RNA–Protein interactions for RNA: ENST00000465282.5

USP39-211, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-211ENST00000465282 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.84■■□□□ 1.57
USP39-211ENST00000465282 ZFYVE9O95405 1425 aa24.83■■□□□ 1.57
USP39-211ENST00000465282 RIMS2Q9UQ26 1411 aa24.82■■□□□ 1.56
USP39-211ENST00000465282 LTKP29376 864 aa24.81■■□□□ 1.56
USP39-211ENST00000465282 IQGAP1P46940 1657 aa24.81■■□□□ 1.56
USP39-211ENST00000465282 RPGRIP1LQ68CZ1 1315 aa24.8■■□□□ 1.56
USP39-211ENST00000465282 NPHP4O75161 1426 aaPredicted RBP24.79■■□□□ 1.56
USP39-211ENST00000465282 ZNF326Q5BKZ1 582 aaKnown RBP24.79■■□□□ 1.56
USP39-211ENST00000465282 SPATA31E1Q6ZUB1 1445 aa24.78■■□□□ 1.56
USP39-211ENST00000465282 DHX57Q6P158 1386 aaKnown RBP24.77■■□□□ 1.56
USP39-211ENST00000465282 NEXMIFQ5QGS0 1516 aa24.75■■□□□ 1.55
USP39-211ENST00000465282 PPP1R15AO75807 674 aaPredicted RBP24.74■■□□□ 1.55
USP39-211ENST00000465282 PPLO60437 1756 aa24.73■■□□□ 1.55
USP39-211ENST00000465282 PLEKHG1Q9ULL1 1385 aa24.73■■□□□ 1.55
USP39-211ENST00000465282 VGFO15240 615 aaPredicted RBP24.71■■□□□ 1.55
USP39-211ENST00000465282 IFT172Q9UG01 1749 aa24.7■■□□□ 1.54
USP39-211ENST00000465282 RGL3Q3MIN7 710 aa24.68■■□□□ 1.54
USP39-211ENST00000465282 STAC3Q96MF2 364 aa24.66■■□□□ 1.54
USP39-211ENST00000465282 DIP2AQ14689 1571 aa24.65■■□□□ 1.54
USP39-211ENST00000465282 BCANQ96GW7 911 aa24.65■■□□□ 1.54
USP39-211ENST00000465282 SETBP1Q9Y6X0 1596 aa24.64■■□□□ 1.54
USP39-211ENST00000465282 NUTM2DQ5VT03 806 aaPredicted RBP24.64■■□□□ 1.54
USP39-211ENST00000465282 TBX22Q9Y458 520 aa24.63■■□□□ 1.53
USP39-211ENST00000465282 MYOM2P54296 1465 aa24.59■■□□□ 1.53
USP39-211ENST00000465282 SLC26A8Q96RN1 970 aa24.59■■□□□ 1.53
USP39-211ENST00000465282 NRXN3Q9Y4C0 1643 aa24.59■■□□□ 1.53
USP39-211ENST00000465282 ADAMTS13Q76LX8 1427 aa24.59■■□□□ 1.53
USP39-211ENST00000465282 CLSPNQ9HAW4 1339 aa24.59■■□□□ 1.53
USP39-211ENST00000465282 PIK3R4Q99570 1358 aa24.58■■□□□ 1.53
USP39-211ENST00000465282 LTBP4Q8N2S1 1624 aa24.56■■□□□ 1.52
USP39-211ENST00000465282 ZNF335Q9H4Z2 1342 aaPredicted RBP24.56■■□□□ 1.52
USP39-211ENST00000465282 CHD2O14647 1828 aaKnown RBP24.56■■□□□ 1.52
USP39-211ENST00000465282 CPS1P31327 1500 aa24.55■■□□□ 1.52
USP39-211ENST00000465282 NRXN1Q9ULB1 1477 aa24.54■■□□□ 1.52
USP39-211ENST00000465282 SIN3AQ96ST3 1273 aa24.54■■□□□ 1.52
USP39-211ENST00000465282 ADGRF5Q8IZF2 1346 aa24.54■■□□□ 1.52
USP39-211ENST00000465282 DCAF11Q8TEB1 546 aa24.53■■□□□ 1.52
USP39-211ENST00000465282 KCNA6P17658 529 aa24.52■■□□□ 1.52
USP39-211ENST00000465282 ALKQ9UM73 1620 aa24.52■■□□□ 1.52
USP39-211ENST00000465282 PIK3C2GO75747 1445 aa24.52■■□□□ 1.52
USP39-211ENST00000465282 NEUROD1Q13562 356 aa24.51■■□□□ 1.51
USP39-211ENST00000465282 SETD1AO15047 1707 aaKnown RBP24.51■■□□□ 1.51
USP39-211ENST00000465282 STRCP1A6NGW2 1772 aa24.51■■□□□ 1.51
USP39-211ENST00000465282 NWD1Q149M9 1564 aa24.5■■□□□ 1.51
USP39-211ENST00000465282 LAMC1P11047 1609 aa24.5■■□□□ 1.51
USP39-211ENST00000465282 SENP3Q9H4L4 574 aaPredicted RBP24.49■■□□□ 1.51
USP39-211ENST00000465282 IQSEC2Q5JU85 1478 aa24.47■■□□□ 1.51
USP39-211ENST00000465282 KDM2AQ9Y2K7 1162 aa24.47■■□□□ 1.51
USP39-211ENST00000465282 NKTRP30414 1462 aaKnown RBP24.46■■□□□ 1.51
USP39-211ENST00000465282 CERKQ8TCT0 537 aa24.45■■□□□ 1.5
USP39-211ENST00000465282 C14orf93Q9H972 538 aaKnown RBP24.45■■□□□ 1.5
USP39-211ENST00000465282 CCER1Q8TC90 406 aaPredicted RBP24.44■■□□□ 1.5
USP39-211ENST00000465282 L3MBTL2Q969R5 705 aa24.44■■□□□ 1.5
USP39-211ENST00000465282 METP08581 1390 aa24.43■■□□□ 1.5
USP39-211ENST00000465282 FBXO41Q8TF61 875 aa24.43■■□□□ 1.5
USP39-211ENST00000465282 XRN1Q8IZH2 1706 aaKnown RBP24.42■■□□□ 1.5
USP39-211ENST00000465282 TONSLQ96HA7 1378 aa24.42■■□□□ 1.5
USP39-211ENST00000465282 AMOTL2Q9Y2J4 779 aa24.41■■□□□ 1.5
USP39-211ENST00000465282 KIAA1210Q9ULL0 1709 aa24.41■■□□□ 1.5
USP39-211ENST00000465282 LRRC7Q96NW7 1537 aa24.4■■□□□ 1.5
USP39-211ENST00000465282 PTPRUQ92729 1446 aa24.4■■□□□ 1.5
USP39-211ENST00000465282 PRAG1Q86YV5 1406 aa24.39■■□□□ 1.5
USP39-211ENST00000465282 TIMELESSQ9UNS1 1208 aa24.38■■□□□ 1.49
USP39-211ENST00000465282 NCOA3Q9Y6Q9 1424 aa24.37■■□□□ 1.49
USP39-211ENST00000465282 CFAP70Q5T0N1 1121 aa24.37■■□□□ 1.49
USP39-211ENST00000465282 PROSER2Q86WR7 435 aaPredicted RBP24.37■■□□□ 1.49
USP39-211ENST00000465282 XIRP1Q702N8 1843 aaKnown RBP24.36■■□□□ 1.49
USP39-211ENST00000465282 LRPPRCP42704 1394 aaKnown RBP24.34■■□□□ 1.49
USP39-211ENST00000465282 KNDC1Q76NI1 1749 aa24.34■■□□□ 1.49
USP39-211ENST00000465282 ASXL1Q8IXJ9 1541 aa24.33■■□□□ 1.49
USP39-211ENST00000465282 PTCH1Q13635 1447 aa24.33■■□□□ 1.49
USP39-211ENST00000465282 ABCC11Q96J66 1382 aa24.32■■□□□ 1.48
USP39-211ENST00000465282 TECPR2O15040 1411 aa24.32■■□□□ 1.48
USP39-211ENST00000465282 YTHDC2Q9H6S0 1430 aaKnown RBP24.32■■□□□ 1.48
USP39-211ENST00000465282 TMEM94Q12767 1356 aa24.31■■□□□ 1.48
USP39-211ENST00000465282 ADGRB1O14514 1584 aa24.31■■□□□ 1.48
USP39-211ENST00000465282 TMEM132EQ6IEE7 984 aa24.31■■□□□ 1.48
USP39-211ENST00000465282 SIRT1Q96EB6 747 aa24.3■■□□□ 1.48
USP39-211ENST00000465282 TRPM1Q7Z4N2 1603 aa24.27■■□□□ 1.48
USP39-211ENST00000465282 STK26Q9P289 416 aa24.25■■□□□ 1.47
USP39-211ENST00000465282 MSH6P52701 1360 aa24.25■■□□□ 1.47
USP39-211ENST00000465282 ROBO2Q9HCK4 1378 aa24.25■■□□□ 1.47
USP39-211ENST00000465282 FAM135BQ49AJ0 1406 aa24.25■■□□□ 1.47
USP39-211ENST00000465282 DLC1Q96QB1 1528 aa24.25■■□□□ 1.47
USP39-211ENST00000465282 C19orf44Q9H6X5 657 aa24.23■■□□□ 1.47
USP39-211ENST00000465282 TOM1O60784 492 aa24.22■■□□□ 1.47
USP39-211ENST00000465282 C14orf37Q86TY3 774 aa24.21■■□□□ 1.47
USP39-211ENST00000465282 RBM33Q96EV2 1170 aaKnown RBP24.2■■□□□ 1.46
USP39-211ENST00000465282 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.2■■□□□ 1.46
USP39-211ENST00000465282 DCCP43146 1447 aa24.19■■□□□ 1.46
USP39-211ENST00000465282 NBPF1Q3BBV0 1214 aa24.19■■□□□ 1.46
USP39-211ENST00000465282 NBPF8Q3BBV2 869 aa24.19■■□□□ 1.46
USP39-211ENST00000465282 ADGRL3Q9HAR2 1447 aa24.18■■□□□ 1.46
USP39-211ENST00000465282 UBAP1LF5GYI3 381 aa24.18■■□□□ 1.46
USP39-211ENST00000465282 NALCNQ8IZF0 1738 aa24.18■■□□□ 1.46
USP39-211ENST00000465282 CADPS2Q86UW7 1296 aa24.17■■□□□ 1.46
USP39-211ENST00000465282 TRAK1Q9UPV9 953 aa24.17■■□□□ 1.46
USP39-211ENST00000465282 RALGAPBQ86X10 1494 aa24.17■■□□□ 1.46
USP39-211ENST00000465282 ROCK2O75116 1388 aaKnown RBP24.16■■□□□ 1.46
USP39-211ENST00000465282 ARHGEF28Q8N1W1 1705 aaKnown RBP24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms