RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 BCORL1Q5H9F3 1711 aa8.64□□□□□ -1.03
USP39-213ENST00000467885 CD44P16070 742 aaKnown RBP8.64□□□□□ -1.03
USP39-213ENST00000467885 ZEB1P37275 1124 aaPredicted RBP8.64□□□□□ -1.03
USP39-213ENST00000467885 SLC52A1Q9NWF4 448 aa8.64□□□□□ -1.03
USP39-213ENST00000467885 NOS1P29475 1434 aa8.63□□□□□ -1.03
USP39-213ENST00000467885 DEPDC5O75140 1603 aa8.63□□□□□ -1.03
USP39-213ENST00000467885 RGL3Q3MIN7 710 aa8.63□□□□□ -1.03
USP39-213ENST00000467885 ABCC3O15438 1527 aa8.63□□□□□ -1.03
USP39-213ENST00000467885 RNF17Q9BXT8 1623 aaKnown RBP8.62□□□□□ -1.03
USP39-213ENST00000467885 POTEIP0CG38 1075 aa8.62□□□□□ -1.03
USP39-213ENST00000467885 PRDM15P57071 1507 aaPredicted RBP8.62□□□□□ -1.03
USP39-213ENST00000467885 IQGAP3Q86VI3 1631 aa8.62□□□□□ -1.03
USP39-213ENST00000467885 CNTLNQ9NXG0 1405 aa8.61□□□□□ -1.03
USP39-213ENST00000467885 RPRD2Q5VT52 1461 aaKnown RBP8.6□□□□□ -1.03
USP39-213ENST00000467885 NBPF8Q3BBV2 869 aa8.59□□□□□ -1.03
USP39-213ENST00000467885 DCAF11Q8TEB1 546 aa8.59□□□□□ -1.03
USP39-213ENST00000467885 KDM2AQ9Y2K7 1162 aa8.59□□□□□ -1.03
USP39-213ENST00000467885 CHGAP10645 457 aaKnown RBP8.58□□□□□ -1.04
USP39-213ENST00000467885 STAC3Q96MF2 364 aa8.58□□□□□ -1.04
USP39-213ENST00000467885 CCDC144AA2RUR9 1427 aa8.57□□□□□ -1.04
USP39-213ENST00000467885 SPATA31E1Q6ZUB1 1445 aa8.57□□□□□ -1.04
USP39-213ENST00000467885 RPGRIP1LQ68CZ1 1315 aa8.56□□□□□ -1.04
USP39-213ENST00000467885 E9PCH4 1651 aa8.56□□□□□ -1.04
USP39-213ENST00000467885 TET3O43151 1660 aa8.56□□□□□ -1.04
USP39-213ENST00000467885 EFCAB6Q5THR3 1501 aa8.56□□□□□ -1.04
USP39-213ENST00000467885 TNRQ92752 1358 aa8.56□□□□□ -1.04
USP39-213ENST00000467885 ERVK-7P63135 1459 aa8.56□□□□□ -1.04
USP39-213ENST00000467885 ADAMTSL3P82987 1691 aa8.56□□□□□ -1.04
USP39-213ENST00000467885 ZNF326Q5BKZ1 582 aaKnown RBP8.55□□□□□ -1.04
USP39-213ENST00000467885 THEMISQ8N1K5 641 aaPredicted RBP8.55□□□□□ -1.04
USP39-213ENST00000467885 PTPRMP28827 1452 aa8.54□□□□□ -1.04
USP39-213ENST00000467885 TONSLQ96HA7 1378 aa8.54□□□□□ -1.04
USP39-213ENST00000467885 VGFO15240 615 aaPredicted RBP8.54□□□□□ -1.04
USP39-213ENST00000467885 LTKP29376 864 aa8.54□□□□□ -1.04
USP39-213ENST00000467885 CLCN6P51797 869 aa8.54□□□□□ -1.04
USP39-213ENST00000467885 NUTM2DQ5VT03 806 aaPredicted RBP8.54□□□□□ -1.04
USP39-213ENST00000467885 STAG3Q9UJ98 1225 aa8.54□□□□□ -1.04
USP39-213ENST00000467885 ADGRF5Q8IZF2 1346 aa8.54□□□□□ -1.04
USP39-213ENST00000467885 CLTCQ00610 1675 aaKnown RBP8.53□□□□□ -1.04
USP39-213ENST00000467885 HDGFP51858 240 aaKnown RBP8.53□□□□□ -1.04
USP39-213ENST00000467885 CEP152O94986 1710 aa8.53□□□□□ -1.04
USP39-213ENST00000467885 TRPM2O94759 1503 aa8.53□□□□□ -1.04
USP39-213ENST00000467885 SPATA31D1Q6ZQQ2 1576 aa8.52□□□□□ -1.04
USP39-213ENST00000467885 UGGT1Q9NYU2 1555 aa8.52□□□□□ -1.04
USP39-213ENST00000467885 CAMSAP1Q5T5Y3 1602 aa8.52□□□□□ -1.05
USP39-213ENST00000467885 NBPF1Q3BBV0 1214 aa8.52□□□□□ -1.05
USP39-213ENST00000467885 TXNDC2Q86VQ3 553 aa8.52□□□□□ -1.05
USP39-213ENST00000467885 C14orf93Q9H972 538 aaKnown RBP8.52□□□□□ -1.05
USP39-213ENST00000467885 SYNMO15061 1565 aa8.52□□□□□ -1.05
USP39-213ENST00000467885 CFAP70Q5T0N1 1121 aa8.51□□□□□ -1.05
USP39-213ENST00000467885 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.51□□□□□ -1.05
USP39-213ENST00000467885 CREBZFQ9NS37 354 aa8.51□□□□□ -1.05
USP39-213ENST00000467885 A2ML1A8K2U0 1454 aa8.51□□□□□ -1.05
USP39-213ENST00000467885 ZC3H13Q5T200 1668 aaKnown RBP8.5□□□□□ -1.05
USP39-213ENST00000467885 ZNF579Q8NAF0 562 aaKnown RBP8.5□□□□□ -1.05
USP39-213ENST00000467885 CFAP65Q6ZU64 1925 aaKnown RBP8.5□□□□□ -1.05
USP39-213ENST00000467885 MADDQ8WXG6 1647 aa8.5□□□□□ -1.05
USP39-213ENST00000467885 TMEM2Q9UHN6 1383 aa8.49□□□□□ -1.05
USP39-213ENST00000467885 ZFYVE9O95405 1425 aa8.49□□□□□ -1.05
USP39-213ENST00000467885 UHRF1BP1Q6BDS2 1440 aa8.49□□□□□ -1.05
USP39-213ENST00000467885 ZRANB1Q9UGI0 708 aa8.49□□□□□ -1.05
USP39-213ENST00000467885 CLTCL1P53675 1640 aa8.49□□□□□ -1.05
USP39-213ENST00000467885 NLRP1Q9C000 1473 aa8.49□□□□□ -1.05
USP39-213ENST00000467885 ANKLE2Q86XL3 938 aa8.48□□□□□ -1.05
USP39-213ENST00000467885 DCBLD2Q96PD2 775 aa8.48□□□□□ -1.05
USP39-213ENST00000467885 EID1Q9Y6B2 187 aa8.48□□□□□ -1.05
USP39-213ENST00000467885 MROH2AA6NES4 1674 aa8.48□□□□□ -1.05
USP39-213ENST00000467885 PREX1Q8TCU6 1659 aa8.48□□□□□ -1.05
USP39-213ENST00000467885 NEURL4Q96JN8 1562 aa8.48□□□□□ -1.05
USP39-213ENST00000467885 PIK3C2BO00750 1634 aa8.47□□□□□ -1.05
USP39-213ENST00000467885 C3P01024 1663 aa8.47□□□□□ -1.05
USP39-213ENST00000467885 SLC24A1O60721 1099 aa8.47□□□□□ -1.05
USP39-213ENST00000467885 TMEM132EQ6IEE7 984 aa8.47□□□□□ -1.05
USP39-213ENST00000467885 TBX22Q9Y458 520 aa8.47□□□□□ -1.05
USP39-213ENST00000467885 TMEM131LA2VDJ0 1609 aa8.47□□□□□ -1.05
USP39-213ENST00000467885 RIMS2Q9UQ26 1411 aa8.46□□□□□ -1.05
USP39-213ENST00000467885 SPHKAPQ2M3C7 1700 aa8.46□□□□□ -1.05
USP39-213ENST00000467885 HSPA2P54652 639 aa8.46□□□□□ -1.06
USP39-213ENST00000467885 NCKAP5LQ9HCH0 1330 aa8.46□□□□□ -1.06
USP39-213ENST00000467885 PRAG1Q86YV5 1406 aa8.46□□□□□ -1.06
USP39-213ENST00000467885 CARD11Q9BXL7 1154 aa8.45□□□□□ -1.06
USP39-213ENST00000467885 RIMS1Q86UR5 1692 aaKnown RBP8.45□□□□□ -1.06
USP39-213ENST00000467885 FER1L4A9Z1Z3 1794 aa8.45□□□□□ -1.06
USP39-213ENST00000467885 NRXN1Q9ULB1 1477 aa8.45□□□□□ -1.06
USP39-213ENST00000467885 ADGRB3O60242 1522 aa8.44□□□□□ -1.06
USP39-213ENST00000467885 SETD1BQ9UPS6 1966 aaKnown RBP8.44□□□□□ -1.06
USP39-213ENST00000467885 SLC26A8Q96RN1 970 aa8.44□□□□□ -1.06
USP39-213ENST00000467885 HIRIP3Q9BW71 556 aaPredicted RBP8.44□□□□□ -1.06
USP39-213ENST00000467885 ARHGAP23Q9P227 1491 aa8.44□□□□□ -1.06
USP39-213ENST00000467885 SPDYE4A6NLX3 237 aa8.43□□□□□ -1.06
USP39-213ENST00000467885 GALR2O43603 387 aaPredicted RBP8.43□□□□□ -1.06
USP39-213ENST00000467885 HSPA5P11021 654 aaKnown RBP8.43□□□□□ -1.06
USP39-213ENST00000467885 SIRT1Q96EB6 747 aa8.43□□□□□ -1.06
USP39-213ENST00000467885 ST20-MTHFSA0A0A6YYL1 179 aa8.42□□□□□ -1.06
USP39-213ENST00000467885 C11orf95C9JLR9 678 aaPredicted RBP8.42□□□□□ -1.06
USP39-213ENST00000467885 EIF4G2P78344 907 aaKnown RBP eCLIP8.42□□□□□ -1.06
USP39-213ENST00000467885 BCANQ96GW7 911 aa8.42□□□□□ -1.06
USP39-213ENST00000467885 GPRASP1Q5JY77 1395 aa8.42□□□□□ -1.06
USP39-213ENST00000467885 PLEKHG1Q9ULL1 1385 aa8.42□□□□□ -1.06
USP39-213ENST00000467885 SLIT1O75093 1534 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms