RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 RIMS2Q9UQ26 1411 aa21.1■□□□□ 0.97
VAMP4-203ENST00000474047 SOCS7O14512 581 aa21.09■□□□□ 0.97
VAMP4-203ENST00000474047 ZNF326Q5BKZ1 582 aaKnown RBP21.09■□□□□ 0.97
VAMP4-203ENST00000474047 MPHOSPH9Q99550 1183 aa21.09■□□□□ 0.97
VAMP4-203ENST00000474047 FOXD1Q16676 465 aa21.07■□□□□ 0.96
VAMP4-203ENST00000474047 NUTM2DQ5VT03 806 aaPredicted RBP21.07■□□□□ 0.96
VAMP4-203ENST00000474047 RAB3GAP2Q9H2M9 1393 aa21.07■□□□□ 0.96
VAMP4-203ENST00000474047 SLC26A8Q96RN1 970 aa21.06■□□□□ 0.96
VAMP4-203ENST00000474047 TRPM2O94759 1503 aa21.05■□□□□ 0.96
VAMP4-203ENST00000474047 CPS1P31327 1500 aa21.04■□□□□ 0.96
VAMP4-203ENST00000474047 ZFYVE9O95405 1425 aa21.04■□□□□ 0.96
VAMP4-203ENST00000474047 IQSEC2Q5JU85 1478 aa21.03■□□□□ 0.96
VAMP4-203ENST00000474047 CLTCL1P53675 1640 aa21.02■□□□□ 0.96
VAMP4-203ENST00000474047 PLEKHG1Q9ULL1 1385 aa21.01■□□□□ 0.95
VAMP4-203ENST00000474047 KIF1BO60333 1816 aa21.01■□□□□ 0.95
VAMP4-203ENST00000474047 UBAP1LF5GYI3 381 aa20.98■□□□□ 0.95
VAMP4-203ENST00000474047 CCDC144AA2RUR9 1427 aa20.97■□□□□ 0.95
VAMP4-203ENST00000474047 KCNA6P17658 529 aa20.96■□□□□ 0.95
VAMP4-203ENST00000474047 HRCP23327 699 aa20.96■□□□□ 0.95
VAMP4-203ENST00000474047 TBX22Q9Y458 520 aa20.95■□□□□ 0.94
VAMP4-203ENST00000474047 STRCP1A6NGW2 1772 aa20.94■□□□□ 0.94
VAMP4-203ENST00000474047 TOM1O60784 492 aa20.92■□□□□ 0.94
VAMP4-203ENST00000474047 PROSER2Q86WR7 435 aaPredicted RBP20.92■□□□□ 0.94
VAMP4-203ENST00000474047 RPGRIP1LQ68CZ1 1315 aa20.92■□□□□ 0.94
VAMP4-203ENST00000474047 VGFO15240 615 aaPredicted RBP20.92■□□□□ 0.94
VAMP4-203ENST00000474047 RGL3Q3MIN7 710 aa20.92■□□□□ 0.94
VAMP4-203ENST00000474047 LRRC7Q96NW7 1537 aa20.91■□□□□ 0.94
VAMP4-203ENST00000474047 SCAF1Q9H7N4 1312 aaKnown RBP20.91■□□□□ 0.94
VAMP4-203ENST00000474047 ILDR2Q71H61 639 aa20.9■□□□□ 0.94
VAMP4-203ENST00000474047 NEXMIFQ5QGS0 1516 aa20.88■□□□□ 0.93
VAMP4-203ENST00000474047 PIP4K2BP78356 416 aa20.87■□□□□ 0.93
VAMP4-203ENST00000474047 ADAMTS13Q76LX8 1427 aa20.87■□□□□ 0.93
VAMP4-203ENST00000474047 DIP2AQ14689 1571 aa20.87■□□□□ 0.93
VAMP4-203ENST00000474047 TMEM94Q12767 1356 aa20.85■□□□□ 0.93
VAMP4-203ENST00000474047 RBM33Q96EV2 1170 aaKnown RBP20.84■□□□□ 0.93
VAMP4-203ENST00000474047 PIK3R4Q99570 1358 aa20.84■□□□□ 0.93
VAMP4-203ENST00000474047 DISP3Q9P2K9 1392 aa20.84■□□□□ 0.93
VAMP4-203ENST00000474047 CHD2O14647 1828 aaKnown RBP20.84■□□□□ 0.93
VAMP4-203ENST00000474047 NKTRP30414 1462 aaKnown RBP20.83■□□□□ 0.93
VAMP4-203ENST00000474047 C14orf37Q86TY3 774 aa20.83■□□□□ 0.92
VAMP4-203ENST00000474047 AMOTL2Q9Y2J4 779 aa20.83■□□□□ 0.92
VAMP4-203ENST00000474047 SETBP1Q9Y6X0 1596 aa20.83■□□□□ 0.92
VAMP4-203ENST00000474047 NWD1Q149M9 1564 aa20.82■□□□□ 0.92
VAMP4-203ENST00000474047 SPATA31E1Q6ZUB1 1445 aa20.81■□□□□ 0.92
VAMP4-203ENST00000474047 PPLO60437 1756 aa20.8■□□□□ 0.92
VAMP4-203ENST00000474047 TRIM26Q12899 539 aaPredicted RBP20.8■□□□□ 0.92
VAMP4-203ENST00000474047 ANKRD30BQ9BXX2 1392 aa20.79■□□□□ 0.92
VAMP4-203ENST00000474047 NRXN3Q9Y4C0 1643 aa20.79■□□□□ 0.92
VAMP4-203ENST00000474047 XIRP1Q702N8 1843 aaKnown RBP20.77■□□□□ 0.92
VAMP4-203ENST00000474047 METP08581 1390 aa20.77■□□□□ 0.92
VAMP4-203ENST00000474047 MSH6P52701 1360 aa20.77■□□□□ 0.91
VAMP4-203ENST00000474047 ADGRF5Q8IZF2 1346 aa20.76■□□□□ 0.91
VAMP4-203ENST00000474047 PTPRUQ92729 1446 aa20.75■□□□□ 0.91
VAMP4-203ENST00000474047 ALKQ9UM73 1620 aa20.73■□□□□ 0.91
VAMP4-203ENST00000474047 NCOA3Q9Y6Q9 1424 aa20.71■□□□□ 0.91
VAMP4-203ENST00000474047 IFT172Q9UG01 1749 aa20.7■□□□□ 0.9
VAMP4-203ENST00000474047 ATF3P18847 181 aa20.7■□□□□ 0.9
VAMP4-203ENST00000474047 HSPA1LP34931 641 aa20.7■□□□□ 0.9
VAMP4-203ENST00000474047 C19orf44Q9H6X5 657 aa20.7■□□□□ 0.9
VAMP4-203ENST00000474047 KDM2AQ9Y2K7 1162 aa20.7■□□□□ 0.9
VAMP4-203ENST00000474047 DCAF11Q8TEB1 546 aa20.68■□□□□ 0.9
VAMP4-203ENST00000474047 XRN1Q8IZH2 1706 aaKnown RBP20.68■□□□□ 0.9
VAMP4-203ENST00000474047 CADPS2Q86UW7 1296 aa20.67■□□□□ 0.9
VAMP4-203ENST00000474047 SLAIN2Q9P270 581 aa20.67■□□□□ 0.9
VAMP4-203ENST00000474047 STK26Q9P289 416 aa20.66■□□□□ 0.9
VAMP4-203ENST00000474047 PIK3C2GO75747 1445 aa20.65■□□□□ 0.9
VAMP4-203ENST00000474047 SETD1AO15047 1707 aaKnown RBP20.65■□□□□ 0.9
VAMP4-203ENST00000474047 TMEM132EQ6IEE7 984 aa20.64■□□□□ 0.9
VAMP4-203ENST00000474047 MYOM2P54296 1465 aa20.64■□□□□ 0.89
VAMP4-203ENST00000474047 STAC3Q96MF2 364 aa20.64■□□□□ 0.89
VAMP4-203ENST00000474047 C14orf93Q9H972 538 aaKnown RBP20.63■□□□□ 0.89
VAMP4-203ENST00000474047 CFAP70Q5T0N1 1121 aa20.62■□□□□ 0.89
VAMP4-203ENST00000474047 FAM135BQ49AJ0 1406 aa20.62■□□□□ 0.89
VAMP4-203ENST00000474047 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.62■□□□□ 0.89
VAMP4-203ENST00000474047 ROBO2Q9HCK4 1378 aa20.6■□□□□ 0.89
VAMP4-203ENST00000474047 PTCH1Q13635 1447 aa20.6■□□□□ 0.89
VAMP4-203ENST00000474047 DHX57Q6P158 1386 aaKnown RBP20.59■□□□□ 0.89
VAMP4-203ENST00000474047 NRXN1Q9ULB1 1477 aa20.59■□□□□ 0.89
VAMP4-203ENST00000474047 LRPPRCP42704 1394 aaKnown RBP20.58■□□□□ 0.89
VAMP4-203ENST00000474047 ADGRL3Q9HAR2 1447 aa20.57■□□□□ 0.88
VAMP4-203ENST00000474047 NEUROD1Q13562 356 aa20.57■□□□□ 0.88
VAMP4-203ENST00000474047 ROBO1Q9Y6N7 1651 aa20.57■□□□□ 0.88
VAMP4-203ENST00000474047 DCCP43146 1447 aa20.57■□□□□ 0.88
VAMP4-203ENST00000474047 LAMC1P11047 1609 aa20.56■□□□□ 0.88
VAMP4-203ENST00000474047 ABCC11Q96J66 1382 aa20.55■□□□□ 0.88
VAMP4-203ENST00000474047 YTHDC2Q9H6S0 1430 aaKnown RBP20.55■□□□□ 0.88
VAMP4-203ENST00000474047 SIN3AQ96ST3 1273 aa20.55■□□□□ 0.88
VAMP4-203ENST00000474047 WAPLQ7Z5K2 1190 aa20.54■□□□□ 0.88
VAMP4-203ENST00000474047 PRAG1Q86YV5 1406 aa20.53■□□□□ 0.88
VAMP4-203ENST00000474047 ASXL1Q8IXJ9 1541 aa20.52■□□□□ 0.88
VAMP4-203ENST00000474047 NALCNQ8IZF0 1738 aa20.52■□□□□ 0.88
VAMP4-203ENST00000474047 TECPR2O15040 1411 aa20.51■□□□□ 0.87
VAMP4-203ENST00000474047 POGKQ9P215 609 aa20.5■□□□□ 0.87
VAMP4-203ENST00000474047 SIRT1Q96EB6 747 aa20.5■□□□□ 0.87
VAMP4-203ENST00000474047 BRINP3Q76B58 766 aa20.49■□□□□ 0.87
VAMP4-203ENST00000474047 MST1RQ04912 1400 aa20.49■□□□□ 0.87
VAMP4-203ENST00000474047 KNDC1Q76NI1 1749 aa20.49■□□□□ 0.87
VAMP4-203ENST00000474047 SAFB2Q14151 953 aaKnown RBP eCLIP20.48■□□□□ 0.87
VAMP4-203ENST00000474047 TRAK1Q9UPV9 953 aa20.48■□□□□ 0.87
VAMP4-203ENST00000474047 L3MBTL2Q969R5 705 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms