RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 PIK3C2BO00750 1634 aa11.17□□□□□ -0.62
USP4-207ENST00000462673 ADGRB3O60242 1522 aa11.16□□□□□ -0.62
USP4-207ENST00000462673 SLIT1O75093 1534 aa11.16□□□□□ -0.62
USP4-207ENST00000462673 LTKP29376 864 aa11.16□□□□□ -0.62
USP4-207ENST00000462673 RIMS2Q9UQ26 1411 aa11.16□□□□□ -0.62
USP4-207ENST00000462673 UBR1Q8IWV7 1749 aa11.15□□□□□ -0.62
USP4-207ENST00000462673 CLSPNQ9HAW4 1339 aa11.15□□□□□ -0.62
USP4-207ENST00000462673 SCAF11Q99590 1463 aaKnown RBP11.15□□□□□ -0.62
USP4-207ENST00000462673 KIF1BO60333 1816 aa11.15□□□□□ -0.62
USP4-207ENST00000462673 TBX22Q9Y458 520 aa11.15□□□□□ -0.62
USP4-207ENST00000462673 MED14O60244 1454 aa11.14□□□□□ -0.63
USP4-207ENST00000462673 ARHGAP23Q9P227 1491 aa11.14□□□□□ -0.63
USP4-207ENST00000462673 NPHP4O75161 1426 aaPredicted RBP11.14□□□□□ -0.63
USP4-207ENST00000462673 TMEM131LA2VDJ0 1609 aa11.13□□□□□ -0.63
USP4-207ENST00000462673 NEUROD1Q13562 356 aa11.13□□□□□ -0.63
USP4-207ENST00000462673 CCER1Q8TC90 406 aaPredicted RBP11.13□□□□□ -0.63
USP4-207ENST00000462673 DCAF11Q8TEB1 546 aa11.13□□□□□ -0.63
USP4-207ENST00000462673 PLEKHG1Q9ULL1 1385 aa11.13□□□□□ -0.63
USP4-207ENST00000462673 NEURL4Q96JN8 1562 aa11.12□□□□□ -0.63
USP4-207ENST00000462673 TIMELESSQ9UNS1 1208 aa11.12□□□□□ -0.63
USP4-207ENST00000462673 DHX57Q6P158 1386 aaKnown RBP11.12□□□□□ -0.63
USP4-207ENST00000462673 ZFYVE9O95405 1425 aa11.11□□□□□ -0.63
USP4-207ENST00000462673 NUTM2DQ5VT03 806 aaPredicted RBP11.11□□□□□ -0.63
USP4-207ENST00000462673 SLC26A8Q96RN1 970 aa11.11□□□□□ -0.63
USP4-207ENST00000462673 CLTCL1P53675 1640 aa11.1□□□□□ -0.63
USP4-207ENST00000462673 KDM2AQ9Y2K7 1162 aa11.1□□□□□ -0.63
USP4-207ENST00000462673 STRCQ7RTU9 1775 aa11.09□□□□□ -0.63
USP4-207ENST00000462673 PIK3R4Q99570 1358 aa11.09□□□□□ -0.63
USP4-207ENST00000462673 KCNA6P17658 529 aa11.09□□□□□ -0.63
USP4-207ENST00000462673 SPATA31E1Q6ZUB1 1445 aa11.09□□□□□ -0.63
USP4-207ENST00000462673 POLR1AO95602 1720 aaPredicted RBP11.08□□□□□ -0.64
USP4-207ENST00000462673 DIEXFQ68CQ4 756 aaKnown RBP11.07□□□□□ -0.64
USP4-207ENST00000462673 SIN3AQ96ST3 1273 aa11.07□□□□□ -0.64
USP4-207ENST00000462673 IQGAP1P46940 1657 aa11.07□□□□□ -0.64
USP4-207ENST00000462673 TONSLQ96HA7 1378 aa11.06□□□□□ -0.64
USP4-207ENST00000462673 PROSER2Q86WR7 435 aaPredicted RBP11.05□□□□□ -0.64
USP4-207ENST00000462673 CERKQ8TCT0 537 aa11.05□□□□□ -0.64
USP4-207ENST00000462673 C14orf93Q9H972 538 aaKnown RBP11.05□□□□□ -0.64
USP4-207ENST00000462673 L3MBTL2Q969R5 705 aa11.04□□□□□ -0.64
USP4-207ENST00000462673 AMOTL2Q9Y2J4 779 aa11.04□□□□□ -0.64
USP4-207ENST00000462673 GTF3C3Q9Y5Q9 886 aa11.04□□□□□ -0.64
USP4-207ENST00000462673 ADGRF5Q8IZF2 1346 aa11.04□□□□□ -0.64
USP4-207ENST00000462673 ZNF335Q9H4Z2 1342 aaPredicted RBP11.04□□□□□ -0.64
USP4-207ENST00000462673 NEXMIFQ5QGS0 1516 aa11.04□□□□□ -0.64
USP4-207ENST00000462673 DIP2AQ14689 1571 aa11.03□□□□□ -0.64
USP4-207ENST00000462673 MYO5BQ9ULV0 1848 aa11.03□□□□□ -0.64
USP4-207ENST00000462673 CPS1P31327 1500 aa11.03□□□□□ -0.64
USP4-207ENST00000462673 TOM1O60784 492 aa11.02□□□□□ -0.65
USP4-207ENST00000462673 C14orf37Q86TY3 774 aa11.02□□□□□ -0.65
USP4-207ENST00000462673 SIRT1Q96EB6 747 aa11.02□□□□□ -0.65
USP4-207ENST00000462673 MYOM2P54296 1465 aa11.01□□□□□ -0.65
USP4-207ENST00000462673 SETBP1Q9Y6X0 1596 aa11.01□□□□□ -0.65
USP4-207ENST00000462673 NCOA3Q9Y6Q9 1424 aa11.01□□□□□ -0.65
USP4-207ENST00000462673 SLC24A1O60721 1099 aa11□□□□□ -0.65
USP4-207ENST00000462673 CFAP70Q5T0N1 1121 aa11□□□□□ -0.65
USP4-207ENST00000462673 PPLO60437 1756 aa11□□□□□ -0.65
USP4-207ENST00000462673 ADAMTS13Q76LX8 1427 aa11□□□□□ -0.65
USP4-207ENST00000462673 C19orf44Q9H6X5 657 aa10.99□□□□□ -0.65
USP4-207ENST00000462673 PIK3C2GO75747 1445 aa10.99□□□□□ -0.65
USP4-207ENST00000462673 IQSEC2Q5JU85 1478 aa10.99□□□□□ -0.65
USP4-207ENST00000462673 ATF3P18847 181 aa10.98□□□□□ -0.65
USP4-207ENST00000462673 POGKQ9P215 609 aa10.98□□□□□ -0.65
USP4-207ENST00000462673 STK26Q9P289 416 aa10.98□□□□□ -0.65
USP4-207ENST00000462673 ALKQ9UM73 1620 aa10.98□□□□□ -0.65
USP4-207ENST00000462673 TMEM132EQ6IEE7 984 aa10.97□□□□□ -0.65
USP4-207ENST00000462673 CADPS2Q86UW7 1296 aa10.97□□□□□ -0.65
USP4-207ENST00000462673 METP08581 1390 aa10.97□□□□□ -0.65
USP4-207ENST00000462673 MSH6P52701 1360 aa10.97□□□□□ -0.65
USP4-207ENST00000462673 ABCC11Q96J66 1382 aa10.97□□□□□ -0.65
USP4-207ENST00000462673 NKTRP30414 1462 aaKnown RBP10.96□□□□□ -0.65
USP4-207ENST00000462673 NRXN1Q9ULB1 1477 aa10.96□□□□□ -0.65
USP4-207ENST00000462673 LRPPRCP42704 1394 aaKnown RBP10.95□□□□□ -0.66
USP4-207ENST00000462673 LAMC1P11047 1609 aa10.95□□□□□ -0.66
USP4-207ENST00000462673 TMEM94Q12767 1356 aa10.94□□□□□ -0.66
USP4-207ENST00000462673 ZNF316A6NFI3 1004 aaPredicted RBP10.94□□□□□ -0.66
USP4-207ENST00000462673 UBAP1LF5GYI3 381 aa10.94□□□□□ -0.66
USP4-207ENST00000462673 FBXO41Q8TF61 875 aa10.94□□□□□ -0.66
USP4-207ENST00000462673 TRAK1Q9UPV9 953 aa10.94□□□□□ -0.66
USP4-207ENST00000462673 IFT172Q9UG01 1749 aa10.94□□□□□ -0.66
USP4-207ENST00000462673 LTBP4Q8N2S1 1624 aa10.94□□□□□ -0.66
USP4-207ENST00000462673 YTHDC2Q9H6S0 1430 aaKnown RBP10.93□□□□□ -0.66
USP4-207ENST00000462673 CHD2O14647 1828 aaKnown RBP10.93□□□□□ -0.66
USP4-207ENST00000462673 PRAG1Q86YV5 1406 aa10.92□□□□□ -0.66
USP4-207ENST00000462673 ROCK2O75116 1388 aaKnown RBP10.92□□□□□ -0.66
USP4-207ENST00000462673 CARD11Q9BXL7 1154 aa10.92□□□□□ -0.66
USP4-207ENST00000462673 LRRC7Q96NW7 1537 aa10.92□□□□□ -0.66
USP4-207ENST00000462673 FAM135BQ49AJ0 1406 aa10.92□□□□□ -0.66
USP4-207ENST00000462673 EIF3AQ14152 1382 aaKnown RBP10.91□□□□□ -0.66
USP4-207ENST00000462673 PRAM1Q96QH2 718 aa10.91□□□□□ -0.66
USP4-207ENST00000462673 SLAIN2Q9P270 581 aa10.91□□□□□ -0.66
USP4-207ENST00000462673 PTCH1Q13635 1447 aa10.91□□□□□ -0.66
USP4-207ENST00000462673 NRXN3Q9Y4C0 1643 aa10.91□□□□□ -0.66
USP4-207ENST00000462673 NWD1Q149M9 1564 aa10.9□□□□□ -0.66
USP4-207ENST00000462673 NBPF1Q3BBV0 1214 aa10.9□□□□□ -0.66
USP4-207ENST00000462673 WAPLQ7Z5K2 1190 aa10.9□□□□□ -0.66
USP4-207ENST00000462673 TECPR2O15040 1411 aa10.9□□□□□ -0.66
USP4-207ENST00000462673 PTPRUQ92729 1446 aa10.9□□□□□ -0.66
USP4-207ENST00000462673 KIAA1210Q9ULL0 1709 aa10.89□□□□□ -0.67
USP4-207ENST00000462673 RBM33Q96EV2 1170 aaKnown RBP10.89□□□□□ -0.67
USP4-207ENST00000462673 PIP4K2BP78356 416 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms