RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 EIF6P56537 245 aaKnown RBP3.78□□□□□ -1.8
CCDC88A-205ENST00000426576 CACNB1Q02641 598 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-205ENST00000426576 ERCC6L2Q5T890 1561 aa3.78□□□□□ -1.8
CCDC88A-205ENST00000426576 FAM98CQ17RN3 349 aaKnown RBP3.78□□□□□ -1.8
CCDC88A-205ENST00000426576 C9orf131Q5VYM1 1079 aa3.78□□□□□ -1.8
CCDC88A-205ENST00000426576 CCDC174Q6PII3 467 aa3.78□□□□□ -1.8
CCDC88A-205ENST00000426576 ANO8Q9HCE9 1232 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-205ENST00000426576 BAZ1BQ9UIG0 1483 aaKnown RBP3.78□□□□□ -1.8
CCDC88A-205ENST00000426576 VEGFAP15692 232 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-205ENST00000426576 SEPT12Q8IYM1 358 aa3.78□□□□□ -1.8
CCDC88A-205ENST00000426576 ZKSCAN4Q969J2 545 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-205ENST00000426576 WDR78Q5VTH9 848 aa3.78□□□□□ -1.81
CCDC88A-205ENST00000426576 ABHD8Q96I13 439 aa3.78□□□□□ -1.81
CCDC88A-205ENST00000426576 RAB23Q9ULC3 237 aa3.78□□□□□ -1.81
CCDC88A-205ENST00000426576 SPATA31A6Q5VVP1 1343 aa3.77□□□□□ -1.81
CCDC88A-205ENST00000426576 SUGP1Q8IWZ8 645 aaKnown RBP3.77□□□□□ -1.81
CCDC88A-205ENST00000426576 SLC26A8Q96RN1 970 aa3.77□□□□□ -1.81
CCDC88A-205ENST00000426576 CA12O43570 354 aa3.77□□□□□ -1.81
CCDC88A-205ENST00000426576 PPM1FP49593 454 aaPredicted RBP3.77□□□□□ -1.81
CCDC88A-205ENST00000426576 ABCF1Q8NE71 845 aaKnown RBP eCLIP3.77□□□□□ -1.81
CCDC88A-205ENST00000426576 FAM50BQ9Y247 325 aa3.77□□□□□ -1.81
CCDC88A-205ENST00000426576 CA8P35219 290 aa3.77□□□□□ -1.81
CCDC88A-205ENST00000426576 DEFB115Q30KQ5 88 aa3.77□□□□□ -1.81
CCDC88A-205ENST00000426576 CCDC87Q9NVE4 849 aa3.77□□□□□ -1.81
CCDC88A-205ENST00000426576 SLAIN2Q9P270 581 aa3.77□□□□□ -1.81
CCDC88A-205ENST00000426576 MAP1BP46821 2468 aaKnown RBP3.77□□□□□ -1.81
CCDC88A-205ENST00000426576 POTEAQ6S8J7 498 aa3.76□□□□□ -1.81
CCDC88A-205ENST00000426576 TRIM34Q9BYJ4 488 aa3.76□□□□□ -1.81
CCDC88A-205ENST00000426576 YEATS2Q9ULM3 1422 aa3.76□□□□□ -1.81
CCDC88A-205ENST00000426576 LBX1P52954 281 aa3.76□□□□□ -1.81
CCDC88A-205ENST00000426576 JAG2Q9Y219 1238 aa3.76□□□□□ -1.81
CCDC88A-205ENST00000426576 AKNAQ7Z591 1439 aa3.76□□□□□ -1.81
CCDC88A-205ENST00000426576 IRS2Q9Y4H2 1338 aa3.76□□□□□ -1.81
CCDC88A-205ENST00000426576 CEP250Q9BV73 2442 aa3.76□□□□□ -1.81
CCDC88A-205ENST00000426576 PKD1L2Q7Z442 2459 aa3.76□□□□□ -1.81
CCDC88A-205ENST00000426576 EXOC5O00471 708 aa3.76□□□□□ -1.81
CCDC88A-205ENST00000426576 FRAT2O75474 233 aaPredicted RBP3.76□□□□□ -1.81
CCDC88A-205ENST00000426576 FMNL1O95466 1100 aaPredicted RBP3.76□□□□□ -1.81
CCDC88A-205ENST00000426576 NLRP2Q9NX02 1062 aa3.76□□□□□ -1.81
CCDC88A-205ENST00000426576 SLC51AQ86UW1 340 aa3.76□□□□□ -1.81
CCDC88A-205ENST00000426576 FLAD1Q8NFF5 587 aa3.76□□□□□ -1.81
CCDC88A-205ENST00000426576 NBPF9Q3BBW0 867 aa3.75□□□□□ -1.81
CCDC88A-205ENST00000426576 NUTM1Q86Y26 1132 aa3.75□□□□□ -1.81
CCDC88A-205ENST00000426576 C2orf69Q8N8R5 385 aa3.75□□□□□ -1.81
CCDC88A-205ENST00000426576 GPRASP1Q5JY77 1395 aa3.75□□□□□ -1.81
CCDC88A-205ENST00000426576 ADGRL1O94910 1474 aa3.75□□□□□ -1.81
CCDC88A-205ENST00000426576 GAPVD1Q14C86 1478 aa3.75□□□□□ -1.81
CCDC88A-205ENST00000426576 TULP1O00294 542 aaPredicted RBP3.75□□□□□ -1.81
CCDC88A-205ENST00000426576 PHF14O94880 888 aa3.75□□□□□ -1.81
CCDC88A-205ENST00000426576 STK26Q9P289 416 aa3.75□□□□□ -1.81
CCDC88A-205ENST00000426576 SPAG9O60271 1321 aaKnown RBP3.75□□□□□ -1.81
CCDC88A-205ENST00000426576 MFSD1Q9H3U5 465 aa3.75□□□□□ -1.81
CCDC88A-205ENST00000426576 HOXD10P28358 340 aa3.74□□□□□ -1.81
CCDC88A-205ENST00000426576 UBXN2AP68543 259 aa3.74□□□□□ -1.81
CCDC88A-205ENST00000426576 LRPPRCP42704 1394 aaKnown RBP3.74□□□□□ -1.81
CCDC88A-205ENST00000426576 LPXNO60711 386 aa3.74□□□□□ -1.81
CCDC88A-205ENST00000426576 KIF12Q96FN5 646 aa3.74□□□□□ -1.81
CCDC88A-205ENST00000426576 DDB1Q16531 1140 aa3.74□□□□□ -1.81
CCDC88A-205ENST00000426576 UTP14AQ9BVJ6 771 aaKnown RBP3.74□□□□□ -1.81
CCDC88A-205ENST00000426576 FHDC1Q9C0D6 1143 aaPredicted RBP3.74□□□□□ -1.81
CCDC88A-205ENST00000426576 HRCP23327 699 aa3.74□□□□□ -1.81
CCDC88A-205ENST00000426576 C1QTNF1Q9BXJ1 281 aa3.74□□□□□ -1.81
CCDC88A-205ENST00000426576 ZBTB24O43167 697 aaPredicted RBP3.73□□□□□ -1.81
CCDC88A-205ENST00000426576 ZPR1O75312 459 aa3.73□□□□□ -1.81
CCDC88A-205ENST00000426576 DDX54Q8TDD1 881 aaKnown RBP3.73□□□□□ -1.81
CCDC88A-205ENST00000426576 PPP2R3CQ969Q6 453 aa3.73□□□□□ -1.81
CCDC88A-205ENST00000426576 CFDP1Q9UEE9 299 aaPredicted RBP3.73□□□□□ -1.81
CCDC88A-205ENST00000426576 RP1L1Q8IWN7 2480 aaPredicted RBP3.73□□□□□ -1.81
CCDC88A-205ENST00000426576 EVI5O60447 810 aa3.73□□□□□ -1.81
CCDC88A-205ENST00000426576 RAD21O60216 631 aa3.72□□□□□ -1.81
CCDC88A-205ENST00000426576 XPCQ01831 940 aaPredicted RBP3.72□□□□□ -1.81
CCDC88A-205ENST00000426576 CACNA1BQ00975 2339 aa3.72□□□□□ -1.81
CCDC88A-205ENST00000426576 RFC4P35249 363 aa3.72□□□□□ -1.81
CCDC88A-205ENST00000426576 PRIM1P49642 420 aaKnown RBP3.72□□□□□ -1.81
CCDC88A-205ENST00000426576 SAFB2Q14151 953 aaKnown RBP eCLIP3.72□□□□□ -1.81
CCDC88A-205ENST00000426576 ZNF697Q5TEC3 545 aa3.72□□□□□ -1.81
CCDC88A-205ENST00000426576 TSC1Q92574 1164 aa3.72□□□□□ -1.81
CCDC88A-205ENST00000426576 KLRG1Q96E93 195 aa3.72□□□□□ -1.81
CCDC88A-205ENST00000426576 CREBBPQ92793 2442 aa3.72□□□□□ -1.81
CCDC88A-205ENST00000426576 MSL1Q68DK7 614 aa3.72□□□□□ -1.81
CCDC88A-205ENST00000426576 LTV1Q96GA3 475 aaPredicted RBP3.72□□□□□ -1.81
CCDC88A-205ENST00000426576 MTFR1LQ9H019 292 aa3.72□□□□□ -1.81
CCDC88A-205ENST00000426576 IRF2BPLQ9H1B7 796 aa3.72□□□□□ -1.81
CCDC88A-205ENST00000426576 PTPRTO14522 1441 aa3.72□□□□□ -1.81
CCDC88A-205ENST00000426576 PPM1GO15355 546 aaPredicted RBP3.71□□□□□ -1.81
CCDC88A-205ENST00000426576 IBSPP21815 317 aaPredicted RBP3.71□□□□□ -1.81
CCDC88A-205ENST00000426576 GPR101Q96P66 508 aaPredicted RBP3.71□□□□□ -1.81
CCDC88A-205ENST00000426576 NPHP3Q7Z494 1330 aa3.71□□□□□ -1.82
CCDC88A-205ENST00000426576 FAM50AQ14320 339 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-205ENST00000426576 COL13A1Q5TAT6 717 aaPredicted RBP3.71□□□□□ -1.82
CCDC88A-205ENST00000426576 RAPGEF4Q8WZA2 1011 aa3.71□□□□□ -1.82
CCDC88A-205ENST00000426576 RRAGCQ9HB90 399 aa3.71□□□□□ -1.82
CCDC88A-205ENST00000426576 H7C1D1 291 aa3.71□□□□□ -1.82
CCDC88A-205ENST00000426576 RBM26Q5T8P6 1007 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-205ENST00000426576 SULF1Q8IWU6 871 aa3.71□□□□□ -1.82
CCDC88A-205ENST00000426576 RBM42Q9BTD8 480 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-205ENST00000426576 PODXL2Q9NZ53 605 aa3.71□□□□□ -1.82
CCDC88A-205ENST00000426576 TMOD2Q9NZR1 351 aa3.71□□□□□ -1.82
CCDC88A-205ENST00000426576 TOP2BQ02880 1626 aa3.71□□□□□ -1.82
CCDC88A-205ENST00000426576 MRC2Q9UBG0 1479 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms