RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 CLTCQ00610 1675 aaKnown RBP29.35■■■□□ 2.29
PTPRF-207ENST00000436724 IDI1Q13907 227 aa29.35■■■□□ 2.29
PTPRF-207ENST00000436724 PPP6R1Q9UPN7 881 aa29.32■■■□□ 2.28
PTPRF-207ENST00000436724 CFAP70Q5T0N1 1121 aa29.31■■■□□ 2.28
PTPRF-207ENST00000436724 DNAJC5Q9H3Z4 198 aa29.3■■■□□ 2.28
PTPRF-207ENST00000436724 PPLO60437 1756 aa29.29■■■□□ 2.28
PTPRF-207ENST00000436724 ARID4BQ4LE39 1312 aaPredicted RBP29.29■■■□□ 2.28
PTPRF-207ENST00000436724 SLC52A1Q9NWF4 448 aa29.28■■■□□ 2.28
PTPRF-207ENST00000436724 ERVK-7P63135 1459 aa29.27■■■□□ 2.28
PTPRF-207ENST00000436724 NRXN1Q9ULB1 1477 aa29.27■■■□□ 2.28
PTPRF-207ENST00000436724 TESK2Q96S53 571 aa29.27■■■□□ 2.28
PTPRF-207ENST00000436724 NUTM2DQ5VT03 806 aaPredicted RBP29.26■■■□□ 2.28
PTPRF-207ENST00000436724 KIAA1210Q9ULL0 1709 aa29.26■■■□□ 2.27
PTPRF-207ENST00000436724 IQGAP1P46940 1657 aa29.25■■■□□ 2.27
PTPRF-207ENST00000436724 RPGRIP1LQ68CZ1 1315 aa29.23■■■□□ 2.27
PTPRF-207ENST00000436724 MYO5BQ9ULV0 1848 aa29.22■■■□□ 2.27
PTPRF-207ENST00000436724 SCAF11Q99590 1463 aaKnown RBP29.22■■■□□ 2.27
PTPRF-207ENST00000436724 DISP3Q9P2K9 1392 aa29.21■■■□□ 2.27
PTPRF-207ENST00000436724 CCER2I3L3R5 266 aa29.2■■■□□ 2.27
PTPRF-207ENST00000436724 NEXMIFQ5QGS0 1516 aa29.2■■■□□ 2.27
PTPRF-207ENST00000436724 PIK3C2GO75747 1445 aa29.2■■■□□ 2.26
PTPRF-207ENST00000436724 ESF1Q9H501 851 aaKnown RBP29.2■■■□□ 2.26
PTPRF-207ENST00000436724 TMEM131LA2VDJ0 1609 aa29.19■■■□□ 2.26
PTPRF-207ENST00000436724 ZMYM3Q14202 1370 aa29.16■■■□□ 2.26
PTPRF-207ENST00000436724 PELP1Q8IZL8 1130 aaKnown RBP29.16■■■□□ 2.26
PTPRF-207ENST00000436724 SPATA31D1Q6ZQQ2 1576 aa29.15■■■□□ 2.26
PTPRF-207ENST00000436724 SENP3Q9H4L4 574 aaPredicted RBP29.14■■■□□ 2.26
PTPRF-207ENST00000436724 PRKRIP1Q9H875 184 aaPredicted RBP29.14■■■□□ 2.26
PTPRF-207ENST00000436724 VGFO15240 615 aaPredicted RBP29.13■■■□□ 2.25
PTPRF-207ENST00000436724 C14orf93Q9H972 538 aaKnown RBP29.13■■■□□ 2.25
PTPRF-207ENST00000436724 TMF1P82094 1093 aa29.12■■■□□ 2.25
PTPRF-207ENST00000436724 CNGB1Q14028 1251 aaPredicted RBP29.12■■■□□ 2.25
PTPRF-207ENST00000436724 STAG3Q9UJ98 1225 aa29.11■■■□□ 2.25
PTPRF-207ENST00000436724 TMEM132EQ6IEE7 984 aa29.1■■■□□ 2.25
PTPRF-207ENST00000436724 EIF3AQ14152 1382 aaKnown RBP29.09■■■□□ 2.25
PTPRF-207ENST00000436724 SETBP1Q9Y6X0 1596 aa29.08■■■□□ 2.25
PTPRF-207ENST00000436724 ADGRB1O14514 1584 aa29.07■■■□□ 2.24
PTPRF-207ENST00000436724 TRAK1Q9UPV9 953 aa29.04■■■□□ 2.24
PTPRF-207ENST00000436724 ZFYVE9O95405 1425 aa29.04■■■□□ 2.24
PTPRF-207ENST00000436724 CCDC184Q52MB2 194 aa29.03■■■□□ 2.24
PTPRF-207ENST00000436724 A2ML1A8K2U0 1454 aa29.03■■■□□ 2.24
PTPRF-207ENST00000436724 CEBPAP49715 358 aaPredicted RBP28.98■■■□□ 2.23
PTPRF-207ENST00000436724 TNRQ92752 1358 aa28.97■■■□□ 2.23
PTPRF-207ENST00000436724 MYO3AQ8NEV4 1616 aa28.95■■■□□ 2.22
PTPRF-207ENST00000436724 CENPJQ9HC77 1338 aaPredicted RBP28.94■■■□□ 2.22
PTPRF-207ENST00000436724 PANK3Q9H999 370 aa28.94■■■□□ 2.22
PTPRF-207ENST00000436724 PER1O15534 1290 aaPredicted RBP28.93■■■□□ 2.22
PTPRF-207ENST00000436724 PLPPR3Q6T4P5 718 aa28.93■■■□□ 2.22
PTPRF-207ENST00000436724 ASXL1Q8IXJ9 1541 aa28.92■■■□□ 2.22
PTPRF-207ENST00000436724 RIMS2Q9UQ26 1411 aa28.92■■■□□ 2.22
PTPRF-207ENST00000436724 CDCA8Q53HL2 280 aa28.91■■■□□ 2.22
PTPRF-207ENST00000436724 MRS2Q9HD23 443 aa28.9■■■□□ 2.22
PTPRF-207ENST00000436724 FER1L4A9Z1Z3 1794 aa28.89■■■□□ 2.22
PTPRF-207ENST00000436724 STK26Q9P289 416 aa28.88■■■□□ 2.21
PTPRF-207ENST00000436724 QRICH2Q9H0J4 1663 aa28.87■■■□□ 2.21
PTPRF-207ENST00000436724 SBNO2Q9Y2G9 1366 aa28.87■■■□□ 2.21
PTPRF-207ENST00000436724 C3P01024 1663 aa28.87■■■□□ 2.21
PTPRF-207ENST00000436724 KDM5AP29375 1690 aaKnown RBP28.87■■■□□ 2.21
PTPRF-207ENST00000436724 ALKQ9UM73 1620 aa28.86■■■□□ 2.21
PTPRF-207ENST00000436724 ARHGEF28Q8N1W1 1705 aaKnown RBP28.86■■■□□ 2.21
PTPRF-207ENST00000436724 MYOM1P52179 1685 aa28.85■■■□□ 2.21
PTPRF-207ENST00000436724 SLC24A1O60721 1099 aa28.84■■■□□ 2.21
PTPRF-207ENST00000436724 SAFB2Q14151 953 aaKnown RBP eCLIP28.82■■■□□ 2.2
PTPRF-207ENST00000436724 UBR1Q8IWV7 1749 aa28.82■■■□□ 2.2
PTPRF-207ENST00000436724 CC2D1BQ5T0F9 858 aaKnown RBP28.8■■■□□ 2.2
PTPRF-207ENST00000436724 FAM9BQ8IZU0 186 aa28.8■■■□□ 2.2
PTPRF-207ENST00000436724 YTHDC2Q9H6S0 1430 aaKnown RBP28.8■■■□□ 2.2
PTPRF-207ENST00000436724 KTN1Q86UP2 1357 aaKnown RBP28.79■■■□□ 2.2
PTPRF-207ENST00000436724 PTPRMP28827 1452 aa28.79■■■□□ 2.2
PTPRF-207ENST00000436724 RALBP1Q15311 655 aa28.78■■■□□ 2.2
PTPRF-207ENST00000436724 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.77■■■□□ 2.2
PTPRF-207ENST00000436724 PARD3Q8TEW0 1356 aa28.76■■■□□ 2.19
PTPRF-207ENST00000436724 TMEM2Q9UHN6 1383 aa28.76■■■□□ 2.19
PTPRF-207ENST00000436724 NLRP1Q9C000 1473 aa28.76■■■□□ 2.19
PTPRF-207ENST00000436724 NRXN3Q9Y4C0 1643 aa28.75■■■□□ 2.19
PTPRF-207ENST00000436724 MYBBP1AQ9BQG0 1328 aaKnown RBP28.75■■■□□ 2.19
PTPRF-207ENST00000436724 SETD1AO15047 1707 aaKnown RBP28.74■■■□□ 2.19
PTPRF-207ENST00000436724 PRAM1Q96QH2 718 aa28.73■■■□□ 2.19
PTPRF-207ENST00000436724 KNSTRNQ9Y448 316 aa28.73■■■□□ 2.19
PTPRF-207ENST00000436724 HNRNPUQ00839 825 aaKnown RBP eCLIP28.72■■■□□ 2.19
PTPRF-207ENST00000436724 TULP4Q9NRJ4 1543 aa28.71■■■□□ 2.19
PTPRF-207ENST00000436724 HDGFP51858 240 aaKnown RBP28.7■■■□□ 2.19
PTPRF-207ENST00000436724 TMC1Q8TDI8 760 aa28.69■■■□□ 2.18
PTPRF-207ENST00000436724 LTKP29376 864 aa28.68■■■□□ 2.18
PTPRF-207ENST00000436724 BCANQ96GW7 911 aa28.68■■■□□ 2.18
PTPRF-207ENST00000436724 POGKQ9P215 609 aa28.68■■■□□ 2.18
PTPRF-207ENST00000436724 METP08581 1390 aa28.68■■■□□ 2.18
PTPRF-207ENST00000436724 EVC2Q86UK5 1308 aa28.68■■■□□ 2.18
PTPRF-207ENST00000436724 AMER1Q5JTC6 1135 aaPredicted RBP28.68■■■□□ 2.18
PTPRF-207ENST00000436724 RIMS1Q86UR5 1692 aaKnown RBP28.67■■■□□ 2.18
PTPRF-207ENST00000436724 MINK1Q8N4C8 1332 aaPredicted RBP28.67■■■□□ 2.18
PTPRF-207ENST00000436724 SLC12A5Q9H2X9 1139 aa28.67■■■□□ 2.18
PTPRF-207ENST00000436724 CARD14Q9BXL6 1004 aa28.66■■■□□ 2.18
PTPRF-207ENST00000436724 CABP2Q9NPB3 220 aa28.65■■■□□ 2.18
PTPRF-207ENST00000436724 BRD4O60885 1362 aaPredicted RBP28.64■■■□□ 2.18
PTPRF-207ENST00000436724 LRPPRCP42704 1394 aaKnown RBP28.64■■■□□ 2.18
PTPRF-207ENST00000436724 WAPLQ7Z5K2 1190 aa28.63■■■□□ 2.17
PTPRF-207ENST00000436724 NLRP13Q86W25 1043 aa28.63■■■□□ 2.17
PTPRF-207ENST00000436724 TXNDC2Q86VQ3 553 aa28.62■■■□□ 2.17
PTPRF-207ENST00000436724 PNISRQ8TF01 805 aaKnown RBP28.62■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms