RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 PPP1R15AO75807 674 aaPredicted RBP23.19■■□□□ 1.3
HMGA1-206ENST00000478214 HDGFP51858 240 aaKnown RBP23.19■■□□□ 1.3
HMGA1-206ENST00000478214 SENP3Q9H4L4 574 aaPredicted RBP23.19■■□□□ 1.3
HMGA1-206ENST00000478214 ACIN1Q9UKV3 1341 aaKnown RBP23.18■■□□□ 1.3
HMGA1-206ENST00000478214 NUTM2DQ5VT03 806 aaPredicted RBP23.18■■□□□ 1.3
HMGA1-206ENST00000478214 CLTCL1P53675 1640 aa23.18■■□□□ 1.3
HMGA1-206ENST00000478214 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.17■■□□□ 1.3
HMGA1-206ENST00000478214 BCANQ96GW7 911 aa23.17■■□□□ 1.3
HMGA1-206ENST00000478214 SLC26A8Q96RN1 970 aa23.17■■□□□ 1.3
HMGA1-206ENST00000478214 PLEKHG1Q9ULL1 1385 aa23.14■■□□□ 1.3
HMGA1-206ENST00000478214 CPS1P31327 1500 aa23.14■■□□□ 1.3
HMGA1-206ENST00000478214 IQSEC2Q5JU85 1478 aa23.14■■□□□ 1.29
HMGA1-206ENST00000478214 ZNF326Q5BKZ1 582 aaKnown RBP23.14■■□□□ 1.29
HMGA1-206ENST00000478214 HRCP23327 699 aa23.09■■□□□ 1.29
HMGA1-206ENST00000478214 STRCP1A6NGW2 1772 aa23.09■■□□□ 1.29
HMGA1-206ENST00000478214 KCNA6P17658 529 aa23.06■■□□□ 1.28
HMGA1-206ENST00000478214 LRRC7Q96NW7 1537 aa23.06■■□□□ 1.28
HMGA1-206ENST00000478214 CCDC144AA2RUR9 1427 aa23.06■■□□□ 1.28
HMGA1-206ENST00000478214 TBX22Q9Y458 520 aa23.05■■□□□ 1.28
HMGA1-206ENST00000478214 ADAMTS13Q76LX8 1427 aa23.05■■□□□ 1.28
HMGA1-206ENST00000478214 KIF1BO60333 1816 aa23.04■■□□□ 1.28
HMGA1-206ENST00000478214 UBAP1LF5GYI3 381 aa23.04■■□□□ 1.28
HMGA1-206ENST00000478214 NEXMIFQ5QGS0 1516 aa23.03■■□□□ 1.28
HMGA1-206ENST00000478214 RPGRIP1LQ68CZ1 1315 aa23■■□□□ 1.27
HMGA1-206ENST00000478214 RGL3Q3MIN7 710 aa22.98■■□□□ 1.27
HMGA1-206ENST00000478214 SPATA31E1Q6ZUB1 1445 aa22.98■■□□□ 1.27
HMGA1-206ENST00000478214 VGFO15240 615 aaPredicted RBP22.97■■□□□ 1.27
HMGA1-206ENST00000478214 PROSER2Q86WR7 435 aaPredicted RBP22.97■■□□□ 1.27
HMGA1-206ENST00000478214 DIP2AQ14689 1571 aa22.97■■□□□ 1.27
HMGA1-206ENST00000478214 NWD1Q149M9 1564 aa22.97■■□□□ 1.27
HMGA1-206ENST00000478214 RBM33Q96EV2 1170 aaKnown RBP22.96■■□□□ 1.27
HMGA1-206ENST00000478214 TMEM94Q12767 1356 aa22.96■■□□□ 1.27
HMGA1-206ENST00000478214 SETBP1Q9Y6X0 1596 aa22.96■■□□□ 1.27
HMGA1-206ENST00000478214 TOM1O60784 492 aa22.95■■□□□ 1.26
HMGA1-206ENST00000478214 ANKRD30BQ9BXX2 1392 aa22.95■■□□□ 1.26
HMGA1-206ENST00000478214 NRXN3Q9Y4C0 1643 aa22.95■■□□□ 1.26
HMGA1-206ENST00000478214 NKTRP30414 1462 aaKnown RBP22.94■■□□□ 1.26
HMGA1-206ENST00000478214 PIK3R4Q99570 1358 aa22.94■■□□□ 1.26
HMGA1-206ENST00000478214 PIP4K2BP78356 416 aa22.92■■□□□ 1.26
HMGA1-206ENST00000478214 CHD2O14647 1828 aaKnown RBP22.92■■□□□ 1.26
HMGA1-206ENST00000478214 PTPRUQ92729 1446 aa22.91■■□□□ 1.26
HMGA1-206ENST00000478214 METP08581 1390 aa22.91■■□□□ 1.26
HMGA1-206ENST00000478214 AMOTL2Q9Y2J4 779 aa22.91■■□□□ 1.26
HMGA1-206ENST00000478214 SCAF1Q9H7N4 1312 aaKnown RBP22.9■■□□□ 1.26
HMGA1-206ENST00000478214 ALKQ9UM73 1620 aa22.89■■□□□ 1.25
HMGA1-206ENST00000478214 XIRP1Q702N8 1843 aaKnown RBP22.89■■□□□ 1.25
HMGA1-206ENST00000478214 PPLO60437 1756 aa22.89■■□□□ 1.25
HMGA1-206ENST00000478214 ADGRF5Q8IZF2 1346 aa22.88■■□□□ 1.25
HMGA1-206ENST00000478214 TRIM26Q12899 539 aaPredicted RBP22.86■■□□□ 1.25
HMGA1-206ENST00000478214 MSH6P52701 1360 aa22.81■■□□□ 1.24
HMGA1-206ENST00000478214 C14orf37Q86TY3 774 aa22.81■■□□□ 1.24
HMGA1-206ENST00000478214 XRN1Q8IZH2 1706 aaKnown RBP22.8■■□□□ 1.24
HMGA1-206ENST00000478214 IFT172Q9UG01 1749 aa22.8■■□□□ 1.24
HMGA1-206ENST00000478214 NCOA3Q9Y6Q9 1424 aa22.79■■□□□ 1.24
HMGA1-206ENST00000478214 SETD1AO15047 1707 aaKnown RBP22.78■■□□□ 1.24
HMGA1-206ENST00000478214 PIK3C2GO75747 1445 aa22.77■■□□□ 1.24
HMGA1-206ENST00000478214 HSPA1LP34931 641 aa22.77■■□□□ 1.24
HMGA1-206ENST00000478214 MYOM2P54296 1465 aa22.75■■□□□ 1.23
HMGA1-206ENST00000478214 C19orf44Q9H6X5 657 aa22.75■■□□□ 1.23
HMGA1-206ENST00000478214 NRXN1Q9ULB1 1477 aa22.74■■□□□ 1.23
HMGA1-206ENST00000478214 DCAF11Q8TEB1 546 aa22.73■■□□□ 1.23
HMGA1-206ENST00000478214 KDM2AQ9Y2K7 1162 aa22.73■■□□□ 1.23
HMGA1-206ENST00000478214 ROBO2Q9HCK4 1378 aa22.73■■□□□ 1.23
HMGA1-206ENST00000478214 TMEM132EQ6IEE7 984 aa22.72■■□□□ 1.23
HMGA1-206ENST00000478214 SLAIN2Q9P270 581 aa22.72■■□□□ 1.23
HMGA1-206ENST00000478214 DHX57Q6P158 1386 aaKnown RBP22.72■■□□□ 1.23
HMGA1-206ENST00000478214 CFAP70Q5T0N1 1121 aa22.71■■□□□ 1.23
HMGA1-206ENST00000478214 C14orf93Q9H972 538 aaKnown RBP22.71■■□□□ 1.23
HMGA1-206ENST00000478214 PTCH1Q13635 1447 aa22.71■■□□□ 1.23
HMGA1-206ENST00000478214 FAM135BQ49AJ0 1406 aa22.71■■□□□ 1.23
HMGA1-206ENST00000478214 ATF3P18847 181 aa22.7■■□□□ 1.22
HMGA1-206ENST00000478214 CADPS2Q86UW7 1296 aa22.7■■□□□ 1.22
HMGA1-206ENST00000478214 STK26Q9P289 416 aa22.7■■□□□ 1.22
HMGA1-206ENST00000478214 PRAG1Q86YV5 1406 aa22.7■■□□□ 1.22
HMGA1-206ENST00000478214 ASXL1Q8IXJ9 1541 aa22.7■■□□□ 1.22
HMGA1-206ENST00000478214 LRPPRCP42704 1394 aaKnown RBP22.68■■□□□ 1.22
HMGA1-206ENST00000478214 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.68■■□□□ 1.22
HMGA1-206ENST00000478214 ADGRL3Q9HAR2 1447 aa22.66■■□□□ 1.22
HMGA1-206ENST00000478214 STAC3Q96MF2 364 aa22.66■■□□□ 1.22
HMGA1-206ENST00000478214 ABCC11Q96J66 1382 aa22.65■■□□□ 1.22
HMGA1-206ENST00000478214 DCCP43146 1447 aa22.65■■□□□ 1.22
HMGA1-206ENST00000478214 YTHDC2Q9H6S0 1430 aaKnown RBP22.65■■□□□ 1.22
HMGA1-206ENST00000478214 SIN3AQ96ST3 1273 aa22.64■■□□□ 1.21
HMGA1-206ENST00000478214 TECPR2O15040 1411 aa22.64■■□□□ 1.21
HMGA1-206ENST00000478214 ROBO1Q9Y6N7 1651 aa22.62■■□□□ 1.21
HMGA1-206ENST00000478214 WAPLQ7Z5K2 1190 aa22.62■■□□□ 1.21
HMGA1-206ENST00000478214 NALCNQ8IZF0 1738 aa22.6■■□□□ 1.21
HMGA1-206ENST00000478214 LAMC1P11047 1609 aa22.6■■□□□ 1.21
HMGA1-206ENST00000478214 NEUROD1Q13562 356 aa22.59■■□□□ 1.21
HMGA1-206ENST00000478214 PLEKHH1Q9ULM0 1364 aa22.59■■□□□ 1.21
HMGA1-206ENST00000478214 MST1RQ04912 1400 aa22.58■■□□□ 1.21
HMGA1-206ENST00000478214 BRINP3Q76B58 766 aa22.57■■□□□ 1.2
HMGA1-206ENST00000478214 L3MBTL2Q969R5 705 aa22.57■■□□□ 1.2
HMGA1-206ENST00000478214 ADGRB1O14514 1584 aa22.56■■□□□ 1.2
HMGA1-206ENST00000478214 SIRT1Q96EB6 747 aa22.56■■□□□ 1.2
HMGA1-206ENST00000478214 KNDC1Q76NI1 1749 aa22.55■■□□□ 1.2
HMGA1-206ENST00000478214 TRAK1Q9UPV9 953 aa22.53■■□□□ 1.2
HMGA1-206ENST00000478214 PRAM1Q96QH2 718 aa22.52■■□□□ 1.2
HMGA1-206ENST00000478214 PCGF6Q9BYE7 350 aa22.52■■□□□ 1.2
HMGA1-206ENST00000478214 C1orf167Q5SNV9 1468 aa22.52■■□□□ 1.2
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