RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.74■□□□□ 0.27
RFFL-204ENST00000414419 STRCP1A6NGW2 1772 aa16.72■□□□□ 0.27
RFFL-204ENST00000414419 SLC26A8Q96RN1 970 aa16.72■□□□□ 0.27
RFFL-204ENST00000414419 ZNF326Q5BKZ1 582 aaKnown RBP16.71■□□□□ 0.27
RFFL-204ENST00000414419 SENP3Q9H4L4 574 aaPredicted RBP16.71■□□□□ 0.27
RFFL-204ENST00000414419 ACIN1Q9UKV3 1341 aaKnown RBP16.7■□□□□ 0.26
RFFL-204ENST00000414419 ZFYVE9O95405 1425 aa16.7■□□□□ 0.26
RFFL-204ENST00000414419 KIF1BO60333 1816 aa16.7■□□□□ 0.26
RFFL-204ENST00000414419 TOM1O60784 492 aa16.7■□□□□ 0.26
RFFL-204ENST00000414419 PLEKHG1Q9ULL1 1385 aa16.69■□□□□ 0.26
RFFL-204ENST00000414419 NUTM2DQ5VT03 806 aaPredicted RBP16.69■□□□□ 0.26
RFFL-204ENST00000414419 TRPM2O94759 1503 aa16.68■□□□□ 0.26
RFFL-204ENST00000414419 KCNA6P17658 529 aa16.67■□□□□ 0.26
RFFL-204ENST00000414419 SETD5Q9C0A6 1442 aa16.67■□□□□ 0.26
RFFL-204ENST00000414419 SCAF1Q9H7N4 1312 aaKnown RBP16.67■□□□□ 0.26
RFFL-204ENST00000414419 CLTCL1P53675 1640 aa16.67■□□□□ 0.26
RFFL-204ENST00000414419 LRRC7Q96NW7 1537 aa16.66■□□□□ 0.26
RFFL-204ENST00000414419 MPHOSPH9Q99550 1183 aa16.65■□□□□ 0.26
RFFL-204ENST00000414419 PIP4K2BP78356 416 aa16.64■□□□□ 0.25
RFFL-204ENST00000414419 TBX22Q9Y458 520 aa16.64■□□□□ 0.25
RFFL-204ENST00000414419 PROSER2Q86WR7 435 aaPredicted RBP16.63■□□□□ 0.25
RFFL-204ENST00000414419 CHD2O14647 1828 aaKnown RBP16.63■□□□□ 0.25
RFFL-204ENST00000414419 FOXD1Q16676 465 aa16.62■□□□□ 0.25
RFFL-204ENST00000414419 XIRP1Q702N8 1843 aaKnown RBP16.61■□□□□ 0.25
RFFL-204ENST00000414419 DIP2AQ14689 1571 aa16.6■□□□□ 0.25
RFFL-204ENST00000414419 RAB3GAP2Q9H2M9 1393 aa16.6■□□□□ 0.25
RFFL-204ENST00000414419 NKTRP30414 1462 aaKnown RBP16.59■□□□□ 0.25
RFFL-204ENST00000414419 NWD1Q149M9 1564 aa16.59■□□□□ 0.25
RFFL-204ENST00000414419 TMEM94Q12767 1356 aa16.58■□□□□ 0.24
RFFL-204ENST00000414419 CCDC144AA2RUR9 1427 aa16.58■□□□□ 0.24
RFFL-204ENST00000414419 ADAMTS13Q76LX8 1427 aa16.58■□□□□ 0.24
RFFL-204ENST00000414419 PIK3R4Q99570 1358 aa16.57■□□□□ 0.24
RFFL-204ENST00000414419 VGFO15240 615 aaPredicted RBP16.57■□□□□ 0.24
RFFL-204ENST00000414419 NEXMIFQ5QGS0 1516 aa16.56■□□□□ 0.24
RFFL-204ENST00000414419 RPGRIP1LQ68CZ1 1315 aa16.56■□□□□ 0.24
RFFL-204ENST00000414419 RBM33Q96EV2 1170 aaKnown RBP16.56■□□□□ 0.24
RFFL-204ENST00000414419 SETBP1Q9Y6X0 1596 aa16.55■□□□□ 0.24
RFFL-204ENST00000414419 C14orf37Q86TY3 774 aa16.54■□□□□ 0.24
RFFL-204ENST00000414419 MSH6P52701 1360 aa16.53■□□□□ 0.24
RFFL-204ENST00000414419 AMOTL2Q9Y2J4 779 aa16.53■□□□□ 0.24
RFFL-204ENST00000414419 PPLO60437 1756 aa16.53■□□□□ 0.24
RFFL-204ENST00000414419 ALKQ9UM73 1620 aa16.52■□□□□ 0.24
RFFL-204ENST00000414419 NRXN3Q9Y4C0 1643 aa16.52■□□□□ 0.24
RFFL-204ENST00000414419 HRCP23327 699 aa16.52■□□□□ 0.24
RFFL-204ENST00000414419 HSPA1LP34931 641 aa16.52■□□□□ 0.24
RFFL-204ENST00000414419 RGL3Q3MIN7 710 aa16.52■□□□□ 0.24
RFFL-204ENST00000414419 NCOA3Q9Y6Q9 1424 aa16.49■□□□□ 0.23
RFFL-204ENST00000414419 METP08581 1390 aa16.48■□□□□ 0.23
RFFL-204ENST00000414419 PTPRUQ92729 1446 aa16.47■□□□□ 0.23
RFFL-204ENST00000414419 SPATA31E1Q6ZUB1 1445 aa16.46■□□□□ 0.23
RFFL-204ENST00000414419 XRN1Q8IZH2 1706 aaKnown RBP16.45■□□□□ 0.22
RFFL-204ENST00000414419 ATF3P18847 181 aa16.45■□□□□ 0.22
RFFL-204ENST00000414419 C19orf44Q9H6X5 657 aa16.45■□□□□ 0.22
RFFL-204ENST00000414419 ANKRD30BQ9BXX2 1392 aa16.45■□□□□ 0.22
RFFL-204ENST00000414419 IFT172Q9UG01 1749 aa16.45■□□□□ 0.22
RFFL-204ENST00000414419 DISP3Q9P2K9 1392 aa16.44■□□□□ 0.22
RFFL-204ENST00000414419 CADPS2Q86UW7 1296 aa16.44■□□□□ 0.22
RFFL-204ENST00000414419 SLAIN2Q9P270 581 aa16.44■□□□□ 0.22
RFFL-204ENST00000414419 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.44■□□□□ 0.22
RFFL-204ENST00000414419 FAM135BQ49AJ0 1406 aa16.44■□□□□ 0.22
RFFL-204ENST00000414419 ROBO1Q9Y6N7 1651 aa16.43■□□□□ 0.22
RFFL-204ENST00000414419 ADGRF5Q8IZF2 1346 aa16.43■□□□□ 0.22
RFFL-204ENST00000414419 SETD1AO15047 1707 aaKnown RBP16.42■□□□□ 0.22
RFFL-204ENST00000414419 DCCP43146 1447 aa16.36■□□□□ 0.21
RFFL-204ENST00000414419 PIK3C2GO75747 1445 aa16.36■□□□□ 0.21
RFFL-204ENST00000414419 PTCH1Q13635 1447 aa16.36■□□□□ 0.21
RFFL-204ENST00000414419 STK26Q9P289 416 aa16.35■□□□□ 0.21
RFFL-204ENST00000414419 PHLPP1O60346 1717 aa16.35■□□□□ 0.21
RFFL-204ENST00000414419 ADGRL3Q9HAR2 1447 aa16.35■□□□□ 0.21
RFFL-204ENST00000414419 NALCNQ8IZF0 1738 aa16.34■□□□□ 0.21
RFFL-204ENST00000414419 ROBO2Q9HCK4 1378 aa16.34■□□□□ 0.21
RFFL-204ENST00000414419 MYOM2P54296 1465 aa16.34■□□□□ 0.21
RFFL-204ENST00000414419 TMEM132EQ6IEE7 984 aa16.33■□□□□ 0.2
RFFL-204ENST00000414419 DCAF11Q8TEB1 546 aa16.33■□□□□ 0.2
RFFL-204ENST00000414419 C14orf93Q9H972 538 aaKnown RBP16.33■□□□□ 0.2
RFFL-204ENST00000414419 KDM2AQ9Y2K7 1162 aa16.33■□□□□ 0.2
RFFL-204ENST00000414419 LAMC1P11047 1609 aa16.32■□□□□ 0.2
RFFL-204ENST00000414419 MED1Q15648 1581 aaPredicted RBP16.32■□□□□ 0.2
RFFL-204ENST00000414419 PRAG1Q86YV5 1406 aa16.31■□□□□ 0.2
RFFL-204ENST00000414419 LRPPRCP42704 1394 aaKnown RBP16.31■□□□□ 0.2
RFFL-204ENST00000414419 CFAP70Q5T0N1 1121 aa16.31■□□□□ 0.2
RFFL-204ENST00000414419 STAC3Q96MF2 364 aa16.31■□□□□ 0.2
RFFL-204ENST00000414419 PHF23Q9BUL5 403 aaPredicted RBP16.31■□□□□ 0.2
RFFL-204ENST00000414419 NRXN1Q9ULB1 1477 aa16.3■□□□□ 0.2
RFFL-204ENST00000414419 DHX57Q6P158 1386 aaKnown RBP16.3■□□□□ 0.2
RFFL-204ENST00000414419 MST1RQ04912 1400 aa16.29■□□□□ 0.2
RFFL-204ENST00000414419 ABCC11Q96J66 1382 aa16.29■□□□□ 0.2
RFFL-204ENST00000414419 KNDC1Q76NI1 1749 aa16.29■□□□□ 0.2
RFFL-204ENST00000414419 BRINP3Q76B58 766 aa16.29■□□□□ 0.2
RFFL-204ENST00000414419 YTHDC2Q9H6S0 1430 aaKnown RBP16.28■□□□□ 0.2
RFFL-204ENST00000414419 WAPLQ7Z5K2 1190 aa16.28■□□□□ 0.2
RFFL-204ENST00000414419 TECPR2O15040 1411 aa16.28■□□□□ 0.2
RFFL-204ENST00000414419 TRIM26Q12899 539 aaPredicted RBP16.27■□□□□ 0.2
RFFL-204ENST00000414419 ASXL1Q8IXJ9 1541 aa16.27■□□□□ 0.2
RFFL-204ENST00000414419 JCADQ9P266 1359 aa16.26■□□□□ 0.19
RFFL-204ENST00000414419 AHDC1Q5TGY3 1603 aaPredicted RBP16.26■□□□□ 0.19
RFFL-204ENST00000414419 SIRT1Q96EB6 747 aa16.25■□□□□ 0.19
RFFL-204ENST00000414419 COL16A1Q07092 1604 aaPredicted RBP16.25■□□□□ 0.19
RFFL-204ENST00000414419 C1orf167Q5SNV9 1468 aa16.24■□□□□ 0.19
RFFL-204ENST00000414419 POGKQ9P215 609 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms