RNA–Protein interactions for RNA: ENST00000398510.7

CHD9-202, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best) BASIC

Gene CHD9, Length 11,337 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-202ENST00000398510 CWC22Q9HCG8 908 aaKnown RBP3.37□□□□□ -1.87
CHD9-202ENST00000398510 PLEKHG5O94827 1062 aa3.37□□□□□ -1.87
CHD9-202ENST00000398510 CCDC112Q8NEF3 446 aa3.37□□□□□ -1.87
CHD9-202ENST00000398510 MRS2Q9HD23 443 aa3.37□□□□□ -1.87
CHD9-202ENST00000398510 CAMSAP2Q08AD1 1489 aa3.37□□□□□ -1.87
CHD9-202ENST00000398510 WDR62O43379 1518 aa3.37□□□□□ -1.87
CHD9-202ENST00000398510 HFM1A2PYH4 1435 aa3.36□□□□□ -1.87
CHD9-202ENST00000398510 CASKIN1Q8WXD9 1431 aa3.36□□□□□ -1.87
CHD9-202ENST00000398510 ATF3P18847 181 aa3.36□□□□□ -1.87
CHD9-202ENST00000398510 PSME1Q06323 249 aa3.36□□□□□ -1.87
CHD9-202ENST00000398510 LOC105371045A0A1W2PR82 267 aa3.36□□□□□ -1.87
CHD9-202ENST00000398510 CAGE1Q8TC20 777 aa3.36□□□□□ -1.87
CHD9-202ENST00000398510 DDX58O95786 925 aaKnown RBP3.36□□□□□ -1.87
CHD9-202ENST00000398510 SLC3A2P08195 630 aaKnown RBP3.36□□□□□ -1.87
CHD9-202ENST00000398510 CCDC47Q96A33 483 aaKnown RBP3.36□□□□□ -1.87
CHD9-202ENST00000398510 RAB3GAP2Q9H2M9 1393 aa3.36□□□□□ -1.87
CHD9-202ENST00000398510 KDM5CP41229 1560 aa3.36□□□□□ -1.87
CHD9-202ENST00000398510 DUOX2Q9NRD8 1548 aa3.36□□□□□ -1.87
CHD9-202ENST00000398510 IPO7O95373 1038 aaKnown RBP3.36□□□□□ -1.87
CHD9-202ENST00000398510 ZNF518AQ6AHZ1 1483 aa3.36□□□□□ -1.87
CHD9-202ENST00000398510 AKNAQ7Z591 1439 aa3.36□□□□□ -1.87
CHD9-202ENST00000398510 MPHOSPH6Q99547 160 aaKnown RBP3.36□□□□□ -1.87
CHD9-202ENST00000398510 PTMAP06454 111 aaKnown RBP3.36□□□□□ -1.87
CHD9-202ENST00000398510 CSB-PGBD3P0DP91 1061 aa3.36□□□□□ -1.87
CHD9-202ENST00000398510 XBP1P17861 261 aa3.36□□□□□ -1.87
CHD9-202ENST00000398510 C1orf141Q5JVX7 400 aa3.36□□□□□ -1.87
CHD9-202ENST00000398510 HSCBQ8IWL3 235 aa3.36□□□□□ -1.87
CHD9-202ENST00000398510 ABCA8O94911 1581 aa3.36□□□□□ -1.87
CHD9-202ENST00000398510 ZNF287Q9HBT7 754 aa3.35□□□□□ -1.87
CHD9-202ENST00000398510 PPP6R1Q9UPN7 881 aa3.35□□□□□ -1.87
CHD9-202ENST00000398510 ADAMTS12P58397 1594 aa3.35□□□□□ -1.87
CHD9-202ENST00000398510 ZRSR2Q15696 482 aaKnown RBP3.35□□□□□ -1.87
CHD9-202ENST00000398510 PPP4R3BQ5MIZ7 849 aa3.35□□□□□ -1.87
CHD9-202ENST00000398510 VSIG10Q8N0Z9 540 aa3.35□□□□□ -1.87
CHD9-202ENST00000398510 CPLX2Q6PUV4 134 aaKnown RBP3.35□□□□□ -1.87
CHD9-202ENST00000398510 HNRNPUQ00839 825 aaKnown RBP eCLIP3.35□□□□□ -1.87
CHD9-202ENST00000398510 CCDC43Q96MW1 224 aaKnown RBP3.35□□□□□ -1.87
CHD9-202ENST00000398510 ZBTB7CA1YPR0 619 aa3.35□□□□□ -1.87
CHD9-202ENST00000398510 HSP90AB1P08238 724 aaKnown RBP3.35□□□□□ -1.87
CHD9-202ENST00000398510 PIP4K2AP48426 406 aaPredicted RBP3.35□□□□□ -1.87
CHD9-202ENST00000398510 P3H3Q8IVL6 736 aa3.35□□□□□ -1.87
CHD9-202ENST00000398510 MAST1Q9Y2H9 1570 aa3.35□□□□□ -1.87
CHD9-202ENST00000398510 GTF2E1P29083 439 aaPredicted RBP3.35□□□□□ -1.87
CHD9-202ENST00000398510 HSP90AB4PQ58FF6 505 aa3.35□□□□□ -1.87
CHD9-202ENST00000398510 VPS37DQ86XT2 251 aa3.35□□□□□ -1.87
CHD9-202ENST00000398510 NUP155O75694 1391 aa3.35□□□□□ -1.87
CHD9-202ENST00000398510 KLHL34Q8N239 644 aa3.35□□□□□ -1.87
CHD9-202ENST00000398510 TAF7LQ5H9L4 462 aa3.35□□□□□ -1.87
CHD9-202ENST00000398510 R3HCC1Q9Y3T6 440 aaKnown RBP3.35□□□□□ -1.87
CHD9-202ENST00000398510 SUPT16HQ9Y5B9 1047 aaKnown RBP3.35□□□□□ -1.87
CHD9-202ENST00000398510 CDR1P51861 262 aa3.34□□□□□ -1.87
CHD9-202ENST00000398510 IRX6P78412 446 aaPredicted RBP3.34□□□□□ -1.87
CHD9-202ENST00000398510 RUFY2Q8WXA3 655 aa3.34□□□□□ -1.87
CHD9-202ENST00000398510 DHX57Q6P158 1386 aaKnown RBP3.34□□□□□ -1.87
CHD9-202ENST00000398510 CCAR1Q8IX12 1150 aaKnown RBP3.34□□□□□ -1.87
CHD9-202ENST00000398510 PLCB2Q00722 1185 aa3.34□□□□□ -1.87
CHD9-202ENST00000398510 LUC7LQ9NQ29 371 aaKnown RBP3.34□□□□□ -1.87
CHD9-202ENST00000398510 TAOK2Q9UL54 1235 aa3.34□□□□□ -1.87
CHD9-202ENST00000398510 FER1L4A9Z1Z3 1794 aa3.34□□□□□ -1.87
CHD9-202ENST00000398510 ERICH2A1L162 156 aa3.34□□□□□ -1.87
CHD9-202ENST00000398510 PMFBP1Q8TBY8 1022 aa3.34□□□□□ -1.87
CHD9-202ENST00000398510 ANKRD18AQ8IVF6 992 aa3.34□□□□□ -1.88
CHD9-202ENST00000398510 CNKSR2Q8WXI2 1034 aa3.34□□□□□ -1.88
CHD9-202ENST00000398510 DEF6Q9H4E7 631 aa3.34□□□□□ -1.88
CHD9-202ENST00000398510 KIAA0586Q9BVV6 1533 aa3.34□□□□□ -1.88
CHD9-202ENST00000398510 SPHKAPQ2M3C7 1700 aa3.34□□□□□ -1.88
CHD9-202ENST00000398510 CDK13Q14004 1512 aaKnown RBP3.34□□□□□ -1.88
CHD9-202ENST00000398510 ST18O60284 1047 aa3.34□□□□□ -1.88
CHD9-202ENST00000398510 SETQ01105 290 aaPredicted RBP3.34□□□□□ -1.88
CHD9-202ENST00000398510 AKAP17AQ02040 695 aaKnown RBP3.34□□□□□ -1.88
CHD9-202ENST00000398510 GPS2Q13227 327 aa3.34□□□□□ -1.88
CHD9-202ENST00000398510 NGDNQ8NEJ9 315 aaKnown RBP3.34□□□□□ -1.88
CHD9-202ENST00000398510 GBP4Q96PP9 640 aa3.34□□□□□ -1.88
CHD9-202ENST00000398510 HECW2Q9P2P5 1572 aa3.34□□□□□ -1.88
CHD9-202ENST00000398510 TCERG1O14776 1098 aaKnown RBP3.33□□□□□ -1.88
CHD9-202ENST00000398510 SYNE3Q6ZMZ3 975 aa3.33□□□□□ -1.88
CHD9-202ENST00000398510 MORC1Q86VD1 984 aa3.33□□□□□ -1.88
CHD9-202ENST00000398510 CAMSAP1Q5T5Y3 1602 aa3.33□□□□□ -1.88
CHD9-202ENST00000398510 CCDC173Q0VFZ6 552 aa3.33□□□□□ -1.88
CHD9-202ENST00000398510 RNF20Q5VTR2 975 aa3.33□□□□□ -1.88
CHD9-202ENST00000398510 PPM1GO15355 546 aaPredicted RBP3.33□□□□□ -1.88
CHD9-202ENST00000398510 SENP3Q9H4L4 574 aaPredicted RBP3.33□□□□□ -1.88
CHD9-202ENST00000398510 CCDC9Q9Y3X0 531 aaKnown RBP3.33□□□□□ -1.88
CHD9-202ENST00000398510 ARID3CA6NKF2 412 aa3.33□□□□□ -1.88
CHD9-202ENST00000398510 MSNP26038 577 aaKnown RBP3.33□□□□□ -1.88
CHD9-202ENST00000398510 GNL3LQ9NVN8 582 aaKnown RBP3.33□□□□□ -1.88
CHD9-202ENST00000398510 HIP1O00291 1037 aa3.33□□□□□ -1.88
CHD9-202ENST00000398510 FRAT2O75474 233 aaPredicted RBP3.33□□□□□ -1.88
CHD9-202ENST00000398510 SART3Q15020 963 aaKnown RBP3.33□□□□□ -1.88
CHD9-202ENST00000398510 CEP152O94986 1710 aa3.33□□□□□ -1.88
CHD9-202ENST00000398510 KIAA0556O60303 1618 aa3.33□□□□□ -1.88
CHD9-202ENST00000398510 DNTTIP2Q5QJE6 756 aaKnown RBP3.33□□□□□ -1.88
CHD9-202ENST00000398510 PCF11O94913 1555 aaKnown RBP3.33□□□□□ -1.88
CHD9-202ENST00000398510 REC8O95072 547 aa3.33□□□□□ -1.88
CHD9-202ENST00000398510 SETD1AO15047 1707 aaKnown RBP3.33□□□□□ -1.88
CHD9-202ENST00000398510 RASSF8Q8NHQ8 419 aa3.33□□□□□ -1.88
CHD9-202ENST00000398510 COG3Q96JB2 828 aa3.33□□□□□ -1.88
CHD9-202ENST00000398510 IPO9Q96P70 1041 aaKnown RBP3.33□□□□□ -1.88
CHD9-202ENST00000398510 PDE3BQ13370 1112 aa3.33□□□□□ -1.88
CHD9-202ENST00000398510 THEMISQ8N1K5 641 aaPredicted RBP3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms