RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 NISCHQ9Y2I1 1504 aa28.14■■■□□ 2.1
CUX1-207ENST00000465461 CCDC180Q9P1Z9 1646 aa24.91■■□□□ 1.58
CUX1-207ENST00000465461 ABCC9O60706 1549 aa24.46■■□□□ 1.51
CUX1-207ENST00000465461 DCAF8L2P0C7V8 631 aa23.66■■□□□ 1.38
CUX1-207ENST00000465461 RB1CC1Q8TDY2 1594 aa23.45■■□□□ 1.34
CUX1-207ENST00000465461 ZCCHC6Q5VYS8 1495 aaKnown RBP23.45■■□□□ 1.34
CUX1-207ENST00000465461 NACADO15069 1562 aa23.43■■□□□ 1.34
CUX1-207ENST00000465461 MYO15BQ96JP2 1530 aa23.24■■□□□ 1.31
CUX1-207ENST00000465461 DCAF1Q9Y4B6 1507 aa23.2■■□□□ 1.3
CUX1-207ENST00000465461 UNC13AQ9UPW8 1703 aa22.98■■□□□ 1.27
CUX1-207ENST00000465461 PABPN1Q86U42 306 aaKnown RBP eCLIP22.94■■□□□ 1.26
CUX1-207ENST00000465461 SCRIBQ14160 1630 aa22.87■■□□□ 1.25
CUX1-207ENST00000465461 BICRAQ9NZM4 1560 aa22.8■■□□□ 1.24
CUX1-207ENST00000465461 DNAJC5BQ9UF47 199 aa22.46■■□□□ 1.19
CUX1-207ENST00000465461 SHROOM4Q9ULL8 1493 aa22.45■■□□□ 1.18
CUX1-207ENST00000465461 EIF4G1Q04637 1599 aaKnown RBP22.17■■□□□ 1.14
CUX1-207ENST00000465461 CC2D2AQ9P2K1 1620 aa22.09■■□□□ 1.13
CUX1-207ENST00000465461 CECR2Q9BXF3 1484 aa22.01■■□□□ 1.11
CUX1-207ENST00000465461 SMARCA4P51532 1647 aa21.83■■□□□ 1.08
CUX1-207ENST00000465461 BAZ1AQ9NRL2 1556 aaPredicted RBP21.78■■□□□ 1.08
CUX1-207ENST00000465461 MROH2BQ7Z745 1585 aa21.75■■□□□ 1.07
CUX1-207ENST00000465461 ATAD2BQ9ULI0 1458 aa21.7■■□□□ 1.06
CUX1-207ENST00000465461 NCAPD3P42695 1498 aa21.64■■□□□ 1.05
CUX1-207ENST00000465461 SMARCA2P51531 1590 aa21.61■■□□□ 1.05
CUX1-207ENST00000465461 PEG3Q9GZU2 1588 aa21.55■■□□□ 1.04
CUX1-207ENST00000465461 WIZO95785 1651 aa21.53■■□□□ 1.04
CUX1-207ENST00000465461 BAZ1BQ9UIG0 1483 aaKnown RBP21.52■■□□□ 1.03
CUX1-207ENST00000465461 RSF1Q96T23 1441 aaPredicted RBP21.51■■□□□ 1.03
CUX1-207ENST00000465461 HMGXB3Q12766 1538 aa21.5■■□□□ 1.03
CUX1-207ENST00000465461 TOP2AP11388 1531 aaKnown RBP21.24■□□□□ 0.99
CUX1-207ENST00000465461 NESP48681 1621 aa21.21■□□□□ 0.99
CUX1-207ENST00000465461 SUPT5HO00267 1087 aaKnown RBP21.14■□□□□ 0.97
CUX1-207ENST00000465461 CADPSQ9ULU8 1353 aa21.04■□□□□ 0.96
CUX1-207ENST00000465461 CCDC88BA6NC98 1476 aa21.04■□□□□ 0.96
CUX1-207ENST00000465461 LAMC3Q9Y6N6 1575 aa21.03■□□□□ 0.96
CUX1-207ENST00000465461 ERCC6Q03468 1493 aa21.03■□□□□ 0.96
CUX1-207ENST00000465461 CFTRP13569 1480 aa20.92■□□□□ 0.94
CUX1-207ENST00000465461 KIF21AQ7Z4S6 1674 aa20.91■□□□□ 0.94
CUX1-207ENST00000465461 PDS5BQ9NTI5 1447 aa20.91■□□□□ 0.94
CUX1-207ENST00000465461 FANCD2Q9BXW9 1451 aa20.81■□□□□ 0.92
CUX1-207ENST00000465461 THOC2Q8NI27 1593 aaKnown RBP20.79■□□□□ 0.92
CUX1-207ENST00000465461 AEBP2Q6ZN18 517 aaPredicted RBP20.76■□□□□ 0.91
CUX1-207ENST00000465461 CEP164Q9UPV0 1460 aa20.75■□□□□ 0.91
CUX1-207ENST00000465461 PRDM2Q13029 1718 aa20.73■□□□□ 0.91
CUX1-207ENST00000465461 CUX2O14529 1486 aa20.71■□□□□ 0.91
CUX1-207ENST00000465461 MRC2Q9UBG0 1479 aa20.71■□□□□ 0.91
CUX1-207ENST00000465461 WDR62O43379 1518 aa20.63■□□□□ 0.89
CUX1-207ENST00000465461 URB2Q14146 1524 aaKnown RBP20.63■□□□□ 0.89
CUX1-207ENST00000465461 TOPBP1Q92547 1522 aa20.49■□□□□ 0.87
CUX1-207ENST00000465461 DNMBPQ6XZF7 1577 aa20.44■□□□□ 0.86
CUX1-207ENST00000465461 ABCC8Q09428 1581 aa20.41■□□□□ 0.86
CUX1-207ENST00000465461 CUX1P39880 1505 aa20.38■□□□□ 0.85
CUX1-207ENST00000465461 POLA1P09884 1462 aaPredicted RBP20.32■□□□□ 0.84
CUX1-207ENST00000465461 FGD5Q6ZNL6 1462 aa20.3■□□□□ 0.84
CUX1-207ENST00000465461 IFT140Q96RY7 1462 aa20.3■□□□□ 0.84
CUX1-207ENST00000465461 RAD54L2Q9Y4B4 1467 aa20.3■□□□□ 0.84
CUX1-207ENST00000465461 ZNF608Q9ULD9 1512 aaPredicted RBP20.29■□□□□ 0.84
CUX1-207ENST00000465461 SOGA1O94964 1423 aa20.26■□□□□ 0.83
CUX1-207ENST00000465461 WRNQ14191 1432 aaPredicted RBP eCLIP20.26■□□□□ 0.83
CUX1-207ENST00000465461 TARBP1Q13395 1621 aaKnown RBP20.24■□□□□ 0.83
CUX1-207ENST00000465461 SYNJ1O43426 1573 aa20.24■□□□□ 0.83
CUX1-207ENST00000465461 AQRO60306 1485 aaKnown RBP eCLIP20.19■□□□□ 0.822e-6■■■□□ 18.3
CUX1-207ENST00000465461 TOP2BQ02880 1626 aa20.18■□□□□ 0.82
CUX1-207ENST00000465461 TDRD9Q8NDG6 1382 aaKnown RBP20.18■□□□□ 0.82
CUX1-207ENST00000465461 BIVM-ERCC5R4GMW8 1640 aa20.17■□□□□ 0.82
CUX1-207ENST00000465461 EIF4G3O43432 1585 aaKnown RBP20.16■□□□□ 0.82
CUX1-207ENST00000465461 WDR97A6NE52 1622 aa20.09■□□□□ 0.81
CUX1-207ENST00000465461 DNAJC5Q9H3Z4 198 aa20.07■□□□□ 0.8
CUX1-207ENST00000465461 ABCA10Q8WWZ4 1543 aa20.06■□□□□ 0.8
CUX1-207ENST00000465461 GAPVD1Q14C86 1478 aa20■□□□□ 0.79
CUX1-207ENST00000465461 FBLN2P98095 1184 aa19.98■□□□□ 0.79
CUX1-207ENST00000465461 SNAPC4Q5SXM2 1469 aa19.98■□□□□ 0.79
CUX1-207ENST00000465461 ABCA5Q8WWZ7 1642 aa19.98■□□□□ 0.79
CUX1-207ENST00000465461 GRIN2BQ13224 1484 aa19.97■□□□□ 0.79
CUX1-207ENST00000465461 PBRM1Q86U86 1689 aa19.95■□□□□ 0.78
CUX1-207ENST00000465461 OSCARQ8IYS5 282 aa19.95■□□□□ 0.78
CUX1-207ENST00000465461 CHD1O14646 1710 aa19.91■□□□□ 0.78
CUX1-207ENST00000465461 TRIM41Q8WV44 630 aa19.9■□□□□ 0.78
CUX1-207ENST00000465461 MAGI1Q96QZ7 1491 aaPredicted RBP19.88■□□□□ 0.77
CUX1-207ENST00000465461 CHMP7Q8WUX9 453 aaPredicted RBP19.88■□□□□ 0.77
CUX1-207ENST00000465461 SYNJ2O15056 1496 aa19.82■□□□□ 0.76
CUX1-207ENST00000465461 KIF27Q86VH2 1401 aa19.82■□□□□ 0.76
CUX1-207ENST00000465461 ERICH3Q5RHP9 1530 aa19.8■□□□□ 0.76
CUX1-207ENST00000465461 ADAMTS12P58397 1594 aa19.78■□□□□ 0.76
CUX1-207ENST00000465461 RUSC2Q8N2Y8 1516 aa19.78■□□□□ 0.76
CUX1-207ENST00000465461 IGF1RP08069 1367 aa19.77■□□□□ 0.76
CUX1-207ENST00000465461 FHAD1B1AJZ9 1412 aa19.76■□□□□ 0.75
CUX1-207ENST00000465461 CHIC1Q5VXU3 224 aa19.73■□□□□ 0.75
CUX1-207ENST00000465461 GRIN2AQ12879 1464 aa19.73■□□□□ 0.75
CUX1-207ENST00000465461 CLASP1Q7Z460 1538 aa19.66■□□□□ 0.74
CUX1-207ENST00000465461 CEP170Q5SW79 1584 aa19.66■□□□□ 0.74
CUX1-207ENST00000465461 CARMIL1Q5VZK9 1371 aa19.65■□□□□ 0.74
CUX1-207ENST00000465461 CUL7Q14999 1698 aa19.62■□□□□ 0.73
CUX1-207ENST00000465461 NUP160Q12769 1436 aa19.62■□□□□ 0.73
CUX1-207ENST00000465461 RIMBP3CA6NJZ7 1639 aa19.62■□□□□ 0.73
CUX1-207ENST00000465461 RIMBP3BA6NNM3 1639 aa19.62■□□□□ 0.73
CUX1-207ENST00000465461 RIMBP3Q9UFD9 1639 aa19.62■□□□□ 0.73
CUX1-207ENST00000465461 ARHGEF11O15085 1522 aa19.61■□□□□ 0.73
CUX1-207ENST00000465461 FAM9AQ8IZU1 332 aaPredicted RBP19.59■□□□□ 0.73
CUX1-207ENST00000465461 CSRNP3Q8WYN3 585 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms