RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 NISCHQ9Y2I1 1504 aa27.31■■□□□ 1.96
RFFL-204ENST00000414419 CCDC180Q9P1Z9 1646 aa24.38■■□□□ 1.49
RFFL-204ENST00000414419 ABCC9O60706 1549 aa24■■□□□ 1.43
RFFL-204ENST00000414419 RB1CC1Q8TDY2 1594 aa23.04■■□□□ 1.28
RFFL-204ENST00000414419 DCAF8L2P0C7V8 631 aa23.01■■□□□ 1.27
RFFL-204ENST00000414419 NACADO15069 1562 aa22.95■■□□□ 1.26
RFFL-204ENST00000414419 MYO15BQ96JP2 1530 aa22.72■■□□□ 1.23
RFFL-204ENST00000414419 ZCCHC6Q5VYS8 1495 aaKnown RBP22.7■■□□□ 1.22
RFFL-204ENST00000414419 DCAF1Q9Y4B6 1507 aa22.57■■□□□ 1.2
RFFL-204ENST00000414419 UNC13AQ9UPW8 1703 aa22.52■■□□□ 1.2
RFFL-204ENST00000414419 PABPN1Q86U42 306 aaKnown RBP eCLIP22.41■■□□□ 1.18
RFFL-204ENST00000414419 BICRAQ9NZM4 1560 aa22.28■■□□□ 1.16
RFFL-204ENST00000414419 SCRIBQ14160 1630 aa22.24■■□□□ 1.15
RFFL-204ENST00000414419 DNAJC5BQ9UF47 199 aa22.12■■□□□ 1.13
RFFL-204ENST00000414419 SHROOM4Q9ULL8 1493 aa22.05■■□□□ 1.12
RFFL-204ENST00000414419 EIF4G1Q04637 1599 aaKnown RBP21.74■■□□□ 1.07
RFFL-204ENST00000414419 CC2D2AQ9P2K1 1620 aa21.7■■□□□ 1.06
RFFL-204ENST00000414419 CECR2Q9BXF3 1484 aa21.58■■□□□ 1.05
RFFL-204ENST00000414419 SMARCA4P51532 1647 aa21.24■□□□□ 0.99
RFFL-204ENST00000414419 BAZ1AQ9NRL2 1556 aaPredicted RBP21.2■□□□□ 0.98
RFFL-204ENST00000414419 SMARCA2P51531 1590 aa21.15■□□□□ 0.98
RFFL-204ENST00000414419 NCAPD3P42695 1498 aa21.15■□□□□ 0.98
RFFL-204ENST00000414419 ATAD2BQ9ULI0 1458 aa21.14■□□□□ 0.98
RFFL-204ENST00000414419 HMGXB3Q12766 1538 aa21.04■□□□□ 0.96
RFFL-204ENST00000414419 MROH2BQ7Z745 1585 aa21.04■□□□□ 0.96
RFFL-204ENST00000414419 PEG3Q9GZU2 1588 aa21■□□□□ 0.95
RFFL-204ENST00000414419 BAZ1BQ9UIG0 1483 aaKnown RBP21■□□□□ 0.95
RFFL-204ENST00000414419 WIZO95785 1651 aa20.83■□□□□ 0.93
RFFL-204ENST00000414419 ERCC6Q03468 1493 aa20.75■□□□□ 0.91
RFFL-204ENST00000414419 RSF1Q96T23 1441 aaPredicted RBP20.74■□□□□ 0.91
RFFL-204ENST00000414419 NESP48681 1621 aa20.7■□□□□ 0.9
RFFL-204ENST00000414419 LAMC3Q9Y6N6 1575 aa20.66■□□□□ 0.9
RFFL-204ENST00000414419 TOP2AP11388 1531 aaKnown RBP20.58■□□□□ 0.89
RFFL-204ENST00000414419 CADPSQ9ULU8 1353 aa20.55■□□□□ 0.88
RFFL-204ENST00000414419 PDS5BQ9NTI5 1447 aa20.53■□□□□ 0.88
RFFL-204ENST00000414419 CUX2O14529 1486 aa20.53■□□□□ 0.88
RFFL-204ENST00000414419 KIF21AQ7Z4S6 1674 aa20.5■□□□□ 0.87
RFFL-204ENST00000414419 THOC2Q8NI27 1593 aaKnown RBP20.42■□□□□ 0.86
RFFL-204ENST00000414419 CFTRP13569 1480 aa20.38■□□□□ 0.85
RFFL-204ENST00000414419 CCDC88BA6NC98 1476 aa20.35■□□□□ 0.85
RFFL-204ENST00000414419 CEP164Q9UPV0 1460 aa20.33■□□□□ 0.85
RFFL-204ENST00000414419 FANCD2Q9BXW9 1451 aa20.32■□□□□ 0.84
RFFL-204ENST00000414419 MRC2Q9UBG0 1479 aa20.31■□□□□ 0.84
RFFL-204ENST00000414419 PRDM2Q13029 1718 aa20.28■□□□□ 0.84
RFFL-204ENST00000414419 WDR62O43379 1518 aa20.22■□□□□ 0.83
RFFL-204ENST00000414419 SUPT5HO00267 1087 aaKnown RBP20.19■□□□□ 0.82
RFFL-204ENST00000414419 URB2Q14146 1524 aaKnown RBP20.1■□□□□ 0.81
RFFL-204ENST00000414419 DNAJC5Q9H3Z4 198 aa20.09■□□□□ 0.81
RFFL-204ENST00000414419 ABCC8Q09428 1581 aa20■□□□□ 0.79
RFFL-204ENST00000414419 TOPBP1Q92547 1522 aa19.97■□□□□ 0.79
RFFL-204ENST00000414419 DNMBPQ6XZF7 1577 aa19.95■□□□□ 0.78
RFFL-204ENST00000414419 IFT140Q96RY7 1462 aa19.9■□□□□ 0.78
RFFL-204ENST00000414419 ZNF608Q9ULD9 1512 aaPredicted RBP19.8■□□□□ 0.76
RFFL-204ENST00000414419 POLA1P09884 1462 aaPredicted RBP19.78■□□□□ 0.76
RFFL-204ENST00000414419 TARBP1Q13395 1621 aaKnown RBP19.76■□□□□ 0.75
RFFL-204ENST00000414419 CUX1P39880 1505 aa19.75■□□□□ 0.75
RFFL-204ENST00000414419 SOGA1O94964 1423 aa19.73■□□□□ 0.75
RFFL-204ENST00000414419 EIF4G3O43432 1585 aaKnown RBP19.73■□□□□ 0.75
RFFL-204ENST00000414419 FGD5Q6ZNL6 1462 aa19.73■□□□□ 0.75
RFFL-204ENST00000414419 OSCARQ8IYS5 282 aa19.71■□□□□ 0.75
RFFL-204ENST00000414419 RAD54L2Q9Y4B4 1467 aa19.71■□□□□ 0.75
RFFL-204ENST00000414419 AQRO60306 1485 aaKnown RBP eCLIP19.69■□□□□ 0.74
RFFL-204ENST00000414419 TDRD9Q8NDG6 1382 aaKnown RBP19.63■□□□□ 0.73
RFFL-204ENST00000414419 WDR97A6NE52 1622 aa19.61■□□□□ 0.73
RFFL-204ENST00000414419 WRNQ14191 1432 aaPredicted RBP eCLIP19.59■□□□□ 0.73
RFFL-204ENST00000414419 TOP2BQ02880 1626 aa19.56■□□□□ 0.72
RFFL-204ENST00000414419 BIVM-ERCC5R4GMW8 1640 aa19.56■□□□□ 0.72
RFFL-204ENST00000414419 FBLN2P98095 1184 aa19.56■□□□□ 0.72
RFFL-204ENST00000414419 CHD1O14646 1710 aa19.55■□□□□ 0.72
RFFL-204ENST00000414419 SYNJ1O43426 1573 aa19.53■□□□□ 0.72
RFFL-204ENST00000414419 ABCA10Q8WWZ4 1543 aa19.51■□□□□ 0.71
RFFL-204ENST00000414419 GRIN2BQ13224 1484 aa19.51■□□□□ 0.71
RFFL-204ENST00000414419 GAPVD1Q14C86 1478 aa19.5■□□□□ 0.71
RFFL-204ENST00000414419 SNAPC4Q5SXM2 1469 aa19.49■□□□□ 0.71
RFFL-204ENST00000414419 PBRM1Q86U86 1689 aa19.49■□□□□ 0.71
RFFL-204ENST00000414419 MAGI1Q96QZ7 1491 aaPredicted RBP19.48■□□□□ 0.71
RFFL-204ENST00000414419 CHMP7Q8WUX9 453 aaPredicted RBP19.47■□□□□ 0.71
RFFL-204ENST00000414419 ABCA5Q8WWZ7 1642 aa19.44■□□□□ 0.7
RFFL-204ENST00000414419 TRIM41Q8WV44 630 aa19.43■□□□□ 0.7
RFFL-204ENST00000414419 SYNJ2O15056 1496 aa19.4■□□□□ 0.7
RFFL-204ENST00000414419 RIMBP3CA6NJZ7 1639 aa19.37■□□□□ 0.69
RFFL-204ENST00000414419 RIMBP3BA6NNM3 1639 aa19.37■□□□□ 0.69
RFFL-204ENST00000414419 RIMBP3Q9UFD9 1639 aa19.37■□□□□ 0.69
RFFL-204ENST00000414419 ARHGEF11O15085 1522 aa19.34■□□□□ 0.69
RFFL-204ENST00000414419 ERICH3Q5RHP9 1530 aa19.3■□□□□ 0.68
RFFL-204ENST00000414419 ADAMTS12P58397 1594 aa19.27■□□□□ 0.68
RFFL-204ENST00000414419 CLASP1Q7Z460 1538 aa19.26■□□□□ 0.67
RFFL-204ENST00000414419 FHAD1B1AJZ9 1412 aa19.25■□□□□ 0.67
RFFL-204ENST00000414419 GRIN2AQ12879 1464 aa19.25■□□□□ 0.67
RFFL-204ENST00000414419 CYB5RLQ6IPT4 315 aa19.22■□□□□ 0.67
RFFL-204ENST00000414419 KIF27Q86VH2 1401 aa19.21■□□□□ 0.67
RFFL-204ENST00000414419 NUP160Q12769 1436 aa19.15■□□□□ 0.66
RFFL-204ENST00000414419 ARAP1Q96P48 1450 aa19.15■□□□□ 0.66
RFFL-204ENST00000414419 CEP170Q5SW79 1584 aa19.15■□□□□ 0.66
RFFL-204ENST00000414419 CUL7Q14999 1698 aa19.11■□□□□ 0.65
RFFL-204ENST00000414419 IGF1RP08069 1367 aa19.11■□□□□ 0.65
RFFL-204ENST00000414419 CARMIL1Q5VZK9 1371 aa19.04■□□□□ 0.64
RFFL-204ENST00000414419 SHROOM2Q13796 1616 aa19.03■□□□□ 0.64
RFFL-204ENST00000414419 JPH4Q96JJ6 628 aa19.01■□□□□ 0.63
RFFL-204ENST00000414419 RUSC2Q8N2Y8 1516 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 113.1 ms