RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 NISCHQ9Y2I1 1504 aa41.1■■■■■ 4.17
SCAF11-206ENST00000474828 CCDC180Q9P1Z9 1646 aa36.46■■■■□ 3.43
SCAF11-206ENST00000474828 ABCC9O60706 1549 aa35.32■■■■□ 3.24
SCAF11-206ENST00000474828 ZCCHC6Q5VYS8 1495 aaKnown RBP34.3■■■■□ 3.08
SCAF11-206ENST00000474828 MYO15BQ96JP2 1530 aa34.24■■■■□ 3.07
SCAF11-206ENST00000474828 NACADO15069 1562 aa34.23■■■■□ 3.07
SCAF11-206ENST00000474828 RB1CC1Q8TDY2 1594 aa34.16■■■■□ 3.06
SCAF11-206ENST00000474828 DCAF1Q9Y4B6 1507 aa34.14■■■■□ 3.06
SCAF11-206ENST00000474828 DCAF8L2P0C7V8 631 aa33.93■■■■□ 3.02
SCAF11-206ENST00000474828 UNC13AQ9UPW8 1703 aa33.36■■■□□ 2.93
SCAF11-206ENST00000474828 BICRAQ9NZM4 1560 aa33.19■■■□□ 2.9
SCAF11-206ENST00000474828 SCRIBQ14160 1630 aa33.12■■■□□ 2.89
SCAF11-206ENST00000474828 PABPN1Q86U42 306 aaKnown RBP eCLIP33■■■□□ 2.87
SCAF11-206ENST00000474828 SHROOM4Q9ULL8 1493 aa32.95■■■□□ 2.87
SCAF11-206ENST00000474828 DNAJC5BQ9UF47 199 aa32.75■■■□□ 2.83
SCAF11-206ENST00000474828 EIF4G1Q04637 1599 aaKnown RBP32.24■■■□□ 2.75
SCAF11-206ENST00000474828 CC2D2AQ9P2K1 1620 aa32.02■■■□□ 2.72
SCAF11-206ENST00000474828 CECR2Q9BXF3 1484 aa31.94■■■□□ 2.7
SCAF11-206ENST00000474828 BAZ1AQ9NRL2 1556 aaPredicted RBP31.82■■■□□ 2.68
SCAF11-206ENST00000474828 SMARCA4P51532 1647 aa31.81■■■□□ 2.68
SCAF11-206ENST00000474828 MROH2BQ7Z745 1585 aa31.64■■■□□ 2.65
SCAF11-206ENST00000474828 NCAPD3P42695 1498 aa31.63■■■□□ 2.65
SCAF11-206ENST00000474828 PEG3Q9GZU2 1588 aa31.63■■■□□ 2.65
SCAF11-206ENST00000474828 ATAD2BQ9ULI0 1458 aa31.62■■■□□ 2.65
SCAF11-206ENST00000474828 SMARCA2P51531 1590 aa31.57■■■□□ 2.64
SCAF11-206ENST00000474828 HMGXB3Q12766 1538 aa31.46■■■□□ 2.63
SCAF11-206ENST00000474828 RSF1Q96T23 1441 aaPredicted RBP31.39■■■□□ 2.62
SCAF11-206ENST00000474828 BAZ1BQ9UIG0 1483 aaKnown RBP31.29■■■□□ 2.6
SCAF11-206ENST00000474828 WIZO95785 1651 aa31.25■■■□□ 2.59
SCAF11-206ENST00000474828 TOP2AP11388 1531 aaKnown RBP31■■■□□ 2.55
SCAF11-206ENST00000474828 LAMC3Q9Y6N6 1575 aa30.7■■■□□ 2.5
SCAF11-206ENST00000474828 CADPSQ9ULU8 1353 aa30.66■■■□□ 2.5
SCAF11-206ENST00000474828 NESP48681 1621 aa30.65■■■□□ 2.5
SCAF11-206ENST00000474828 CCDC88BA6NC98 1476 aa30.63■■■□□ 2.49
SCAF11-206ENST00000474828 CFTRP13569 1480 aa30.56■■■□□ 2.48
SCAF11-206ENST00000474828 SUPT5HO00267 1087 aaKnown RBP30.49■■■□□ 2.47
SCAF11-206ENST00000474828 PDS5BQ9NTI5 1447 aa30.45■■■□□ 2.46
SCAF11-206ENST00000474828 ERCC6Q03468 1493 aa30.38■■■□□ 2.45
SCAF11-206ENST00000474828 KIF21AQ7Z4S6 1674 aa30.28■■■□□ 2.44
SCAF11-206ENST00000474828 PRDM2Q13029 1718 aa30.25■■■□□ 2.43
SCAF11-206ENST00000474828 FANCD2Q9BXW9 1451 aa30.25■■■□□ 2.43
SCAF11-206ENST00000474828 THOC2Q8NI27 1593 aaKnown RBP30.22■■■□□ 2.43
SCAF11-206ENST00000474828 CEP164Q9UPV0 1460 aa30.18■■■□□ 2.42
SCAF11-206ENST00000474828 CUX2O14529 1486 aa30.15■■■□□ 2.42
SCAF11-206ENST00000474828 MRC2Q9UBG0 1479 aa30.12■■■□□ 2.41
SCAF11-206ENST00000474828 DNAJC5Q9H3Z4 198 aa30.11■■■□□ 2.41
SCAF11-206ENST00000474828 WDR62O43379 1518 aa30.06■■■□□ 2.4
SCAF11-206ENST00000474828 URB2Q14146 1524 aaKnown RBP29.96■■■□□ 2.39
SCAF11-206ENST00000474828 ABCC8Q09428 1581 aa29.87■■■□□ 2.37
SCAF11-206ENST00000474828 TOPBP1Q92547 1522 aa29.81■■■□□ 2.36
SCAF11-206ENST00000474828 DNMBPQ6XZF7 1577 aa29.8■■■□□ 2.36
SCAF11-206ENST00000474828 AEBP2Q6ZN18 517 aaPredicted RBP29.74■■■□□ 2.35
SCAF11-206ENST00000474828 CUX1P39880 1505 aa29.66■■■□□ 2.34
SCAF11-206ENST00000474828 POLA1P09884 1462 aaPredicted RBP29.58■■■□□ 2.33
SCAF11-206ENST00000474828 IFT140Q96RY7 1462 aa29.58■■■□□ 2.33
SCAF11-206ENST00000474828 WRNQ14191 1432 aaPredicted RBP eCLIP29.53■■■□□ 2.32
SCAF11-206ENST00000474828 TARBP1Q13395 1621 aaKnown RBP29.52■■■□□ 2.32
SCAF11-206ENST00000474828 FGD5Q6ZNL6 1462 aa29.5■■■□□ 2.31
SCAF11-206ENST00000474828 TOP2BQ02880 1626 aa29.49■■■□□ 2.31
SCAF11-206ENST00000474828 BIVM-ERCC5R4GMW8 1640 aa29.49■■■□□ 2.31
SCAF11-206ENST00000474828 SYNJ1O43426 1573 aa29.44■■■□□ 2.3
SCAF11-206ENST00000474828 SOGA1O94964 1423 aa29.43■■■□□ 2.3
SCAF11-206ENST00000474828 ZNF608Q9ULD9 1512 aaPredicted RBP29.39■■■□□ 2.3
SCAF11-206ENST00000474828 RAD54L2Q9Y4B4 1467 aa29.38■■■□□ 2.29
SCAF11-206ENST00000474828 WDR97A6NE52 1622 aa29.34■■■□□ 2.29
SCAF11-206ENST00000474828 ABCA10Q8WWZ4 1543 aa29.3■■■□□ 2.28
SCAF11-206ENST00000474828 EIF4G3O43432 1585 aaKnown RBP29.28■■■□□ 2.28
SCAF11-206ENST00000474828 AQRO60306 1485 aaKnown RBP eCLIP29.23■■■□□ 2.27
SCAF11-206ENST00000474828 TDRD9Q8NDG6 1382 aaKnown RBP29.2■■■□□ 2.26
SCAF11-206ENST00000474828 ABCA5Q8WWZ7 1642 aa29.15■■■□□ 2.26
SCAF11-206ENST00000474828 GAPVD1Q14C86 1478 aa29.1■■■□□ 2.25
SCAF11-206ENST00000474828 GRIN2BQ13224 1484 aa29.09■■■□□ 2.25
SCAF11-206ENST00000474828 MAGI1Q96QZ7 1491 aaPredicted RBP29.01■■■□□ 2.23
SCAF11-206ENST00000474828 PBRM1Q86U86 1689 aa28.97■■■□□ 2.23
SCAF11-206ENST00000474828 SNAPC4Q5SXM2 1469 aa28.97■■■□□ 2.23
SCAF11-206ENST00000474828 ERICH3Q5RHP9 1530 aa28.95■■■□□ 2.23
SCAF11-206ENST00000474828 KIF27Q86VH2 1401 aa28.89■■■□□ 2.22
SCAF11-206ENST00000474828 SYNJ2O15056 1496 aa28.88■■■□□ 2.21
SCAF11-206ENST00000474828 TRIM41Q8WV44 630 aa28.87■■■□□ 2.21
SCAF11-206ENST00000474828 OSCARQ8IYS5 282 aa28.86■■■□□ 2.21
SCAF11-206ENST00000474828 ADAMTS12P58397 1594 aa28.82■■■□□ 2.2
SCAF11-206ENST00000474828 CHD1O14646 1710 aa28.82■■■□□ 2.2
SCAF11-206ENST00000474828 IGF1RP08069 1367 aa28.81■■■□□ 2.2
SCAF11-206ENST00000474828 FHAD1B1AJZ9 1412 aa28.8■■■□□ 2.2
SCAF11-206ENST00000474828 CHIC1Q5VXU3 224 aa28.75■■■□□ 2.19
SCAF11-206ENST00000474828 CHMP7Q8WUX9 453 aaPredicted RBP28.74■■■□□ 2.19
SCAF11-206ENST00000474828 GRIN2AQ12879 1464 aa28.71■■■□□ 2.19
SCAF11-206ENST00000474828 CUL7Q14999 1698 aa28.68■■■□□ 2.18
SCAF11-206ENST00000474828 FBLN2P98095 1184 aa28.68■■■□□ 2.18
SCAF11-206ENST00000474828 RUSC2Q8N2Y8 1516 aa28.67■■■□□ 2.18
SCAF11-206ENST00000474828 CLASP1Q7Z460 1538 aa28.64■■■□□ 2.18
SCAF11-206ENST00000474828 NUP160Q12769 1436 aa28.64■■■□□ 2.18
SCAF11-206ENST00000474828 CARMIL1Q5VZK9 1371 aa28.58■■■□□ 2.17
SCAF11-206ENST00000474828 CEP170Q5SW79 1584 aa28.54■■■□□ 2.16
SCAF11-206ENST00000474828 EEA1Q15075 1411 aa28.53■■■□□ 2.16
SCAF11-206ENST00000474828 PRXQ9BXM0 1461 aa28.48■■■□□ 2.15
SCAF11-206ENST00000474828 RAPGEF2Q9Y4G8 1499 aa28.45■■■□□ 2.14
SCAF11-206ENST00000474828 ARHGEF11O15085 1522 aa28.42■■■□□ 2.14
SCAF11-206ENST00000474828 CSRNP3Q8WYN3 585 aa28.4■■■□□ 2.14
SCAF11-206ENST00000474828 SHROOM2Q13796 1616 aa28.4■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms