RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 IQGAP1P46940 1657 aa28.96■■■□□ 2.23
LIME1-205ENST00000480139 SPATA31E1Q6ZUB1 1445 aa28.95■■■□□ 2.23
LIME1-205ENST00000480139 LTKP29376 864 aa28.94■■■□□ 2.22
LIME1-205ENST00000480139 HDGFP51858 240 aaKnown RBP28.94■■■□□ 2.22
LIME1-205ENST00000480139 TXNDC2Q86VQ3 553 aa28.94■■■□□ 2.22
LIME1-205ENST00000480139 NPHP4O75161 1426 aaPredicted RBP28.94■■■□□ 2.22
LIME1-205ENST00000480139 NEXMIFQ5QGS0 1516 aa28.93■■■□□ 2.22
LIME1-205ENST00000480139 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.92■■■□□ 2.22
LIME1-205ENST00000480139 PPLO60437 1756 aa28.89■■■□□ 2.22
LIME1-205ENST00000480139 RPGRIP1LQ68CZ1 1315 aa28.89■■■□□ 2.21
LIME1-205ENST00000480139 ZNF326Q5BKZ1 582 aaKnown RBP28.88■■■□□ 2.21
LIME1-205ENST00000480139 IFT172Q9UG01 1749 aa28.88■■■□□ 2.21
LIME1-205ENST00000480139 PLEKHG1Q9ULL1 1385 aa28.87■■■□□ 2.21
LIME1-205ENST00000480139 PPP1R15AO75807 674 aaPredicted RBP28.83■■■□□ 2.21
LIME1-205ENST00000480139 SETBP1Q9Y6X0 1596 aa28.8■■■□□ 2.2
LIME1-205ENST00000480139 DIP2AQ14689 1571 aa28.79■■■□□ 2.2
LIME1-205ENST00000480139 NRXN3Q9Y4C0 1643 aa28.77■■■□□ 2.2
LIME1-205ENST00000480139 VGFO15240 615 aaPredicted RBP28.77■■■□□ 2.2
LIME1-205ENST00000480139 RGL3Q3MIN7 710 aa28.77■■■□□ 2.2
LIME1-205ENST00000480139 NUTM2DQ5VT03 806 aaPredicted RBP28.75■■■□□ 2.19
LIME1-205ENST00000480139 MYOM2P54296 1465 aa28.74■■■□□ 2.19
LIME1-205ENST00000480139 ADAMTS13Q76LX8 1427 aa28.73■■■□□ 2.19
LIME1-205ENST00000480139 TBX22Q9Y458 520 aa28.69■■■□□ 2.18
LIME1-205ENST00000480139 NRXN1Q9ULB1 1477 aa28.69■■■□□ 2.18
LIME1-205ENST00000480139 LTBP4Q8N2S1 1624 aa28.69■■■□□ 2.18
LIME1-205ENST00000480139 BCANQ96GW7 911 aa28.68■■■□□ 2.18
LIME1-205ENST00000480139 STAC3Q96MF2 364 aa28.68■■■□□ 2.18
LIME1-205ENST00000480139 SLC26A8Q96RN1 970 aa28.67■■■□□ 2.18
LIME1-205ENST00000480139 SETD1AO15047 1707 aaKnown RBP28.66■■■□□ 2.18
LIME1-205ENST00000480139 SIN3AQ96ST3 1273 aa28.66■■■□□ 2.18
LIME1-205ENST00000480139 PIK3C2GO75747 1445 aa28.66■■■□□ 2.18
LIME1-205ENST00000480139 ZNF335Q9H4Z2 1342 aaPredicted RBP28.66■■■□□ 2.18
LIME1-205ENST00000480139 CLSPNQ9HAW4 1339 aa28.66■■■□□ 2.18
LIME1-205ENST00000480139 PIK3R4Q99570 1358 aa28.65■■■□□ 2.18
LIME1-205ENST00000480139 NWD1Q149M9 1564 aa28.65■■■□□ 2.18
LIME1-205ENST00000480139 ADGRF5Q8IZF2 1346 aa28.65■■■□□ 2.18
LIME1-205ENST00000480139 CHD2O14647 1828 aaKnown RBP28.64■■■□□ 2.18
LIME1-205ENST00000480139 STRCP1A6NGW2 1772 aa28.64■■■□□ 2.18
LIME1-205ENST00000480139 CPS1P31327 1500 aa28.64■■■□□ 2.17
LIME1-205ENST00000480139 ALKQ9UM73 1620 aa28.63■■■□□ 2.17
LIME1-205ENST00000480139 LAMC1P11047 1609 aa28.61■■■□□ 2.17
LIME1-205ENST00000480139 DCAF11Q8TEB1 546 aa28.6■■■□□ 2.17
LIME1-205ENST00000480139 NEUROD1Q13562 356 aa28.58■■■□□ 2.17
LIME1-205ENST00000480139 SENP3Q9H4L4 574 aaPredicted RBP28.58■■■□□ 2.17
LIME1-205ENST00000480139 NKTRP30414 1462 aaKnown RBP28.57■■■□□ 2.16
LIME1-205ENST00000480139 KCNA6P17658 529 aa28.56■■■□□ 2.16
LIME1-205ENST00000480139 XRN1Q8IZH2 1706 aaKnown RBP28.55■■■□□ 2.16
LIME1-205ENST00000480139 METP08581 1390 aa28.54■■■□□ 2.16
LIME1-205ENST00000480139 IQSEC2Q5JU85 1478 aa28.53■■■□□ 2.16
LIME1-205ENST00000480139 L3MBTL2Q969R5 705 aa28.52■■■□□ 2.16
LIME1-205ENST00000480139 PTPRUQ92729 1446 aa28.52■■■□□ 2.16
LIME1-205ENST00000480139 KDM2AQ9Y2K7 1162 aa28.51■■■□□ 2.15
LIME1-205ENST00000480139 KIAA1210Q9ULL0 1709 aa28.5■■■□□ 2.15
LIME1-205ENST00000480139 CCER1Q8TC90 406 aaPredicted RBP28.5■■■□□ 2.15
LIME1-205ENST00000480139 C14orf93Q9H972 538 aaKnown RBP28.5■■■□□ 2.15
LIME1-205ENST00000480139 PRAG1Q86YV5 1406 aa28.5■■■□□ 2.15
LIME1-205ENST00000480139 ASXL1Q8IXJ9 1541 aa28.49■■■□□ 2.15
LIME1-205ENST00000480139 LRRC7Q96NW7 1537 aa28.49■■■□□ 2.15
LIME1-205ENST00000480139 TONSLQ96HA7 1378 aa28.49■■■□□ 2.15
LIME1-205ENST00000480139 CERKQ8TCT0 537 aa28.47■■■□□ 2.15
LIME1-205ENST00000480139 AMOTL2Q9Y2J4 779 aa28.45■■■□□ 2.14
LIME1-205ENST00000480139 XIRP1Q702N8 1843 aaKnown RBP28.45■■■□□ 2.14
LIME1-205ENST00000480139 KNDC1Q76NI1 1749 aa28.44■■■□□ 2.14
LIME1-205ENST00000480139 ADGRB1O14514 1584 aa28.43■■■□□ 2.14
LIME1-205ENST00000480139 CFAP70Q5T0N1 1121 aa28.43■■■□□ 2.14
LIME1-205ENST00000480139 PTCH1Q13635 1447 aa28.43■■■□□ 2.14
LIME1-205ENST00000480139 TECPR2O15040 1411 aa28.41■■■□□ 2.14
LIME1-205ENST00000480139 LRPPRCP42704 1394 aaKnown RBP28.4■■■□□ 2.14
LIME1-205ENST00000480139 TIMELESSQ9UNS1 1208 aa28.4■■■□□ 2.14
LIME1-205ENST00000480139 NCOA3Q9Y6Q9 1424 aa28.4■■■□□ 2.14
LIME1-205ENST00000480139 YTHDC2Q9H6S0 1430 aaKnown RBP28.39■■■□□ 2.14
LIME1-205ENST00000480139 PROSER2Q86WR7 435 aaPredicted RBP28.38■■■□□ 2.13
LIME1-205ENST00000480139 TRPM1Q7Z4N2 1603 aa28.38■■■□□ 2.13
LIME1-205ENST00000480139 TMEM94Q12767 1356 aa28.37■■■□□ 2.13
LIME1-205ENST00000480139 ABCC11Q96J66 1382 aa28.37■■■□□ 2.13
LIME1-205ENST00000480139 TMEM132EQ6IEE7 984 aa28.36■■■□□ 2.13
LIME1-205ENST00000480139 ROBO2Q9HCK4 1378 aa28.33■■■□□ 2.13
LIME1-205ENST00000480139 DLC1Q96QB1 1528 aa28.33■■■□□ 2.13
LIME1-205ENST00000480139 FAM135BQ49AJ0 1406 aa28.29■■■□□ 2.12
LIME1-205ENST00000480139 SIRT1Q96EB6 747 aa28.29■■■□□ 2.12
LIME1-205ENST00000480139 STK26Q9P289 416 aa28.27■■■□□ 2.12
LIME1-205ENST00000480139 NALCNQ8IZF0 1738 aa28.26■■■□□ 2.12
LIME1-205ENST00000480139 NBPF8Q3BBV2 869 aa28.26■■■□□ 2.11
LIME1-205ENST00000480139 RALGAPBQ86X10 1494 aa28.26■■■□□ 2.11
LIME1-205ENST00000480139 MSH6P52701 1360 aa28.25■■■□□ 2.11
LIME1-205ENST00000480139 ARHGEF28Q8N1W1 1705 aaKnown RBP28.25■■■□□ 2.11
LIME1-205ENST00000480139 ADGRL3Q9HAR2 1447 aa28.25■■■□□ 2.11
LIME1-205ENST00000480139 NBPF1Q3BBV0 1214 aa28.24■■■□□ 2.11
LIME1-205ENST00000480139 RBM33Q96EV2 1170 aaKnown RBP28.24■■■□□ 2.11
LIME1-205ENST00000480139 DCCP43146 1447 aa28.24■■■□□ 2.11
LIME1-205ENST00000480139 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.23■■■□□ 2.11
LIME1-205ENST00000480139 GPRASP1Q5JY77 1395 aa28.23■■■□□ 2.11
LIME1-205ENST00000480139 C19orf44Q9H6X5 657 aa28.21■■■□□ 2.11
LIME1-205ENST00000480139 ROCK2O75116 1388 aaKnown RBP28.21■■■□□ 2.11
LIME1-205ENST00000480139 C14orf37Q86TY3 774 aa28.18■■■□□ 2.1
LIME1-205ENST00000480139 TRAK1Q9UPV9 953 aa28.18■■■□□ 2.1
LIME1-205ENST00000480139 PLEKHH1Q9ULM0 1364 aa28.17■■■□□ 2.1
LIME1-205ENST00000480139 TOM1O60784 492 aa28.17■■■□□ 2.1
LIME1-205ENST00000480139 CDC42BPGQ6DT37 1551 aa28.16■■■□□ 2.1
LIME1-205ENST00000480139 WAPLQ7Z5K2 1190 aa28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms