RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 ADGRB3O60242 1522 aa15.86■□□□□ 0.13
SCN9A-205ENST00000454569 CHGAP10645 457 aaKnown RBP15.85■□□□□ 0.13
SCN9A-205ENST00000454569 NBPF8Q3BBV2 869 aa15.84■□□□□ 0.13
SCN9A-205ENST00000454569 TIMELESSQ9UNS1 1208 aa15.84■□□□□ 0.13
SCN9A-205ENST00000454569 KDM2AQ9Y2K7 1162 aa15.84■□□□□ 0.13
SCN9A-205ENST00000454569 TNRQ92752 1358 aa15.84■□□□□ 0.13
SCN9A-205ENST00000454569 PTPRMP28827 1452 aa15.84■□□□□ 0.13
SCN9A-205ENST00000454569 DCAF11Q8TEB1 546 aa15.83■□□□□ 0.13
SCN9A-205ENST00000454569 PPLO60437 1756 aa15.83■□□□□ 0.13
SCN9A-205ENST00000454569 SLC52A1Q9NWF4 448 aa15.83■□□□□ 0.12
SCN9A-205ENST00000454569 SETD1BQ9UPS6 1966 aaKnown RBP15.82■□□□□ 0.12
SCN9A-205ENST00000454569 UBR1Q8IWV7 1749 aa15.82■□□□□ 0.12
SCN9A-205ENST00000454569 NEURL4Q96JN8 1562 aa15.81■□□□□ 0.12
SCN9A-205ENST00000454569 MYO3AQ8NEV4 1616 aa15.8■□□□□ 0.12
SCN9A-205ENST00000454569 NUTM2DQ5VT03 806 aaPredicted RBP15.79■□□□□ 0.12
SCN9A-205ENST00000454569 A2ML1A8K2U0 1454 aa15.79■□□□□ 0.12
SCN9A-205ENST00000454569 NEXMIFQ5QGS0 1516 aa15.78■□□□□ 0.12
SCN9A-205ENST00000454569 ZNF326Q5BKZ1 582 aaKnown RBP15.78■□□□□ 0.12
SCN9A-205ENST00000454569 ADGRF5Q8IZF2 1346 aa15.76■□□□□ 0.11
SCN9A-205ENST00000454569 KDM5AP29375 1690 aaKnown RBP15.75■□□□□ 0.11
SCN9A-205ENST00000454569 UHRF1BP1Q6BDS2 1440 aa15.75■□□□□ 0.11
SCN9A-205ENST00000454569 PRAG1Q86YV5 1406 aa15.75■□□□□ 0.11
SCN9A-205ENST00000454569 NLRP1Q9C000 1473 aa15.74■□□□□ 0.11
SCN9A-205ENST00000454569 TRPM1Q7Z4N2 1603 aa15.74■□□□□ 0.11
SCN9A-205ENST00000454569 STAG3Q9UJ98 1225 aa15.74■□□□□ 0.11
SCN9A-205ENST00000454569 ATF5Q9Y2D1 282 aaPredicted RBP15.74■□□□□ 0.11
SCN9A-205ENST00000454569 U3KPZ7 1027 aaPredicted RBP15.73■□□□□ 0.11
SCN9A-205ENST00000454569 CEP170BQ9Y4F5 1589 aaPredicted RBP15.73■□□□□ 0.11
SCN9A-205ENST00000454569 ZNF142P52746 1687 aaPredicted RBP15.73■□□□□ 0.11
SCN9A-205ENST00000454569 ZFYVE9O95405 1425 aa15.71■□□□□ 0.11
SCN9A-205ENST00000454569 MYOM2P54296 1465 aa15.71■□□□□ 0.11
SCN9A-205ENST00000454569 NBPF1Q3BBV0 1214 aa15.7■□□□□ 0.1
SCN9A-205ENST00000454569 NRXN1Q9ULB1 1477 aa15.7■□□□□ 0.1
SCN9A-205ENST00000454569 RPGRIP1LQ68CZ1 1315 aa15.7■□□□□ 0.1
SCN9A-205ENST00000454569 RIMS2Q9UQ26 1411 aa15.7■□□□□ 0.1
SCN9A-205ENST00000454569 LTKP29376 864 aa15.68■□□□□ 0.1
SCN9A-205ENST00000454569 TMEM2Q9UHN6 1383 aa15.67■□□□□ 0.1
SCN9A-205ENST00000454569 CFAP70Q5T0N1 1121 aa15.67■□□□□ 0.1
SCN9A-205ENST00000454569 RALGAPBQ86X10 1494 aa15.67■□□□□ 0.1
SCN9A-205ENST00000454569 HIRIP3Q9BW71 556 aaPredicted RBP15.66■□□□□ 0.1
SCN9A-205ENST00000454569 NRXN3Q9Y4C0 1643 aa15.66■□□□□ 0.1
SCN9A-205ENST00000454569 ARHGAP23Q9P227 1491 aa15.66■□□□□ 0.1
SCN9A-205ENST00000454569 PIK3C2GO75747 1445 aa15.66■□□□□ 0.1
SCN9A-205ENST00000454569 KIAA1210Q9ULL0 1709 aa15.66■□□□□ 0.1
SCN9A-205ENST00000454569 IQGAP1P46940 1657 aa15.66■□□□□ 0.1
SCN9A-205ENST00000454569 SLIT1O75093 1534 aa15.65■□□□□ 0.1
SCN9A-205ENST00000454569 SAMD1Q6SPF0 538 aaPredicted RBP15.65■□□□□ 0.1
SCN9A-205ENST00000454569 SETD1AO15047 1707 aaKnown RBP15.65■□□□□ 0.1
SCN9A-205ENST00000454569 VGFO15240 615 aaPredicted RBP15.64■□□□□ 0.09
SCN9A-205ENST00000454569 THEMISQ8N1K5 641 aaPredicted RBP15.63■□□□□ 0.09
SCN9A-205ENST00000454569 STAC3Q96MF2 364 aa15.63■□□□□ 0.09
SCN9A-205ENST00000454569 TXNDC2Q86VQ3 553 aa15.62■□□□□ 0.09
SCN9A-205ENST00000454569 C14orf93Q9H972 538 aaKnown RBP15.62■□□□□ 0.09
SCN9A-205ENST00000454569 ASXL1Q8IXJ9 1541 aa15.61■□□□□ 0.09
SCN9A-205ENST00000454569 ALKQ9UM73 1620 aa15.61■□□□□ 0.09
SCN9A-205ENST00000454569 FKBP8Q14318 412 aa15.61■□□□□ 0.09
SCN9A-205ENST00000454569 TMEM132EQ6IEE7 984 aa15.61■□□□□ 0.09
SCN9A-205ENST00000454569 ROCK2O75116 1388 aaKnown RBP15.61■□□□□ 0.09
SCN9A-205ENST00000454569 CARD11Q9BXL7 1154 aa15.6■□□□□ 0.09
SCN9A-205ENST00000454569 GPRASP1Q5JY77 1395 aa15.6■□□□□ 0.09
SCN9A-205ENST00000454569 ADGRB1O14514 1584 aa15.6■□□□□ 0.09
SCN9A-205ENST00000454569 LAMC1P11047 1609 aa15.59■□□□□ 0.09
SCN9A-205ENST00000454569 HSPA5P11021 654 aaKnown RBP15.59■□□□□ 0.09
SCN9A-205ENST00000454569 HSPA2P54652 639 aa15.59■□□□□ 0.09
SCN9A-205ENST00000454569 POLR1AO95602 1720 aaPredicted RBP15.59■□□□□ 0.09
SCN9A-205ENST00000454569 LMTK3Q96Q04 1460 aa15.58■□□□□ 0.09
SCN9A-205ENST00000454569 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.58■□□□□ 0.09
SCN9A-205ENST00000454569 SETBP1Q9Y6X0 1596 aa15.58■□□□□ 0.08
SCN9A-205ENST00000454569 ADAMTS13Q76LX8 1427 aa15.57■□□□□ 0.08
SCN9A-205ENST00000454569 SCAF11Q99590 1463 aaKnown RBP15.57■□□□□ 0.08
SCN9A-205ENST00000454569 PLEKHG1Q9ULL1 1385 aa15.56■□□□□ 0.08
SCN9A-205ENST00000454569 NCKAP5LQ9HCH0 1330 aa15.56■□□□□ 0.08
SCN9A-205ENST00000454569 USP47Q96K76 1375 aa15.55■□□□□ 0.08
SCN9A-205ENST00000454569 EID1Q9Y6B2 187 aa15.55■□□□□ 0.08
SCN9A-205ENST00000454569 STRCQ7RTU9 1775 aa15.55■□□□□ 0.08
SCN9A-205ENST00000454569 METP08581 1390 aa15.55■□□□□ 0.08
SCN9A-205ENST00000454569 HDGFP51858 240 aaKnown RBP15.54■□□□□ 0.08
SCN9A-205ENST00000454569 SLC26A8Q96RN1 970 aa15.54■□□□□ 0.08
SCN9A-205ENST00000454569 MED14O60244 1454 aa15.54■□□□□ 0.08
SCN9A-205ENST00000454569 ZNF316A6NFI3 1004 aaPredicted RBP15.53■□□□□ 0.08
SCN9A-205ENST00000454569 EIF4G2P78344 907 aaKnown RBP eCLIP15.53■□□□□ 0.08
SCN9A-205ENST00000454569 ARHGEF28Q8N1W1 1705 aaKnown RBP15.53■□□□□ 0.08
SCN9A-205ENST00000454569 ANKLE2Q86XL3 938 aa15.53■□□□□ 0.08
SCN9A-205ENST00000454569 BCANQ96GW7 911 aa15.53■□□□□ 0.08
SCN9A-205ENST00000454569 ST20-MTHFSA0A0A6YYL1 179 aa15.52■□□□□ 0.07
SCN9A-205ENST00000454569 C11orf95C9JLR9 678 aaPredicted RBP15.52■□□□□ 0.07
SCN9A-205ENST00000454569 STK26Q9P289 416 aa15.51■□□□□ 0.07
SCN9A-205ENST00000454569 TRAK1Q9UPV9 953 aa15.51■□□□□ 0.07
SCN9A-205ENST00000454569 PTPRUQ92729 1446 aa15.5■□□□□ 0.07
SCN9A-205ENST00000454569 YTHDC2Q9H6S0 1430 aaKnown RBP15.49■□□□□ 0.07
SCN9A-205ENST00000454569 CHD2O14647 1828 aaKnown RBP15.49■□□□□ 0.07
SCN9A-205ENST00000454569 NPHP4O75161 1426 aaPredicted RBP15.48■□□□□ 0.07
SCN9A-205ENST00000454569 TESK2Q96S53 571 aa15.47■□□□□ 0.07
SCN9A-205ENST00000454569 TBX22Q9Y458 520 aa15.47■□□□□ 0.07
SCN9A-205ENST00000454569 QRICH2Q9H0J4 1663 aa15.47■□□□□ 0.07
SCN9A-205ENST00000454569 KNDC1Q76NI1 1749 aa15.46■□□□□ 0.06
SCN9A-205ENST00000454569 LRPPRCP42704 1394 aaKnown RBP15.45■□□□□ 0.06
SCN9A-205ENST00000454569 DIP2AQ14689 1571 aa15.45■□□□□ 0.06
SCN9A-205ENST00000454569 STRCP1A6NGW2 1772 aa15.44■□□□□ 0.06
SCN9A-205ENST00000454569 PLEKHH1Q9ULM0 1364 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 227.1 ms