■□□□ 1.66
USP4-212ENST00000486549 TRIM41Q8WV44 630 aa25.43■■□□□ 1.66
USP4-212ENST00000486549 CHD1O14646 1710 aa25.43■■□□□ 1.66
USP4-212ENST00000486549 SNAPC4Q5SXM2 1469 aa25.42■■□□□ 1.66
USP4-212ENST00000486549 FBLN2P98095 1184 aa25.36■■□□□ 1.65
USP4-212ENST00000486549 MAGI1Q96QZ7 1491 aaPredicted RBP25.35■■□□□ 1.65
USP4-212ENST00000486549 CHMP7Q8WUX9 453 aaPredicted RBP25.28■■□□□ 1.64
USP4-212ENST00000486549 SYNJ2O15056 1496 aa25.26■■□□□ 1.63
USP4-212ENST00000486549 RIMBP3CA6NJZ7 1639 aa25.23■■□□□ 1.63
USP4-212ENST00000486549 RIMBP3BA6NNM3 1639 aa25.23■■□□□ 1.63
USP4-212ENST00000486549 RIMBP3Q9UFD9 1639 aa25.23■■□□□ 1.63
USP4-212ENST00000486549 ADAMTS12P58397 1594 aa25.22■■□□□ 1.63
USP4-212ENST00000486549 ERICH3Q5RHP9 1530 aa25.22■■□□□ 1.63
USP4-212ENST00000486549 ARHGEF11O15085 1522 aa25.22■■□□□ 1.63
USP4-212ENST00000486549 KIF27Q86VH2 1401 aa25.18■■□□□ 1.62
USP4-212ENST00000486549 FHAD1B1AJZ9 1412 aa25.13■■□□□ 1.61
USP4-212ENST00000486549 GRIN2AQ12879 1464 aa25.12■■□□□ 1.61
USP4-212ENST00000486549 CLASP1Q7Z460 1538 aa25.08■■□□□ 1.61
USP4-212ENST00000486549 CYB5RLQ6IPT4 315 aa25.06■■□□□ 1.6
USP4-212ENST00000486549 IGF1RP08069 1367 aa25.04■■□□□ 1.6
USP4-212ENST00000486549 CUL7Q14999 1698 aa25.04■■□□□ 1.6
USP4-212ENST00000486549 CEP170Q5SW79 1584 aa25.01■■□□□ 1.59
USP4-212ENST00000486549 RUSC2Q8N2Y8 1516 aa24.99■■□□□ 1.59
USP4-212ENST00000486549 NUP160Q12769 1436 aa24.97■■□□□ 1.59
USP4-212ENST00000486549 ARAP1Q96P48 1450 aa24.96■■□□□ 1.59
USP4-212ENST00000486549 CARMIL1Q5VZK9 1371 aa24.92■■□□□ 1.58
USP4-212ENST00000486549 CHIC1Q5VXU3 224 aa24.84■■□□□ 1.57
USP4-212ENST00000486549 SHROOM2Q13796 1616 aa24.81■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms