RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 SPATA31E1Q6ZUB1 1445 aa25.01■■□□□ 1.59
SCAF11-206ENST00000474828 TXNDC2Q86VQ3 553 aa25■■□□□ 1.59
SCAF11-206ENST00000474828 RIMS2Q9UQ26 1411 aa24.99■■□□□ 1.59
SCAF11-206ENST00000474828 KIF1BO60333 1816 aa24.98■■□□□ 1.59
SCAF11-206ENST00000474828 CERKQ8TCT0 537 aa24.98■■□□□ 1.59
SCAF11-206ENST00000474828 EID1Q9Y6B2 187 aa24.98■■□□□ 1.59
SCAF11-206ENST00000474828 IQGAP1P46940 1657 aa24.97■■□□□ 1.59
SCAF11-206ENST00000474828 HDGFP51858 240 aaKnown RBP24.96■■□□□ 1.59
SCAF11-206ENST00000474828 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.95■■□□□ 1.58
SCAF11-206ENST00000474828 NEXMIFQ5QGS0 1516 aa24.95■■□□□ 1.58
SCAF11-206ENST00000474828 PLEKHG1Q9ULL1 1385 aa24.94■■□□□ 1.58
SCAF11-206ENST00000474828 RPGRIP1LQ68CZ1 1315 aa24.94■■□□□ 1.58
SCAF11-206ENST00000474828 CHGAP10645 457 aaKnown RBP24.92■■□□□ 1.58
SCAF11-206ENST00000474828 DHX57Q6P158 1386 aaKnown RBP24.91■■□□□ 1.58
SCAF11-206ENST00000474828 LTBP4Q8N2S1 1624 aa24.89■■□□□ 1.57
SCAF11-206ENST00000474828 SETBP1Q9Y6X0 1596 aa24.87■■□□□ 1.57
SCAF11-206ENST00000474828 ADAMTS13Q76LX8 1427 aa24.86■■□□□ 1.57
SCAF11-206ENST00000474828 PPLO60437 1756 aa24.85■■□□□ 1.57
SCAF11-206ENST00000474828 IFT172Q9UG01 1749 aa24.84■■□□□ 1.57
SCAF11-206ENST00000474828 ZNF326Q5BKZ1 582 aaKnown RBP24.83■■□□□ 1.57
SCAF11-206ENST00000474828 TBX22Q9Y458 520 aa24.83■■□□□ 1.57
SCAF11-206ENST00000474828 DIP2AQ14689 1571 aa24.83■■□□□ 1.57
SCAF11-206ENST00000474828 NRXN3Q9Y4C0 1643 aa24.83■■□□□ 1.56
SCAF11-206ENST00000474828 VGFO15240 615 aaPredicted RBP24.82■■□□□ 1.56
SCAF11-206ENST00000474828 PCGF6Q9BYE7 350 aa24.82■■□□□ 1.56
SCAF11-206ENST00000474828 ZNF335Q9H4Z2 1342 aaPredicted RBP24.81■■□□□ 1.56
SCAF11-206ENST00000474828 PPP1R15AO75807 674 aaPredicted RBP24.79■■□□□ 1.56
SCAF11-206ENST00000474828 PIK3R4Q99570 1358 aa24.79■■□□□ 1.56
SCAF11-206ENST00000474828 NRXN1Q9ULB1 1477 aa24.78■■□□□ 1.56
SCAF11-206ENST00000474828 MYOM2P54296 1465 aa24.77■■□□□ 1.56
SCAF11-206ENST00000474828 CPS1P31327 1500 aa24.77■■□□□ 1.56
SCAF11-206ENST00000474828 NWD1Q149M9 1564 aa24.76■■□□□ 1.55
SCAF11-206ENST00000474828 NUTM2DQ5VT03 806 aaPredicted RBP24.76■■□□□ 1.55
SCAF11-206ENST00000474828 STAC3Q96MF2 364 aa24.76■■□□□ 1.55
SCAF11-206ENST00000474828 RGL3Q3MIN7 710 aa24.75■■□□□ 1.55
SCAF11-206ENST00000474828 SLC26A8Q96RN1 970 aa24.75■■□□□ 1.55
SCAF11-206ENST00000474828 IQSEC2Q5JU85 1478 aa24.75■■□□□ 1.55
SCAF11-206ENST00000474828 STRCP1A6NGW2 1772 aa24.75■■□□□ 1.55
SCAF11-206ENST00000474828 SETD1AO15047 1707 aaKnown RBP24.72■■□□□ 1.55
SCAF11-206ENST00000474828 PIK3C2GO75747 1445 aa24.72■■□□□ 1.55
SCAF11-206ENST00000474828 ADGRF5Q8IZF2 1346 aa24.72■■□□□ 1.55
SCAF11-206ENST00000474828 KCNA6P17658 529 aa24.72■■□□□ 1.55
SCAF11-206ENST00000474828 CHD2O14647 1828 aaKnown RBP24.7■■□□□ 1.55
SCAF11-206ENST00000474828 PRAG1Q86YV5 1406 aa24.69■■□□□ 1.54
SCAF11-206ENST00000474828 ALKQ9UM73 1620 aa24.69■■□□□ 1.54
SCAF11-206ENST00000474828 NKTRP30414 1462 aaKnown RBP24.69■■□□□ 1.54
SCAF11-206ENST00000474828 METP08581 1390 aa24.67■■□□□ 1.54
SCAF11-206ENST00000474828 LRRC7Q96NW7 1537 aa24.66■■□□□ 1.54
SCAF11-206ENST00000474828 PTPRUQ92729 1446 aa24.66■■□□□ 1.54
SCAF11-206ENST00000474828 XRN1Q8IZH2 1706 aaKnown RBP24.64■■□□□ 1.54
SCAF11-206ENST00000474828 BCANQ96GW7 911 aa24.64■■□□□ 1.54
SCAF11-206ENST00000474828 SIN3AQ96ST3 1273 aa24.64■■□□□ 1.54
SCAF11-206ENST00000474828 CLSPNQ9HAW4 1339 aa24.63■■□□□ 1.53
SCAF11-206ENST00000474828 C14orf93Q9H972 538 aaKnown RBP24.62■■□□□ 1.53
SCAF11-206ENST00000474828 LAMC1P11047 1609 aa24.61■■□□□ 1.53
SCAF11-206ENST00000474828 DCAF11Q8TEB1 546 aa24.6■■□□□ 1.53
SCAF11-206ENST00000474828 NCOA3Q9Y6Q9 1424 aa24.6■■□□□ 1.53
SCAF11-206ENST00000474828 ASXL1Q8IXJ9 1541 aa24.59■■□□□ 1.53
SCAF11-206ENST00000474828 AMOTL2Q9Y2J4 779 aa24.57■■□□□ 1.52
SCAF11-206ENST00000474828 TECPR2O15040 1411 aa24.56■■□□□ 1.52
SCAF11-206ENST00000474828 L3MBTL2Q969R5 705 aa24.56■■□□□ 1.52
SCAF11-206ENST00000474828 XIRP1Q702N8 1843 aaKnown RBP24.56■■□□□ 1.52
SCAF11-206ENST00000474828 PTCH1Q13635 1447 aa24.55■■□□□ 1.52
SCAF11-206ENST00000474828 ADGRB1O14514 1584 aa24.54■■□□□ 1.52
SCAF11-206ENST00000474828 TMEM94Q12767 1356 aa24.54■■□□□ 1.52
SCAF11-206ENST00000474828 ABCC11Q96J66 1382 aa24.53■■□□□ 1.52
SCAF11-206ENST00000474828 LRPPRCP42704 1394 aaKnown RBP24.52■■□□□ 1.52
SCAF11-206ENST00000474828 CFAP70Q5T0N1 1121 aa24.51■■□□□ 1.51
SCAF11-206ENST00000474828 KIAA1210Q9ULL0 1709 aa24.51■■□□□ 1.51
SCAF11-206ENST00000474828 NEUROD1Q13562 356 aa24.5■■□□□ 1.51
SCAF11-206ENST00000474828 PROSER2Q86WR7 435 aaPredicted RBP24.5■■□□□ 1.51
SCAF11-206ENST00000474828 KDM2AQ9Y2K7 1162 aa24.5■■□□□ 1.51
SCAF11-206ENST00000474828 SIRT1Q96EB6 747 aa24.49■■□□□ 1.51
SCAF11-206ENST00000474828 DISP3Q9P2K9 1392 aa24.49■■□□□ 1.51
SCAF11-206ENST00000474828 KNDC1Q76NI1 1749 aa24.49■■□□□ 1.51
SCAF11-206ENST00000474828 YTHDC2Q9H6S0 1430 aaKnown RBP24.48■■□□□ 1.51
SCAF11-206ENST00000474828 ROBO2Q9HCK4 1378 aa24.47■■□□□ 1.51
SCAF11-206ENST00000474828 TMEM132EQ6IEE7 984 aa24.45■■□□□ 1.5
SCAF11-206ENST00000474828 TIMELESSQ9UNS1 1208 aa24.45■■□□□ 1.5
SCAF11-206ENST00000474828 FAM135BQ49AJ0 1406 aa24.44■■□□□ 1.5
SCAF11-206ENST00000474828 UBAP1LF5GYI3 381 aa24.44■■□□□ 1.5
SCAF11-206ENST00000474828 DLC1Q96QB1 1528 aa24.44■■□□□ 1.5
SCAF11-206ENST00000474828 DCCP43146 1447 aa24.42■■□□□ 1.5
SCAF11-206ENST00000474828 TONSLQ96HA7 1378 aa24.42■■□□□ 1.5
SCAF11-206ENST00000474828 C19orf44Q9H6X5 657 aa24.4■■□□□ 1.5
SCAF11-206ENST00000474828 ADGRL3Q9HAR2 1447 aa24.4■■□□□ 1.5
SCAF11-206ENST00000474828 RBM33Q96EV2 1170 aaKnown RBP24.38■■□□□ 1.49
SCAF11-206ENST00000474828 MSH6P52701 1360 aa24.38■■□□□ 1.49
SCAF11-206ENST00000474828 TRPM1Q7Z4N2 1603 aa24.38■■□□□ 1.49
SCAF11-206ENST00000474828 TOM1O60784 492 aa24.37■■□□□ 1.49
SCAF11-206ENST00000474828 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.36■■□□□ 1.49
SCAF11-206ENST00000474828 NBPF8Q3BBV2 869 aa24.36■■□□□ 1.49
SCAF11-206ENST00000474828 GPRASP1Q5JY77 1395 aa24.36■■□□□ 1.49
SCAF11-206ENST00000474828 CCER1Q8TC90 406 aaPredicted RBP24.35■■□□□ 1.49
SCAF11-206ENST00000474828 NALCNQ8IZF0 1738 aa24.35■■□□□ 1.49
SCAF11-206ENST00000474828 NBPF1Q3BBV0 1214 aa24.34■■□□□ 1.49
SCAF11-206ENST00000474828 ILDR2Q71H61 639 aa24.34■■□□□ 1.49
SCAF11-206ENST00000474828 STK26Q9P289 416 aa24.33■■□□□ 1.49
SCAF11-206ENST00000474828 PLEKHH1Q9ULM0 1364 aa24.31■■□□□ 1.48
SCAF11-206ENST00000474828 CADPS2Q86UW7 1296 aa24.31■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms