RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 RIMS2Q9UQ26 1411 aa33.9■■■■□ 3.02
SMARCB1-205ENST00000417137 PPP1R15AO75807 674 aaPredicted RBP33.9■■■■□ 3.02
SMARCB1-205ENST00000417137 POLR1AO95602 1720 aaPredicted RBP33.9■■■■□ 3.02
SMARCB1-205ENST00000417137 NEURL4Q96JN8 1562 aa33.88■■■■□ 3.01
SMARCB1-205ENST00000417137 ZFYVE9O95405 1425 aa33.86■■■■□ 3.01
SMARCB1-205ENST00000417137 BCANQ96GW7 911 aa33.84■■■■□ 3.01
SMARCB1-205ENST00000417137 ANKRD30BQ9BXX2 1392 aa33.83■■■■□ 3.01
SMARCB1-205ENST00000417137 RPGRIP1LQ68CZ1 1315 aa33.81■■■■□ 3
SMARCB1-205ENST00000417137 MYO5BQ9ULV0 1848 aa33.81■■■■□ 3
SMARCB1-205ENST00000417137 KIF1BO60333 1816 aa33.8■■■■□ 3
SMARCB1-205ENST00000417137 NUTM2DQ5VT03 806 aaPredicted RBP33.79■■■■□ 3
SMARCB1-205ENST00000417137 IQGAP1P46940 1657 aa33.78■■■■□ 3
SMARCB1-205ENST00000417137 PLEKHG1Q9ULL1 1385 aa33.77■■■■□ 3
SMARCB1-205ENST00000417137 PCGF6Q9BYE7 350 aa33.77■■■■□ 3
SMARCB1-205ENST00000417137 RGL3Q3MIN7 710 aa33.75■■■□□ 2.99
SMARCB1-205ENST00000417137 VGFO15240 615 aaPredicted RBP33.74■■■□□ 2.99
SMARCB1-205ENST00000417137 ZNF335Q9H4Z2 1342 aaPredicted RBP33.73■■■□□ 2.99
SMARCB1-205ENST00000417137 IQSEC2Q5JU85 1478 aa33.71■■■□□ 2.99
SMARCB1-205ENST00000417137 SLC26A8Q96RN1 970 aa33.71■■■□□ 2.99
SMARCB1-205ENST00000417137 SPATA31E1Q6ZUB1 1445 aa33.7■■■□□ 2.99
SMARCB1-205ENST00000417137 LTBP4Q8N2S1 1624 aa33.69■■■□□ 2.98
SMARCB1-205ENST00000417137 SENP3Q9H4L4 574 aaPredicted RBP33.68■■■□□ 2.98
SMARCB1-205ENST00000417137 DISP3Q9P2K9 1392 aa33.68■■■□□ 2.98
SMARCB1-205ENST00000417137 TBX22Q9Y458 520 aa33.67■■■□□ 2.98
SMARCB1-205ENST00000417137 NEXMIFQ5QGS0 1516 aa33.66■■■□□ 2.98
SMARCB1-205ENST00000417137 DHX57Q6P158 1386 aaKnown RBP33.62■■■□□ 2.97
SMARCB1-205ENST00000417137 KCNA6P17658 529 aa33.58■■■□□ 2.97
SMARCB1-205ENST00000417137 ADAMTS13Q76LX8 1427 aa33.56■■■□□ 2.96
SMARCB1-205ENST00000417137 CPS1P31327 1500 aa33.55■■■□□ 2.96
SMARCB1-205ENST00000417137 DIP2AQ14689 1571 aa33.53■■■□□ 2.96
SMARCB1-205ENST00000417137 STAC3Q96MF2 364 aa33.53■■■□□ 2.96
SMARCB1-205ENST00000417137 SETBP1Q9Y6X0 1596 aa33.52■■■□□ 2.96
SMARCB1-205ENST00000417137 PIK3R4Q99570 1358 aa33.52■■■□□ 2.96
SMARCB1-205ENST00000417137 ADGRF5Q8IZF2 1346 aa33.52■■■□□ 2.96
SMARCB1-205ENST00000417137 PPLO60437 1756 aa33.51■■■□□ 2.95
SMARCB1-205ENST00000417137 ILDR2Q71H61 639 aa33.5■■■□□ 2.95
SMARCB1-205ENST00000417137 DCAF11Q8TEB1 546 aa33.48■■■□□ 2.95
SMARCB1-205ENST00000417137 SOCS7O14512 581 aa33.47■■■□□ 2.95
SMARCB1-205ENST00000417137 SIN3AQ96ST3 1273 aa33.45■■■□□ 2.95
SMARCB1-205ENST00000417137 KDM2AQ9Y2K7 1162 aa33.45■■■□□ 2.95
SMARCB1-205ENST00000417137 NEUROD1Q13562 356 aa33.44■■■□□ 2.94
SMARCB1-205ENST00000417137 PROSER2Q86WR7 435 aaPredicted RBP33.43■■■□□ 2.94
SMARCB1-205ENST00000417137 NRXN3Q9Y4C0 1643 aa33.42■■■□□ 2.94
SMARCB1-205ENST00000417137 AMOTL2Q9Y2J4 779 aa33.42■■■□□ 2.94
SMARCB1-205ENST00000417137 MYOM2P54296 1465 aa33.42■■■□□ 2.94
SMARCB1-205ENST00000417137 METP08581 1390 aa33.41■■■□□ 2.94
SMARCB1-205ENST00000417137 IFT172Q9UG01 1749 aa33.4■■■□□ 2.94
SMARCB1-205ENST00000417137 LRRC7Q96NW7 1537 aa33.38■■■□□ 2.93
SMARCB1-205ENST00000417137 UBAP1LF5GYI3 381 aa33.38■■■□□ 2.93
SMARCB1-205ENST00000417137 ALKQ9UM73 1620 aa33.38■■■□□ 2.93
SMARCB1-205ENST00000417137 NKTRP30414 1462 aaKnown RBP33.37■■■□□ 2.93
SMARCB1-205ENST00000417137 PIK3C2GO75747 1445 aa33.37■■■□□ 2.93
SMARCB1-205ENST00000417137 STRCP1A6NGW2 1772 aa33.37■■■□□ 2.93
SMARCB1-205ENST00000417137 NWD1Q149M9 1564 aa33.36■■■□□ 2.93
SMARCB1-205ENST00000417137 C14orf93Q9H972 538 aaKnown RBP33.36■■■□□ 2.93
SMARCB1-205ENST00000417137 NRXN1Q9ULB1 1477 aa33.36■■■□□ 2.93
SMARCB1-205ENST00000417137 CHD2O14647 1828 aaKnown RBP33.35■■■□□ 2.93
SMARCB1-205ENST00000417137 PTPRUQ92729 1446 aa33.34■■■□□ 2.93
SMARCB1-205ENST00000417137 TMEM94Q12767 1356 aa33.32■■■□□ 2.92
SMARCB1-205ENST00000417137 CFAP70Q5T0N1 1121 aa33.3■■■□□ 2.92
SMARCB1-205ENST00000417137 L3MBTL2Q969R5 705 aa33.3■■■□□ 2.92
SMARCB1-205ENST00000417137 TOM1O60784 492 aa33.27■■■□□ 2.92
SMARCB1-205ENST00000417137 RBM33Q96EV2 1170 aaKnown RBP33.26■■■□□ 2.91
SMARCB1-205ENST00000417137 NCOA3Q9Y6Q9 1424 aa33.26■■■□□ 2.91
SMARCB1-205ENST00000417137 CLSPNQ9HAW4 1339 aa33.26■■■□□ 2.91
SMARCB1-205ENST00000417137 TMEM132EQ6IEE7 984 aa33.25■■■□□ 2.91
SMARCB1-205ENST00000417137 C14orf37Q86TY3 774 aa33.24■■■□□ 2.91
SMARCB1-205ENST00000417137 SETD1AO15047 1707 aaKnown RBP33.22■■■□□ 2.91
SMARCB1-205ENST00000417137 CCER1Q8TC90 406 aaPredicted RBP33.21■■■□□ 2.91
SMARCB1-205ENST00000417137 STK26Q9P289 416 aa33.21■■■□□ 2.91
SMARCB1-205ENST00000417137 LRPPRCP42704 1394 aaKnown RBP33.21■■■□□ 2.91
SMARCB1-205ENST00000417137 TONSLQ96HA7 1378 aa33.21■■■□□ 2.91
SMARCB1-205ENST00000417137 LAMC1P11047 1609 aa33.2■■■□□ 2.9
SMARCB1-205ENST00000417137 XRN1Q8IZH2 1706 aaKnown RBP33.19■■■□□ 2.9
SMARCB1-205ENST00000417137 MSH6P52701 1360 aa33.19■■■□□ 2.9
SMARCB1-205ENST00000417137 ABCC11Q96J66 1382 aa33.18■■■□□ 2.9
SMARCB1-205ENST00000417137 C19orf44Q9H6X5 657 aa33.17■■■□□ 2.9
SMARCB1-205ENST00000417137 PTCH1Q13635 1447 aa33.17■■■□□ 2.9
SMARCB1-205ENST00000417137 PRAG1Q86YV5 1406 aa33.16■■■□□ 2.9
SMARCB1-205ENST00000417137 YTHDC2Q9H6S0 1430 aaKnown RBP33.16■■■□□ 2.9
SMARCB1-205ENST00000417137 ROBO2Q9HCK4 1378 aa33.13■■■□□ 2.89
SMARCB1-205ENST00000417137 SIRT1Q96EB6 747 aa33.13■■■□□ 2.89
SMARCB1-205ENST00000417137 ASXL1Q8IXJ9 1541 aa33.11■■■□□ 2.89
SMARCB1-205ENST00000417137 TECPR2O15040 1411 aa33.11■■■□□ 2.89
SMARCB1-205ENST00000417137 XIRP1Q702N8 1843 aaKnown RBP33.1■■■□□ 2.89
SMARCB1-205ENST00000417137 ATF3P18847 181 aa33.1■■■□□ 2.89
SMARCB1-205ENST00000417137 CADPS2Q86UW7 1296 aa33.09■■■□□ 2.89
SMARCB1-205ENST00000417137 PIP4K2BP78356 416 aa33.08■■■□□ 2.89
SMARCB1-205ENST00000417137 SCAF1Q9H7N4 1312 aaKnown RBP33.07■■■□□ 2.88
SMARCB1-205ENST00000417137 TIMELESSQ9UNS1 1208 aa33.06■■■□□ 2.88
SMARCB1-205ENST00000417137 WAPLQ7Z5K2 1190 aa33.05■■■□□ 2.88
SMARCB1-205ENST00000417137 ADGRB1O14514 1584 aa33.04■■■□□ 2.88
SMARCB1-205ENST00000417137 FAM135BQ49AJ0 1406 aa33.04■■■□□ 2.88
SMARCB1-205ENST00000417137 TRAK1Q9UPV9 953 aa33.04■■■□□ 2.88
SMARCB1-205ENST00000417137 ADGRL3Q9HAR2 1447 aa33.02■■■□□ 2.88
SMARCB1-205ENST00000417137 HSPA1LP34931 641 aa33.02■■■□□ 2.88
SMARCB1-205ENST00000417137 POGKQ9P215 609 aa33.02■■■□□ 2.88
SMARCB1-205ENST00000417137 SLAIN2Q9P270 581 aa33.02■■■□□ 2.88
SMARCB1-205ENST00000417137 NBPF1Q3BBV0 1214 aa33.01■■■□□ 2.87
SMARCB1-205ENST00000417137 DCCP43146 1447 aa33.01■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms