RNA–Protein interactions for RNA: ENST00000477561.5

HDAC6-221, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 764 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-221ENST00000477561 TMEM131LA2VDJ0 1609 aa12.39□□□□□ -0.43
HDAC6-221ENST00000477561 IQSEC2Q5JU85 1478 aa12.39□□□□□ -0.43
HDAC6-221ENST00000477561 MYO5BQ9ULV0 1848 aa12.39□□□□□ -0.43
HDAC6-221ENST00000477561 CPS1P31327 1500 aa12.38□□□□□ -0.43
HDAC6-221ENST00000477561 ZFYVE9O95405 1425 aa12.37□□□□□ -0.43
HDAC6-221ENST00000477561 HDGFP51858 240 aaKnown RBP12.37□□□□□ -0.43
HDAC6-221ENST00000477561 ZNF326Q5BKZ1 582 aaKnown RBP12.37□□□□□ -0.43
HDAC6-221ENST00000477561 STRCP1A6NGW2 1772 aa12.37□□□□□ -0.43
HDAC6-221ENST00000477561 SPHKAPQ2M3C7 1700 aa12.36□□□□□ -0.43
HDAC6-221ENST00000477561 SCAF1Q9H7N4 1312 aaKnown RBP12.36□□□□□ -0.43
HDAC6-221ENST00000477561 PIP4K2BP78356 416 aa12.35□□□□□ -0.43
HDAC6-221ENST00000477561 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.35□□□□□ -0.43
HDAC6-221ENST00000477561 LRRC7Q96NW7 1537 aa12.35□□□□□ -0.43
HDAC6-221ENST00000477561 PLEKHG1Q9ULL1 1385 aa12.34□□□□□ -0.43
HDAC6-221ENST00000477561 RBM33Q96EV2 1170 aaKnown RBP12.34□□□□□ -0.43
HDAC6-221ENST00000477561 TOM1O60784 492 aa12.33□□□□□ -0.44
HDAC6-221ENST00000477561 KCNA6P17658 529 aa12.33□□□□□ -0.44
HDAC6-221ENST00000477561 MPHOSPH9Q99550 1183 aa12.33□□□□□ -0.44
HDAC6-221ENST00000477561 SETD5Q9C0A6 1442 aa12.33□□□□□ -0.44
HDAC6-221ENST00000477561 CLTCL1P53675 1640 aa12.33□□□□□ -0.44
HDAC6-221ENST00000477561 TRPM2O94759 1503 aa12.32□□□□□ -0.44
HDAC6-221ENST00000477561 PROSER2Q86WR7 435 aaPredicted RBP12.31□□□□□ -0.44
HDAC6-221ENST00000477561 TBX22Q9Y458 520 aa12.3□□□□□ -0.44
HDAC6-221ENST00000477561 RAB3GAP2Q9H2M9 1393 aa12.3□□□□□ -0.44
HDAC6-221ENST00000477561 TMEM94Q12767 1356 aa12.29□□□□□ -0.44
HDAC6-221ENST00000477561 ADAMTS13Q76LX8 1427 aa12.28□□□□□ -0.44
HDAC6-221ENST00000477561 PIAS4Q8N2W9 510 aaPredicted RBP12.28□□□□□ -0.44
HDAC6-221ENST00000477561 ALKQ9UM73 1620 aa12.26□□□□□ -0.45
HDAC6-221ENST00000477561 KIF1BO60333 1816 aa12.26□□□□□ -0.45
HDAC6-221ENST00000477561 HSPA1LP34931 641 aa12.26□□□□□ -0.45
HDAC6-221ENST00000477561 RGL3Q3MIN7 710 aa12.26□□□□□ -0.45
HDAC6-221ENST00000477561 XIRP1Q702N8 1843 aaKnown RBP12.25□□□□□ -0.45
HDAC6-221ENST00000477561 AMOTL2Q9Y2J4 779 aa12.25□□□□□ -0.45
HDAC6-221ENST00000477561 NEXMIFQ5QGS0 1516 aa12.25□□□□□ -0.45
HDAC6-221ENST00000477561 NWD1Q149M9 1564 aa12.25□□□□□ -0.45
HDAC6-221ENST00000477561 CCDC144AA2RUR9 1427 aa12.24□□□□□ -0.45
HDAC6-221ENST00000477561 CHD2O14647 1828 aaKnown RBP12.24□□□□□ -0.45
HDAC6-221ENST00000477561 NKTRP30414 1462 aaKnown RBP12.23□□□□□ -0.45
HDAC6-221ENST00000477561 PTPRUQ92729 1446 aa12.23□□□□□ -0.45
HDAC6-221ENST00000477561 ACIN1Q9UKV3 1341 aaKnown RBP12.23□□□□□ -0.45
HDAC6-221ENST00000477561 VGFO15240 615 aaPredicted RBP12.23□□□□□ -0.45
HDAC6-221ENST00000477561 C14orf37Q86TY3 774 aa12.23□□□□□ -0.45
HDAC6-221ENST00000477561 NRXN3Q9Y4C0 1643 aa12.22□□□□□ -0.45
HDAC6-221ENST00000477561 DIP2AQ14689 1571 aa12.22□□□□□ -0.45
HDAC6-221ENST00000477561 METP08581 1390 aa12.22□□□□□ -0.45
HDAC6-221ENST00000477561 RPGRIP1LQ68CZ1 1315 aa12.22□□□□□ -0.45
HDAC6-221ENST00000477561 SETBP1Q9Y6X0 1596 aa12.22□□□□□ -0.45
HDAC6-221ENST00000477561 PIK3R4Q99570 1358 aa12.21□□□□□ -0.45
HDAC6-221ENST00000477561 MSH6P52701 1360 aa12.2□□□□□ -0.46
HDAC6-221ENST00000477561 ADGRF5Q8IZF2 1346 aa12.19□□□□□ -0.46
HDAC6-221ENST00000477561 SPATA31E1Q6ZUB1 1445 aa12.19□□□□□ -0.46
HDAC6-221ENST00000477561 DISP3Q9P2K9 1392 aa12.18□□□□□ -0.46
HDAC6-221ENST00000477561 HRCP23327 699 aa12.17□□□□□ -0.46
HDAC6-221ENST00000477561 SLAIN2Q9P270 581 aa12.17□□□□□ -0.46
HDAC6-221ENST00000477561 PPLO60437 1756 aa12.17□□□□□ -0.46
HDAC6-221ENST00000477561 ATF3P18847 181 aa12.16□□□□□ -0.46
HDAC6-221ENST00000477561 C19orf44Q9H6X5 657 aa12.16□□□□□ -0.46
HDAC6-221ENST00000477561 XRN1Q8IZH2 1706 aaKnown RBP12.15□□□□□ -0.46
HDAC6-221ENST00000477561 FAM135BQ49AJ0 1406 aa12.15□□□□□ -0.46
HDAC6-221ENST00000477561 NCOA3Q9Y6Q9 1424 aa12.15□□□□□ -0.46
HDAC6-221ENST00000477561 TRIM26Q12899 539 aaPredicted RBP12.15□□□□□ -0.46
HDAC6-221ENST00000477561 ANKRD30BQ9BXX2 1392 aa12.15□□□□□ -0.46
HDAC6-221ENST00000477561 ROBO1Q9Y6N7 1651 aa12.13□□□□□ -0.47
HDAC6-221ENST00000477561 TMEM132EQ6IEE7 984 aa12.13□□□□□ -0.47
HDAC6-221ENST00000477561 CADPS2Q86UW7 1296 aa12.13□□□□□ -0.47
HDAC6-221ENST00000477561 STK26Q9P289 416 aa12.13□□□□□ -0.47
HDAC6-221ENST00000477561 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.13□□□□□ -0.47
HDAC6-221ENST00000477561 SETD1AO15047 1707 aaKnown RBP12.12□□□□□ -0.47
HDAC6-221ENST00000477561 ROBO2Q9HCK4 1378 aa12.12□□□□□ -0.47
HDAC6-221ENST00000477561 KDM2AQ9Y2K7 1162 aa12.11□□□□□ -0.47
HDAC6-221ENST00000477561 IFT172Q9UG01 1749 aa12.11□□□□□ -0.47
HDAC6-221ENST00000477561 CFAP70Q5T0N1 1121 aa12.1□□□□□ -0.47
HDAC6-221ENST00000477561 PIK3C2GO75747 1445 aa12.1□□□□□ -0.47
HDAC6-221ENST00000477561 ILDR2Q71H61 639 aa12.09□□□□□ -0.47
HDAC6-221ENST00000477561 DCAF11Q8TEB1 546 aa12.09□□□□□ -0.47
HDAC6-221ENST00000477561 ADGRL3Q9HAR2 1447 aa12.09□□□□□ -0.47
HDAC6-221ENST00000477561 BRINP3Q76B58 766 aa12.08□□□□□ -0.48
HDAC6-221ENST00000477561 WAPLQ7Z5K2 1190 aa12.08□□□□□ -0.48
HDAC6-221ENST00000477561 C14orf93Q9H972 538 aaKnown RBP12.08□□□□□ -0.48
HDAC6-221ENST00000477561 PTCH1Q13635 1447 aa12.08□□□□□ -0.48
HDAC6-221ENST00000477561 MED1Q15648 1581 aaPredicted RBP12.07□□□□□ -0.48
HDAC6-221ENST00000477561 ASXL1Q8IXJ9 1541 aa12.06□□□□□ -0.48
HDAC6-221ENST00000477561 LRPPRCP42704 1394 aaKnown RBP12.06□□□□□ -0.48
HDAC6-221ENST00000477561 NALCNQ8IZF0 1738 aa12.06□□□□□ -0.48
HDAC6-221ENST00000477561 DCCP43146 1447 aa12.06□□□□□ -0.48
HDAC6-221ENST00000477561 MST1RQ04912 1400 aa12.06□□□□□ -0.48
HDAC6-221ENST00000477561 DDX17Q92841 729 aaKnown RBP12.06□□□□□ -0.48
HDAC6-221ENST00000477561 MYOM2P54296 1465 aa12.06□□□□□ -0.48
HDAC6-221ENST00000477561 PHLPP1O60346 1717 aa12.06□□□□□ -0.48
HDAC6-221ENST00000477561 PLEKHH1Q9ULM0 1364 aa12.05□□□□□ -0.48
HDAC6-221ENST00000477561 YTHDC2Q9H6S0 1430 aaKnown RBP12.05□□□□□ -0.48
HDAC6-221ENST00000477561 PCGF6Q9BYE7 350 aa12.05□□□□□ -0.48
HDAC6-221ENST00000477561 NRXN1Q9ULB1 1477 aa12.05□□□□□ -0.48
HDAC6-221ENST00000477561 DHX57Q6P158 1386 aaKnown RBP12.05□□□□□ -0.48
HDAC6-221ENST00000477561 ABCC11Q96J66 1382 aa12.05□□□□□ -0.48
HDAC6-221ENST00000477561 NUTM2FA1L443 756 aa12.04□□□□□ -0.48
HDAC6-221ENST00000477561 PRAG1Q86YV5 1406 aa12.03□□□□□ -0.48
HDAC6-221ENST00000477561 SAFB2Q14151 953 aaKnown RBP eCLIP12.03□□□□□ -0.48
HDAC6-221ENST00000477561 ORAI2Q96SN7 254 aa12.03□□□□□ -0.48
HDAC6-221ENST00000477561 TECPR2O15040 1411 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 178.3 ms