RNA–Protein interactions for RNA: ENST00000427478.6

CNEP1R1-202, Transcript of CTD nuclear envelope phosphatase 1 regulatory subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNEP1R1, Length 2,117 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNEP1R1-202ENST00000427478 CNGB1Q14028 1251 aaPredicted RBP29.9■■■□□ 2.38
CNEP1R1-202ENST00000427478 PIK3C2BO00750 1634 aa29.9■■■□□ 2.38
CNEP1R1-202ENST00000427478 ADGRF5Q8IZF2 1346 aa29.9■■■□□ 2.38
CNEP1R1-202ENST00000427478 ARHGAP31Q2M1Z3 1444 aa29.89■■■□□ 2.37
CNEP1R1-202ENST00000427478 REREQ9P2R6 1566 aa29.88■■■□□ 2.37
CNEP1R1-202ENST00000427478 MRS2Q9HD23 443 aa29.87■■■□□ 2.37
CNEP1R1-202ENST00000427478 NRXN1Q9ULB1 1477 aa29.87■■■□□ 2.37
CNEP1R1-202ENST00000427478 TMF1P82094 1093 aa29.85■■■□□ 2.37
CNEP1R1-202ENST00000427478 CFAP70Q5T0N1 1121 aa29.84■■■□□ 2.37
CNEP1R1-202ENST00000427478 PREX1Q8TCU6 1659 aa29.84■■■□□ 2.37
CNEP1R1-202ENST00000427478 AGLP35573 1532 aa29.8■■■□□ 2.36
CNEP1R1-202ENST00000427478 HNRNPUQ00839 825 aaKnown RBP eCLIP29.8■■■□□ 2.36
CNEP1R1-202ENST00000427478 EIF3AQ14152 1382 aaKnown RBP29.79■■■□□ 2.36
CNEP1R1-202ENST00000427478 ARHGEF40Q8TER5 1519 aa29.78■■■□□ 2.36
CNEP1R1-202ENST00000427478 FAM9BQ8IZU0 186 aa29.77■■■□□ 2.36
CNEP1R1-202ENST00000427478 PIK3C2GO75747 1445 aa29.75■■■□□ 2.35
CNEP1R1-202ENST00000427478 CLTCQ00610 1675 aaKnown RBP29.74■■■□□ 2.35
CNEP1R1-202ENST00000427478 MYO5BQ9ULV0 1848 aa29.74■■■□□ 2.35
CNEP1R1-202ENST00000427478 SETBP1Q9Y6X0 1596 aa29.74■■■□□ 2.35
CNEP1R1-202ENST00000427478 RPGRIP1LQ68CZ1 1315 aa29.74■■■□□ 2.35
CNEP1R1-202ENST00000427478 NEXMIFQ5QGS0 1516 aa29.73■■■□□ 2.35
CNEP1R1-202ENST00000427478 IDI1Q13907 227 aa29.7■■■□□ 2.35
CNEP1R1-202ENST00000427478 KTN1Q86UP2 1357 aaKnown RBP29.69■■■□□ 2.34
CNEP1R1-202ENST00000427478 MYO3AQ8NEV4 1616 aa29.69■■■□□ 2.34
CNEP1R1-202ENST00000427478 SLC52A1Q9NWF4 448 aa29.68■■■□□ 2.34
CNEP1R1-202ENST00000427478 PER1O15534 1290 aaPredicted RBP29.68■■■□□ 2.34
CNEP1R1-202ENST00000427478 TMEM131LA2VDJ0 1609 aa29.67■■■□□ 2.34
CNEP1R1-202ENST00000427478 PANK3Q9H999 370 aa29.67■■■□□ 2.34
CNEP1R1-202ENST00000427478 KDM5AP29375 1690 aaKnown RBP29.67■■■□□ 2.34
CNEP1R1-202ENST00000427478 ERVK-7P63135 1459 aa29.67■■■□□ 2.34
CNEP1R1-202ENST00000427478 RALBP1Q15311 655 aa29.66■■■□□ 2.34
CNEP1R1-202ENST00000427478 MYOM1P52179 1685 aa29.65■■■□□ 2.34
CNEP1R1-202ENST00000427478 ADGRB1O14514 1584 aa29.65■■■□□ 2.34
CNEP1R1-202ENST00000427478 NUTM2DQ5VT03 806 aaPredicted RBP29.65■■■□□ 2.34
CNEP1R1-202ENST00000427478 C14orf93Q9H972 538 aaKnown RBP29.65■■■□□ 2.34
CNEP1R1-202ENST00000427478 MYBBP1AQ9BQG0 1328 aaKnown RBP29.64■■■□□ 2.34
CNEP1R1-202ENST00000427478 CDCA8Q53HL2 280 aa29.64■■■□□ 2.34
CNEP1R1-202ENST00000427478 FBXO31Q5XUX0 539 aaPredicted RBP29.64■■■□□ 2.34
CNEP1R1-202ENST00000427478 MLECQ14165 292 aa29.63■■■□□ 2.33
CNEP1R1-202ENST00000427478 PPP6R1Q9UPN7 881 aa29.63■■■□□ 2.33
CNEP1R1-202ENST00000427478 PARD3Q8TEW0 1356 aa29.62■■■□□ 2.33
CNEP1R1-202ENST00000427478 VGFO15240 615 aaPredicted RBP29.6■■■□□ 2.33
CNEP1R1-202ENST00000427478 TMC1Q8TDI8 760 aa29.59■■■□□ 2.33
CNEP1R1-202ENST00000427478 QRICH2Q9H0J4 1663 aa29.59■■■□□ 2.33
CNEP1R1-202ENST00000427478 BRD4O60885 1362 aaPredicted RBP29.57■■■□□ 2.32
CNEP1R1-202ENST00000427478 TMEM132EQ6IEE7 984 aa29.57■■■□□ 2.32
CNEP1R1-202ENST00000427478 TRAK1Q9UPV9 953 aa29.56■■■□□ 2.32
CNEP1R1-202ENST00000427478 CC2D1BQ5T0F9 858 aaKnown RBP29.56■■■□□ 2.32
CNEP1R1-202ENST00000427478 SPATA31D1Q6ZQQ2 1576 aa29.55■■■□□ 2.32
CNEP1R1-202ENST00000427478 SUPT16HQ9Y5B9 1047 aaKnown RBP29.54■■■□□ 2.32
CNEP1R1-202ENST00000427478 CENPJQ9HC77 1338 aaPredicted RBP29.54■■■□□ 2.32
CNEP1R1-202ENST00000427478 SLC24A1O60721 1099 aa29.54■■■□□ 2.32
CNEP1R1-202ENST00000427478 ZFYVE9O95405 1425 aa29.54■■■□□ 2.32
CNEP1R1-202ENST00000427478 SBNO2Q9Y2G9 1366 aa29.53■■■□□ 2.32
CNEP1R1-202ENST00000427478 PNISRQ8TF01 805 aaKnown RBP29.53■■■□□ 2.32
CNEP1R1-202ENST00000427478 ARHGEF28Q8N1W1 1705 aaKnown RBP29.51■■■□□ 2.32
CNEP1R1-202ENST00000427478 ZBED9Q6R2W3 1325 aa29.51■■■□□ 2.31
CNEP1R1-202ENST00000427478 NLRP13Q86W25 1043 aa29.5■■■□□ 2.31
CNEP1R1-202ENST00000427478 STAG3Q9UJ98 1225 aa29.47■■■□□ 2.31
CNEP1R1-202ENST00000427478 KNSTRNQ9Y448 316 aa29.47■■■□□ 2.31
CNEP1R1-202ENST00000427478 SENP3Q9H4L4 574 aaPredicted RBP29.46■■■□□ 2.31
CNEP1R1-202ENST00000427478 ASXL1Q8IXJ9 1541 aa29.46■■■□□ 2.31
CNEP1R1-202ENST00000427478 ESF1Q9H501 851 aaKnown RBP29.45■■■□□ 2.3
CNEP1R1-202ENST00000427478 LRPPRCP42704 1394 aaKnown RBP29.43■■■□□ 2.3
CNEP1R1-202ENST00000427478 A2ML1A8K2U0 1454 aa29.41■■■□□ 2.3
CNEP1R1-202ENST00000427478 ZMYM3Q14202 1370 aa29.4■■■□□ 2.3
CNEP1R1-202ENST00000427478 AMER1Q5JTC6 1135 aaPredicted RBP29.39■■■□□ 2.3
CNEP1R1-202ENST00000427478 FKBP8Q14318 412 aa29.39■■■□□ 2.3
CNEP1R1-202ENST00000427478 NEFLP07196 543 aa29.37■■■□□ 2.29
CNEP1R1-202ENST00000427478 ALKQ9UM73 1620 aa29.36■■■□□ 2.29
CNEP1R1-202ENST00000427478 STK26Q9P289 416 aa29.33■■■□□ 2.29
CNEP1R1-202ENST00000427478 TULP4Q9NRJ4 1543 aa29.33■■■□□ 2.29
CNEP1R1-202ENST00000427478 RIMS2Q9UQ26 1411 aa29.32■■■□□ 2.28
CNEP1R1-202ENST00000427478 NPC1L1Q9UHC9 1359 aa29.31■■■□□ 2.28
CNEP1R1-202ENST00000427478 SENP3-EIF4A1A0A087X0R7 540 aa29.31■■■□□ 2.28
CNEP1R1-202ENST00000427478 YTHDC2Q9H6S0 1430 aaKnown RBP29.3■■■□□ 2.28
CNEP1R1-202ENST00000427478 PTPRMP28827 1452 aa29.29■■■□□ 2.28
CNEP1R1-202ENST00000427478 CARD14Q9BXL6 1004 aa29.29■■■□□ 2.28
CNEP1R1-202ENST00000427478 TRHP20396 242 aaPredicted RBP29.27■■■□□ 2.28
CNEP1R1-202ENST00000427478 PPP2R1AP30153 589 aa29.27■■■□□ 2.28
CNEP1R1-202ENST00000427478 SAFB2Q14151 953 aaKnown RBP eCLIP29.27■■■□□ 2.28
CNEP1R1-202ENST00000427478 EVC2Q86UK5 1308 aa29.27■■■□□ 2.28
CNEP1R1-202ENST00000427478 SETD1AO15047 1707 aaKnown RBP29.27■■■□□ 2.28
CNEP1R1-202ENST00000427478 TNRQ92752 1358 aa29.26■■■□□ 2.27
CNEP1R1-202ENST00000427478 BCANQ96GW7 911 aa29.25■■■□□ 2.27
CNEP1R1-202ENST00000427478 SLC12A5Q9H2X9 1139 aa29.23■■■□□ 2.27
CNEP1R1-202ENST00000427478 UBR1Q8IWV7 1749 aa29.22■■■□□ 2.27
CNEP1R1-202ENST00000427478 NSD3Q9BZ95 1437 aa29.21■■■□□ 2.27
CNEP1R1-202ENST00000427478 NRXN3Q9Y4C0 1643 aa29.21■■■□□ 2.27
CNEP1R1-202ENST00000427478 SMG6Q86US8 1419 aaKnown RBP29.2■■■□□ 2.27
CNEP1R1-202ENST00000427478 PRAM1Q96QH2 718 aa29.2■■■□□ 2.27
CNEP1R1-202ENST00000427478 PUS7Q96PZ0 661 aaKnown RBP29.19■■■□□ 2.26
CNEP1R1-202ENST00000427478 BLMP54132 1417 aaPredicted RBP29.18■■■□□ 2.26
CNEP1R1-202ENST00000427478 CABP2Q9NPB3 220 aa29.18■■■□□ 2.26
CNEP1R1-202ENST00000427478 POGKQ9P215 609 aa29.18■■■□□ 2.26
CNEP1R1-202ENST00000427478 FER1L4A9Z1Z3 1794 aa29.16■■■□□ 2.26
CNEP1R1-202ENST00000427478 USP32Q8NFA0 1604 aa29.16■■■□□ 2.26
CNEP1R1-202ENST00000427478 MINK1Q8N4C8 1332 aaPredicted RBP29.16■■■□□ 2.26
CNEP1R1-202ENST00000427478 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.15■■■□□ 2.26
CNEP1R1-202ENST00000427478 INSRP06213 1382 aa29.15■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms