RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 AEBP2Q6ZN18 517 aaPredicted RBP16.97■□□□□ 0.31
USP39-213ENST00000467885 CHIC1Q5VXU3 224 aa15.9■□□□□ 0.14
USP39-213ENST00000467885 SENP3Q9H4L4 574 aaPredicted RBP14.48□□□□□ -0.09
USP39-213ENST00000467885 PHF23Q9BUL5 403 aaPredicted RBP14.27□□□□□ -0.13
USP39-213ENST00000467885 NISCHQ9Y2I1 1504 aa13.85□□□□□ -0.19
USP39-213ENST00000467885 FOXD1Q16676 465 aa13.53□□□□□ -0.24
USP39-213ENST00000467885 POTEDQ86YR6 584 aa12.79□□□□□ -0.36
USP39-213ENST00000467885 MSH5O43196 834 aa12.72□□□□□ -0.37
USP39-213ENST00000467885 PLPPR3Q6T4P5 718 aa12.59□□□□□ -0.39
USP39-213ENST00000467885 PIAS4Q8N2W9 510 aaPredicted RBP12.58□□□□□ -0.4
USP39-213ENST00000467885 PPP6R1Q9UPN7 881 aa12.51□□□□□ -0.41
USP39-213ENST00000467885 ADRA2BP18089 450 aa12.45□□□□□ -0.42
USP39-213ENST00000467885 CCDC180Q9P1Z9 1646 aa12.01□□□□□ -0.49
USP39-213ENST00000467885 ABCC9O60706 1549 aa11.7□□□□□ -0.54
USP39-213ENST00000467885 DCAF8L2P0C7V8 631 aa11.64□□□□□ -0.55
USP39-213ENST00000467885 ZCCHC6Q5VYS8 1495 aaKnown RBP11.54□□□□□ -0.56
USP39-213ENST00000467885 MAPK8IP2Q13387 824 aaPredicted RBP11.5□□□□□ -0.57
USP39-213ENST00000467885 DMRT2Q9Y5R5 561 aa11.46□□□□□ -0.57
USP39-213ENST00000467885 DCAF1Q9Y4B6 1507 aa11.44□□□□□ -0.58
USP39-213ENST00000467885 MYO15BQ96JP2 1530 aa11.4□□□□□ -0.59
USP39-213ENST00000467885 NACADO15069 1562 aa11.35□□□□□ -0.59
USP39-213ENST00000467885 SCAF1Q9H7N4 1312 aaKnown RBP11.35□□□□□ -0.59
USP39-213ENST00000467885 RB1CC1Q8TDY2 1594 aa11.27□□□□□ -0.61
USP39-213ENST00000467885 SHROOM4Q9ULL8 1493 aa11.16□□□□□ -0.62
USP39-213ENST00000467885 PABPN1Q86U42 306 aaKnown RBP eCLIP11.11□□□□□ -0.63
USP39-213ENST00000467885 SCRIBQ14160 1630 aa11.05□□□□□ -0.64
USP39-213ENST00000467885 CACNB1Q02641 598 aaPredicted RBP11.04□□□□□ -0.64
USP39-213ENST00000467885 PPP4R3CPQ6ZMV5 832 aa11.02□□□□□ -0.65
USP39-213ENST00000467885 BICRAQ9NZM4 1560 aa10.99□□□□□ -0.65
USP39-213ENST00000467885 DCAF8L1A6NGE4 600 aa10.97□□□□□ -0.65
USP39-213ENST00000467885 HOXD11P31277 338 aaPredicted RBP10.96□□□□□ -0.65
USP39-213ENST00000467885 UNC13AQ9UPW8 1703 aa10.92□□□□□ -0.66
USP39-213ENST00000467885 CNKSR2Q8WXI2 1034 aa10.85□□□□□ -0.67
USP39-213ENST00000467885 RNF39Q9H2S5 420 aa10.85□□□□□ -0.67
USP39-213ENST00000467885 CECR2Q9BXF3 1484 aa10.83□□□□□ -0.68
USP39-213ENST00000467885 RNF216Q9NWF9 866 aaPredicted RBP10.81□□□□□ -0.68
USP39-213ENST00000467885 DNAJC5BQ9UF47 199 aa10.72□□□□□ -0.69
USP39-213ENST00000467885 RSF1Q96T23 1441 aaPredicted RBP10.72□□□□□ -0.69
USP39-213ENST00000467885 SUPT5HO00267 1087 aaKnown RBP10.71□□□□□ -0.69
USP39-213ENST00000467885 MROH2BQ7Z745 1585 aa10.7□□□□□ -0.7
USP39-213ENST00000467885 C1QBPQ07021 282 aaKnown RBP10.67□□□□□ -0.7
USP39-213ENST00000467885 BAZ1AQ9NRL2 1556 aaPredicted RBP10.65□□□□□ -0.7
USP39-213ENST00000467885 EIF4G1Q04637 1599 aaKnown RBP10.63□□□□□ -0.71
USP39-213ENST00000467885 SMARCA4P51532 1647 aa10.61□□□□□ -0.71
USP39-213ENST00000467885 ATAD2BQ9ULI0 1458 aa10.6□□□□□ -0.71
USP39-213ENST00000467885 NCAPD3P42695 1498 aa10.58□□□□□ -0.72
USP39-213ENST00000467885 WIZO95785 1651 aa10.53□□□□□ -0.72
USP39-213ENST00000467885 PEG3Q9GZU2 1588 aa10.52□□□□□ -0.72
USP39-213ENST00000467885 CC2D2AQ9P2K1 1620 aa10.52□□□□□ -0.73
USP39-213ENST00000467885 NCBP3Q53F19 620 aaKnown RBP10.51□□□□□ -0.73
USP39-213ENST00000467885 SMARCA2P51531 1590 aa10.5□□□□□ -0.73
USP39-213ENST00000467885 BAZ1BQ9UIG0 1483 aaKnown RBP10.45□□□□□ -0.74
USP39-213ENST00000467885 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.42□□□□□ -0.744e-6■□□□□ 10
USP39-213ENST00000467885 TOP2AP11388 1531 aaKnown RBP10.41□□□□□ -0.74
USP39-213ENST00000467885 CCDC88BA6NC98 1476 aa10.41□□□□□ -0.74
USP39-213ENST00000467885 HMGXB3Q12766 1538 aa10.4□□□□□ -0.74
USP39-213ENST00000467885 NPM3O75607 178 aaKnown RBP10.39□□□□□ -0.75
USP39-213ENST00000467885 CADPSQ9ULU8 1353 aa10.3□□□□□ -0.76
USP39-213ENST00000467885 CFTRP13569 1480 aa10.25□□□□□ -0.77
USP39-213ENST00000467885 NESP48681 1621 aa10.22□□□□□ -0.77
USP39-213ENST00000467885 U3KPZ7 1027 aaPredicted RBP10.21□□□□□ -0.77
USP39-213ENST00000467885 PDS5BQ9NTI5 1447 aa10.14□□□□□ -0.79
USP39-213ENST00000467885 LAMC3Q9Y6N6 1575 aa10.13□□□□□ -0.79
USP39-213ENST00000467885 SPINK5Q9NQ38 1064 aaPredicted RBP10.12□□□□□ -0.79
USP39-213ENST00000467885 FANCD2Q9BXW9 1451 aa10.1□□□□□ -0.79
USP39-213ENST00000467885 TRIM41Q8WV44 630 aa10.1□□□□□ -0.79
USP39-213ENST00000467885 DSG3P32926 999 aa10.09□□□□□ -0.79
USP39-213ENST00000467885 CAPN15O75808 1086 aa10.08□□□□□ -0.8
USP39-213ENST00000467885 WRNQ14191 1432 aaPredicted RBP eCLIP10.04□□□□□ -0.8
USP39-213ENST00000467885 ABCC8Q09428 1581 aa10.02□□□□□ -0.81
USP39-213ENST00000467885 KCNA4P22459 653 aa10.02□□□□□ -0.81
USP39-213ENST00000467885 CEP164Q9UPV0 1460 aa10.02□□□□□ -0.81
USP39-213ENST00000467885 URB2Q14146 1524 aaKnown RBP10□□□□□ -0.81
USP39-213ENST00000467885 ERCC6Q03468 1493 aa9.99□□□□□ -0.81
USP39-213ENST00000467885 CUX1P39880 1505 aa9.99□□□□□ -0.81
USP39-213ENST00000467885 SLC4A2P04920 1241 aa9.99□□□□□ -0.81
USP39-213ENST00000467885 POTEHQ6S545 545 aa9.97□□□□□ -0.81
USP39-213ENST00000467885 MRC2Q9UBG0 1479 aa9.97□□□□□ -0.81
USP39-213ENST00000467885 TOPBP1Q92547 1522 aa9.97□□□□□ -0.81
USP39-213ENST00000467885 SOGA1O94964 1423 aa9.95□□□□□ -0.82
USP39-213ENST00000467885 KIF21AQ7Z4S6 1674 aa9.93□□□□□ -0.82
USP39-213ENST00000467885 SYNJ1O43426 1573 aa9.93□□□□□ -0.82
USP39-213ENST00000467885 TOP2BQ02880 1626 aa9.92□□□□□ -0.82
USP39-213ENST00000467885 DNMBPQ6XZF7 1577 aa9.91□□□□□ -0.82
USP39-213ENST00000467885 CUX2O14529 1486 aa9.91□□□□□ -0.82
USP39-213ENST00000467885 FGD5Q6ZNL6 1462 aa9.91□□□□□ -0.82
USP39-213ENST00000467885 RAD54L2Q9Y4B4 1467 aa9.91□□□□□ -0.82
USP39-213ENST00000467885 PRDM2Q13029 1718 aa9.9□□□□□ -0.82
USP39-213ENST00000467885 FAM9AQ8IZU1 332 aaPredicted RBP9.9□□□□□ -0.82
USP39-213ENST00000467885 POLA1P09884 1462 aaPredicted RBP9.9□□□□□ -0.83
USP39-213ENST00000467885 WDR62O43379 1518 aa9.89□□□□□ -0.83
USP39-213ENST00000467885 CSRNP3Q8WYN3 585 aa9.89□□□□□ -0.83
USP39-213ENST00000467885 RUSC2Q8N2Y8 1516 aa9.88□□□□□ -0.83
USP39-213ENST00000467885 TRHP20396 242 aaPredicted RBP9.88□□□□□ -0.83
USP39-213ENST00000467885 TDRD9Q8NDG6 1382 aaKnown RBP9.88□□□□□ -0.83
USP39-213ENST00000467885 BIVM-ERCC5R4GMW8 1640 aa9.87□□□□□ -0.83
USP39-213ENST00000467885 IGF1RP08069 1367 aa9.87□□□□□ -0.83
USP39-213ENST00000467885 THOC2Q8NI27 1593 aaKnown RBP9.86□□□□□ -0.83
USP39-213ENST00000467885 ABCB7O75027 752 aa9.85□□□□□ -0.83
USP39-213ENST00000467885 APLP2Q06481 763 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms