RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 ANKRD50Q9ULJ7 1429 aa8.9□□□□□ -0.98
CUX1-208ENST00000485792 KIF3BO15066 747 aa8.9□□□□□ -0.98
CUX1-208ENST00000485792 TSPY4P0CV99 314 aa8.9□□□□□ -0.98
CUX1-208ENST00000485792 TSPY10P0CW01 314 aa8.9□□□□□ -0.98
CUX1-208ENST00000485792 RRP7BPQ9NSQ0 103 aa8.9□□□□□ -0.98
CUX1-208ENST00000485792 SPHKAPQ2M3C7 1700 aa8.9□□□□□ -0.98
CUX1-208ENST00000485792 A2ML1A8K2U0 1454 aa8.89□□□□□ -0.99
CUX1-208ENST00000485792 NOS1P29475 1434 aa8.89□□□□□ -0.99
CUX1-208ENST00000485792 ARHGAP31Q2M1Z3 1444 aa8.89□□□□□ -0.99
CUX1-208ENST00000485792 KDM5AP29375 1690 aaKnown RBP8.89□□□□□ -0.99
CUX1-208ENST00000485792 GGT6Q6P531 493 aa8.89□□□□□ -0.99
CUX1-208ENST00000485792 TMEM131LA2VDJ0 1609 aa8.89□□□□□ -0.99
CUX1-208ENST00000485792 CLTCL1P53675 1640 aa8.89□□□□□ -0.99
CUX1-208ENST00000485792 ALKQ9UM73 1620 aa8.89□□□□□ -0.99
CUX1-208ENST00000485792 XIRP1Q702N8 1843 aaKnown RBP8.89□□□□□ -0.99
CUX1-208ENST00000485792 UHRF1BP1Q6BDS2 1440 aa8.88□□□□□ -0.99
CUX1-208ENST00000485792 PLA2R1Q13018 1463 aa8.88□□□□□ -0.99
CUX1-208ENST00000485792 HFM1A2PYH4 1435 aa8.88□□□□□ -0.99
CUX1-208ENST00000485792 ANKRD30AQ9BXX3 1397 aa8.87□□□□□ -0.99
CUX1-208ENST00000485792 NRXN3Q9Y4C0 1643 aa8.87□□□□□ -0.99
CUX1-208ENST00000485792 ADGRB3O60242 1522 aa8.87□□□□□ -0.99
CUX1-208ENST00000485792 VASPP50552 380 aaPredicted RBP8.87□□□□□ -0.99
CUX1-208ENST00000485792 FAM50AQ14320 339 aaKnown RBP8.87□□□□□ -0.99
CUX1-208ENST00000485792 MYT1LQ9UL68 1186 aa8.87□□□□□ -0.99
CUX1-208ENST00000485792 ARHGAP23Q9P227 1491 aa8.87□□□□□ -0.99
CUX1-208ENST00000485792 IQGAP1P46940 1657 aa8.86□□□□□ -0.99
CUX1-208ENST00000485792 TNRQ92752 1358 aa8.86□□□□□ -0.99
CUX1-208ENST00000485792 SETD1AO15047 1707 aaKnown RBP8.85□□□□□ -0.99
CUX1-208ENST00000485792 SLIT1O75093 1534 aa8.85□□□□□ -0.99
CUX1-208ENST00000485792 NLRP1Q9C000 1473 aa8.84□□□□□ -0.99
CUX1-208ENST00000485792 PRKAR2AP13861 404 aaKnown RBP8.84□□□□□ -0.99
CUX1-208ENST00000485792 IFT172Q9UG01 1749 aa8.84□□□□□ -0.99
CUX1-208ENST00000485792 TRPM2O94759 1503 aa8.83□□□□□ -1
CUX1-208ENST00000485792 ZFYVE9O95405 1425 aa8.82□□□□□ -1
CUX1-208ENST00000485792 MED14O60244 1454 aa8.82□□□□□ -1
CUX1-208ENST00000485792 RPRD2Q5VT52 1461 aaKnown RBP8.82□□□□□ -1
CUX1-208ENST00000485792 PTPRTO14522 1441 aa8.8□□□□□ -1
CUX1-208ENST00000485792 NEXMIFQ5QGS0 1516 aa8.8□□□□□ -1
CUX1-208ENST00000485792 ITGAEP38570 1179 aa8.8□□□□□ -1
CUX1-208ENST00000485792 WASHC2CQ9Y4E1 1318 aa8.8□□□□□ -1
CUX1-208ENST00000485792 PPLO60437 1756 aa8.79□□□□□ -1
CUX1-208ENST00000485792 NWD1Q149M9 1564 aa8.79□□□□□ -1
CUX1-208ENST00000485792 NCKAP5LQ9HCH0 1330 aa8.79□□□□□ -1
CUX1-208ENST00000485792 CHADLQ6NUI6 762 aa8.78□□□□□ -1
CUX1-208ENST00000485792 ASXL1Q8IXJ9 1541 aa8.77□□□□□ -1.01
CUX1-208ENST00000485792 ESF1Q9H501 851 aaKnown RBP8.77□□□□□ -1.01
CUX1-208ENST00000485792 XRN1Q8IZH2 1706 aaKnown RBP8.77□□□□□ -1.01
CUX1-208ENST00000485792 SCAF11Q99590 1463 aaKnown RBP8.77□□□□□ -1.01
CUX1-208ENST00000485792 ZNF335Q9H4Z2 1342 aaPredicted RBP8.76□□□□□ -1.01
CUX1-208ENST00000485792 LTKP29376 864 aa8.75□□□□□ -1.01
CUX1-208ENST00000485792 CHD2O14647 1828 aaKnown RBP8.75□□□□□ -1.01
CUX1-208ENST00000485792 KIF1BO60333 1816 aa8.75□□□□□ -1.01
CUX1-208ENST00000485792 NUP155O75694 1391 aa8.74□□□□□ -1.01
CUX1-208ENST00000485792 NPHP4O75161 1426 aaPredicted RBP8.74□□□□□ -1.01
CUX1-208ENST00000485792 ADAMTS13Q76LX8 1427 aa8.74□□□□□ -1.01
CUX1-208ENST00000485792 IDI1Q13907 227 aa8.74□□□□□ -1.01
CUX1-208ENST00000485792 IFNLR1Q8IU57 520 aaPredicted RBP8.74□□□□□ -1.01
CUX1-208ENST00000485792 KANK1Q14678 1352 aa8.73□□□□□ -1.01
CUX1-208ENST00000485792 RAB3GAP2Q9H2M9 1393 aa8.73□□□□□ -1.01
CUX1-208ENST00000485792 TMEM2Q9UHN6 1383 aa8.73□□□□□ -1.01
CUX1-208ENST00000485792 SETBP1Q9Y6X0 1596 aa8.73□□□□□ -1.01
CUX1-208ENST00000485792 PLCD3Q8N3E9 789 aa8.73□□□□□ -1.01
CUX1-208ENST00000485792 MIER1Q8N108 512 aa8.72□□□□□ -1.01
CUX1-208ENST00000485792 SPATA31E1Q6ZUB1 1445 aa8.71□□□□□ -1.01
CUX1-208ENST00000485792 PTPRUQ92729 1446 aa8.71□□□□□ -1.01
CUX1-208ENST00000485792 LRRC7Q96NW7 1537 aa8.71□□□□□ -1.01
CUX1-208ENST00000485792 HAX1O00165 279 aa8.71□□□□□ -1.02
CUX1-208ENST00000485792 PKD2Q13563 968 aa8.71□□□□□ -1.02
CUX1-208ENST00000485792 CREBZFQ9NS37 354 aa8.71□□□□□ -1.02
CUX1-208ENST00000485792 NALCNQ8IZF0 1738 aa8.71□□□□□ -1.02
CUX1-208ENST00000485792 FARP1Q9Y4F1 1045 aaPredicted RBP8.7□□□□□ -1.02
CUX1-208ENST00000485792 RIMS2Q9UQ26 1411 aa8.7□□□□□ -1.02
CUX1-208ENST00000485792 AMER1Q5JTC6 1135 aaPredicted RBP8.69□□□□□ -1.02
CUX1-208ENST00000485792 THEMISQ8N1K5 641 aaPredicted RBP8.69□□□□□ -1.02
CUX1-208ENST00000485792 SETD5Q9C0A6 1442 aa8.69□□□□□ -1.02
CUX1-208ENST00000485792 DIP2AQ14689 1571 aa8.69□□□□□ -1.02
CUX1-208ENST00000485792 PLEKHG5O94827 1062 aa8.68□□□□□ -1.02
CUX1-208ENST00000485792 ILDR1Q86SU0 546 aaPredicted RBP8.68□□□□□ -1.02
CUX1-208ENST00000485792 SLC52A1Q9NWF4 448 aa8.68□□□□□ -1.02
CUX1-208ENST00000485792 IQSEC2Q5JU85 1478 aa8.68□□□□□ -1.02
CUX1-208ENST00000485792 CPS1P31327 1500 aa8.67□□□□□ -1.02
CUX1-208ENST00000485792 RTN4Q9NQC3 1192 aaKnown RBP8.67□□□□□ -1.02
CUX1-208ENST00000485792 NRXN1Q9ULB1 1477 aa8.66□□□□□ -1.02
CUX1-208ENST00000485792 PLEKHG1Q9ULL1 1385 aa8.66□□□□□ -1.02
CUX1-208ENST00000485792 KNDC1Q76NI1 1749 aa8.66□□□□□ -1.02
CUX1-208ENST00000485792 KLHL34Q8N239 644 aa8.65□□□□□ -1.02
CUX1-208ENST00000485792 ACIN1Q9UKV3 1341 aaKnown RBP8.64□□□□□ -1.03
CUX1-208ENST00000485792 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.64□□□□□ -1.03
CUX1-208ENST00000485792 HRCP23327 699 aa8.64□□□□□ -1.03
CUX1-208ENST00000485792 NUTM2DQ5VT03 806 aaPredicted RBP8.64□□□□□ -1.03
CUX1-208ENST00000485792 CERKQ8TCT0 537 aa8.64□□□□□ -1.03
CUX1-208ENST00000485792 ZBTB47Q9UFB7 747 aaPredicted RBP8.64□□□□□ -1.03
CUX1-208ENST00000485792 ADGRB1O14514 1584 aa8.64□□□□□ -1.03
CUX1-208ENST00000485792 NKTRP30414 1462 aaKnown RBP8.64□□□□□ -1.03
CUX1-208ENST00000485792 PRAG1Q86YV5 1406 aa8.63□□□□□ -1.03
CUX1-208ENST00000485792 ANKRD30BQ9BXX2 1392 aa8.63□□□□□ -1.03
CUX1-208ENST00000485792 ANKLE2Q86XL3 938 aa8.63□□□□□ -1.03
CUX1-208ENST00000485792 SPOCK2Q92563 424 aa8.63□□□□□ -1.03
CUX1-208ENST00000485792 METP08581 1390 aa8.62□□□□□ -1.03
CUX1-208ENST00000485792 C19orf67A6NJJ6 358 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms