RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 RIMS2Q9UQ26 1411 aa17.22■□□□□ 0.35
CUX1-207ENST00000465461 MED14O60244 1454 aa17.22■□□□□ 0.35
CUX1-207ENST00000465461 ZFYVE9O95405 1425 aa17.21■□□□□ 0.34
CUX1-207ENST00000465461 IQGAP1P46940 1657 aa17.2■□□□□ 0.34
CUX1-207ENST00000465461 PPP1R15AO75807 674 aaPredicted RBP17.2■□□□□ 0.34
CUX1-207ENST00000465461 BCANQ96GW7 911 aa17.2■□□□□ 0.34
CUX1-207ENST00000465461 KIF1BO60333 1816 aa17.19■□□□□ 0.34
CUX1-207ENST00000465461 SLC26A8Q96RN1 970 aa17.18■□□□□ 0.34
CUX1-207ENST00000465461 CCDC144AA2RUR9 1427 aa17.18■□□□□ 0.34
CUX1-207ENST00000465461 RGL3Q3MIN7 710 aa17.17■□□□□ 0.34
CUX1-207ENST00000465461 HDGFP51858 240 aaKnown RBP17.16■□□□□ 0.34
CUX1-207ENST00000465461 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.15■□□□□ 0.34
CUX1-207ENST00000465461 ANKRD30BQ9BXX2 1392 aa17.15■□□□□ 0.34
CUX1-207ENST00000465461 LTBP4Q8N2S1 1624 aa17.14■□□□□ 0.33
CUX1-207ENST00000465461 CERKQ8TCT0 537 aa17.14■□□□□ 0.33
CUX1-207ENST00000465461 PCGF6Q9BYE7 350 aa17.14■□□□□ 0.33
CUX1-207ENST00000465461 NEXMIFQ5QGS0 1516 aa17.13■□□□□ 0.33
CUX1-207ENST00000465461 PLEKHG1Q9ULL1 1385 aa17.13■□□□□ 0.33
CUX1-207ENST00000465461 SPATA31E1Q6ZUB1 1445 aa17.11■□□□□ 0.33
CUX1-207ENST00000465461 STRCP1A6NGW2 1772 aa17.1■□□□□ 0.33
CUX1-207ENST00000465461 ADAMTS13Q76LX8 1427 aa17.08■□□□□ 0.32
CUX1-207ENST00000465461 DHX57Q6P158 1386 aaKnown RBP17.06■□□□□ 0.32
CUX1-207ENST00000465461 RPGRIP1LQ68CZ1 1315 aa17.06■□□□□ 0.32
CUX1-207ENST00000465461 ADGRF5Q8IZF2 1346 aa17.06■□□□□ 0.32
CUX1-207ENST00000465461 RBM33Q96EV2 1170 aaKnown RBP17.06■□□□□ 0.32
CUX1-207ENST00000465461 PPLO60437 1756 aa17.06■□□□□ 0.32
CUX1-207ENST00000465461 NRXN3Q9Y4C0 1643 aa17.06■□□□□ 0.32
CUX1-207ENST00000465461 VGFO15240 615 aaPredicted RBP17.05■□□□□ 0.32
CUX1-207ENST00000465461 TBX22Q9Y458 520 aa17.05■□□□□ 0.32
CUX1-207ENST00000465461 KCNA6P17658 529 aa17.04■□□□□ 0.32
CUX1-207ENST00000465461 SIN3AQ96ST3 1273 aa17.04■□□□□ 0.32
CUX1-207ENST00000465461 CPS1P31327 1500 aa17.02■□□□□ 0.32
CUX1-207ENST00000465461 KDM2AQ9Y2K7 1162 aa17.02■□□□□ 0.32
CUX1-207ENST00000465461 SETBP1Q9Y6X0 1596 aa17.02■□□□□ 0.31
CUX1-207ENST00000465461 METP08581 1390 aa17.02■□□□□ 0.31
CUX1-207ENST00000465461 IFT172Q9UG01 1749 aa17.01■□□□□ 0.31
CUX1-207ENST00000465461 PTPRUQ92729 1446 aa17.01■□□□□ 0.31
CUX1-207ENST00000465461 LRRC7Q96NW7 1537 aa17.01■□□□□ 0.31
CUX1-207ENST00000465461 NEUROD1Q13562 356 aa17■□□□□ 0.31
CUX1-207ENST00000465461 ILDR1Q86SU0 546 aaPredicted RBP17■□□□□ 0.31
CUX1-207ENST00000465461 DCAF11Q8TEB1 546 aa17■□□□□ 0.31
CUX1-207ENST00000465461 CHD2O14647 1828 aaKnown RBP16.99■□□□□ 0.31
CUX1-207ENST00000465461 PROSER2Q86WR7 435 aaPredicted RBP16.99■□□□□ 0.31
CUX1-207ENST00000465461 AMOTL2Q9Y2J4 779 aa16.99■□□□□ 0.31
CUX1-207ENST00000465461 DIP2AQ14689 1571 aa16.98■□□□□ 0.31
CUX1-207ENST00000465461 ALKQ9UM73 1620 aa16.98■□□□□ 0.31
CUX1-207ENST00000465461 FBXO41Q8TF61 875 aa16.97■□□□□ 0.31
CUX1-207ENST00000465461 NWD1Q149M9 1564 aa16.97■□□□□ 0.31
CUX1-207ENST00000465461 TMEM94Q12767 1356 aa16.96■□□□□ 0.31
CUX1-207ENST00000465461 UBAP1LF5GYI3 381 aa16.95■□□□□ 0.3
CUX1-207ENST00000465461 TMEM132EQ6IEE7 984 aa16.95■□□□□ 0.3
CUX1-207ENST00000465461 XIRP1Q702N8 1843 aaKnown RBP16.95■□□□□ 0.3
CUX1-207ENST00000465461 SETD1AO15047 1707 aaKnown RBP16.95■□□□□ 0.3
CUX1-207ENST00000465461 PIK3R4Q99570 1358 aa16.94■□□□□ 0.3
CUX1-207ENST00000465461 CFAP70Q5T0N1 1121 aa16.94■□□□□ 0.3
CUX1-207ENST00000465461 PIK3C2GO75747 1445 aa16.94■□□□□ 0.3
CUX1-207ENST00000465461 IQSEC2Q5JU85 1478 aa16.93■□□□□ 0.3
CUX1-207ENST00000465461 MYOM2P54296 1465 aa16.93■□□□□ 0.3
CUX1-207ENST00000465461 STK26Q9P289 416 aa16.92■□□□□ 0.3
CUX1-207ENST00000465461 NKTRP30414 1462 aaKnown RBP16.92■□□□□ 0.3
CUX1-207ENST00000465461 NRXN1Q9ULB1 1477 aa16.92■□□□□ 0.3
CUX1-207ENST00000465461 C14orf93Q9H972 538 aaKnown RBP16.91■□□□□ 0.3
CUX1-207ENST00000465461 PIP4K2BP78356 416 aa16.9■□□□□ 0.3
CUX1-207ENST00000465461 L3MBTL2Q969R5 705 aa16.9■□□□□ 0.3
CUX1-207ENST00000465461 XRN1Q8IZH2 1706 aaKnown RBP16.9■□□□□ 0.3
CUX1-207ENST00000465461 C14orf37Q86TY3 774 aa16.89■□□□□ 0.29
CUX1-207ENST00000465461 ASXL1Q8IXJ9 1541 aa16.89■□□□□ 0.29
CUX1-207ENST00000465461 SCAF1Q9H7N4 1312 aaKnown RBP16.89■□□□□ 0.29
CUX1-207ENST00000465461 TOM1O60784 492 aa16.87■□□□□ 0.29
CUX1-207ENST00000465461 ROBO2Q9HCK4 1378 aa16.87■□□□□ 0.29
CUX1-207ENST00000465461 WAPLQ7Z5K2 1190 aa16.84■□□□□ 0.29
CUX1-207ENST00000465461 MSH6P52701 1360 aa16.84■□□□□ 0.29
CUX1-207ENST00000465461 LRPPRCP42704 1394 aaKnown RBP16.83■□□□□ 0.28
CUX1-207ENST00000465461 YTHDC2Q9H6S0 1430 aaKnown RBP16.83■□□□□ 0.28
CUX1-207ENST00000465461 PLEKHH1Q9ULM0 1364 aa16.82■□□□□ 0.28
CUX1-207ENST00000465461 STAC3Q96MF2 364 aa16.82■□□□□ 0.28
CUX1-207ENST00000465461 PRAG1Q86YV5 1406 aa16.81■□□□□ 0.28
CUX1-207ENST00000465461 NBPF1Q3BBV0 1214 aa16.81■□□□□ 0.28
CUX1-207ENST00000465461 LAMC1P11047 1609 aa16.81■□□□□ 0.28
CUX1-207ENST00000465461 PTCH1Q13635 1447 aa16.8■□□□□ 0.28
CUX1-207ENST00000465461 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.8■□□□□ 0.28
CUX1-207ENST00000465461 C19orf44Q9H6X5 657 aa16.8■□□□□ 0.28
CUX1-207ENST00000465461 TRAK1Q9UPV9 953 aa16.8■□□□□ 0.28
CUX1-207ENST00000465461 ADGRB1O14514 1584 aa16.8■□□□□ 0.28
CUX1-207ENST00000465461 NCOA3Q9Y6Q9 1424 aa16.79■□□□□ 0.28
CUX1-207ENST00000465461 TONSLQ96HA7 1378 aa16.79■□□□□ 0.28
CUX1-207ENST00000465461 ABCC11Q96J66 1382 aa16.79■□□□□ 0.28
CUX1-207ENST00000465461 SAFB2Q14151 953 aaKnown RBP eCLIP16.79■□□□□ 0.28
CUX1-207ENST00000465461 CCER1Q8TC90 406 aaPredicted RBP16.79■□□□□ 0.28
CUX1-207ENST00000465461 ATF3P18847 181 aa16.78■□□□□ 0.28
CUX1-207ENST00000465461 NBPF8Q3BBV2 869 aa16.78■□□□□ 0.28
CUX1-207ENST00000465461 NALCNQ8IZF0 1738 aa16.78■□□□□ 0.28
CUX1-207ENST00000465461 SLAIN2Q9P270 581 aa16.77■□□□□ 0.28
CUX1-207ENST00000465461 TECPR2O15040 1411 aa16.77■□□□□ 0.27
CUX1-207ENST00000465461 KNDC1Q76NI1 1749 aa16.76■□□□□ 0.27
CUX1-207ENST00000465461 PRAM1Q96QH2 718 aa16.76■□□□□ 0.27
CUX1-207ENST00000465461 ADGRL3Q9HAR2 1447 aa16.76■□□□□ 0.27
CUX1-207ENST00000465461 HSPA1LP34931 641 aa16.75■□□□□ 0.27
CUX1-207ENST00000465461 CADPS2Q86UW7 1296 aa16.75■□□□□ 0.27
CUX1-207ENST00000465461 POGKQ9P215 609 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms