RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 WASHC2CQ9Y4E1 1318 aa23.33■■□□□ 1.33
SQSTM1-202ENST00000389805 SLC4A3P48751 1232 aa23.33■■□□□ 1.33
SQSTM1-202ENST00000389805 LAMC1P11047 1609 aa23.33■■□□□ 1.33
SQSTM1-202ENST00000389805 CLTCL1P53675 1640 aa23.33■■□□□ 1.33
SQSTM1-202ENST00000389805 TRPM2O94759 1503 aa23.33■■□□□ 1.33
SQSTM1-202ENST00000389805 PPM1GO15355 546 aaPredicted RBP23.33■■□□□ 1.32
SQSTM1-202ENST00000389805 ABCA9Q8IUA7 1624 aa23.33■■□□□ 1.32
SQSTM1-202ENST00000389805 UGGT1Q9NYU2 1555 aa23.31■■□□□ 1.32
SQSTM1-202ENST00000389805 CFAP70Q5T0N1 1121 aa23.31■■□□□ 1.32
SQSTM1-202ENST00000389805 MADDQ8WXG6 1647 aa23.3■■□□□ 1.32
SQSTM1-202ENST00000389805 CDCA7LQ96GN5 454 aa23.3■■□□□ 1.32
SQSTM1-202ENST00000389805 INO80Q9ULG1 1556 aaPredicted RBP23.29■■□□□ 1.32
SQSTM1-202ENST00000389805 SPHKAPQ2M3C7 1700 aa23.29■■□□□ 1.32
SQSTM1-202ENST00000389805 NPM1P06748 294 aaKnown RBP eCLIP23.29■■□□□ 1.32
SQSTM1-202ENST00000389805 DEPDC5O75140 1603 aa23.28■■□□□ 1.32
SQSTM1-202ENST00000389805 ADGRF5Q8IZF2 1346 aa23.28■■□□□ 1.32
SQSTM1-202ENST00000389805 OSCARQ8IYS5 282 aa23.28■■□□□ 1.32
SQSTM1-202ENST00000389805 RNF17Q9BXT8 1623 aaKnown RBP23.27■■□□□ 1.32
SQSTM1-202ENST00000389805 RCAN3Q9UKA8 241 aa23.27■■□□□ 1.32
SQSTM1-202ENST00000389805 GSE1Q14687 1217 aa23.27■■□□□ 1.32
SQSTM1-202ENST00000389805 KNSTRNQ9Y448 316 aa23.26■■□□□ 1.31
SQSTM1-202ENST00000389805 TET3O43151 1660 aa23.25■■□□□ 1.31
SQSTM1-202ENST00000389805 PLIN1O60240 522 aa23.25■■□□□ 1.31
SQSTM1-202ENST00000389805 CHGAP10645 457 aaKnown RBP23.25■■□□□ 1.31
SQSTM1-202ENST00000389805 GGT6Q6P531 493 aa23.25■■□□□ 1.31
SQSTM1-202ENST00000389805 CEP152O94986 1710 aa23.24■■□□□ 1.31
SQSTM1-202ENST00000389805 NFKBIBQ15653 356 aa23.23■■□□□ 1.31
SQSTM1-202ENST00000389805 SCAF11Q99590 1463 aaKnown RBP23.23■■□□□ 1.31
SQSTM1-202ENST00000389805 VWDEQ8N2E2 1590 aa23.23■■□□□ 1.31
SQSTM1-202ENST00000389805 FRAT1Q92837 279 aaPredicted RBP23.22■■□□□ 1.31
SQSTM1-202ENST00000389805 MROH1Q8NDA8 1641 aa23.22■■□□□ 1.31
SQSTM1-202ENST00000389805 AMER1Q5JTC6 1135 aaPredicted RBP23.21■■□□□ 1.31
SQSTM1-202ENST00000389805 ADAMTS8Q9UP79 889 aa23.21■■□□□ 1.31
SQSTM1-202ENST00000389805 UBE2Q2Q8WVN8 375 aa23.2■■□□□ 1.3
SQSTM1-202ENST00000389805 IQGAP1P46940 1657 aa23.19■■□□□ 1.3
SQSTM1-202ENST00000389805 KIDINS220Q9ULH0 1771 aa23.19■■□□□ 1.3
SQSTM1-202ENST00000389805 PPP2R1AP30153 589 aa23.19■■□□□ 1.3
SQSTM1-202ENST00000389805 STAC3Q96MF2 364 aa23.19■■□□□ 1.3
SQSTM1-202ENST00000389805 MS4A1P11836 297 aa23.18■■□□□ 1.3
SQSTM1-202ENST00000389805 CD109Q6YHK3 1445 aa23.18■■□□□ 1.3
SQSTM1-202ENST00000389805 CFAP65Q6ZU64 1925 aaKnown RBP23.17■■□□□ 1.3
SQSTM1-202ENST00000389805 RAPGEF3O95398 923 aa23.16■■□□□ 1.3
SQSTM1-202ENST00000389805 CDCA8Q53HL2 280 aa23.16■■□□□ 1.3
SQSTM1-202ENST00000389805 DAXXQ9UER7 740 aaPredicted RBP23.15■■□□□ 1.3
SQSTM1-202ENST00000389805 ZNF518AQ6AHZ1 1483 aa23.15■■□□□ 1.3
SQSTM1-202ENST00000389805 DDRGK1Q96HY6 314 aa23.14■■□□□ 1.3
SQSTM1-202ENST00000389805 PDE3BQ13370 1112 aa23.13■■□□□ 1.29
SQSTM1-202ENST00000389805 PPRC1Q5VV67 1664 aaKnown RBP23.11■■□□□ 1.29
SQSTM1-202ENST00000389805 NUTM2DQ5VT03 806 aaPredicted RBP23.11■■□□□ 1.29
SQSTM1-202ENST00000389805 EFCAB6Q5THR3 1501 aa23.11■■□□□ 1.29
SQSTM1-202ENST00000389805 CRBNQ96SW2 442 aa23.11■■□□□ 1.29
SQSTM1-202ENST00000389805 EIF3AQ14152 1382 aaKnown RBP23.11■■□□□ 1.29
SQSTM1-202ENST00000389805 SENP3Q9H4L4 574 aaPredicted RBP23.1■■□□□ 1.29
SQSTM1-202ENST00000389805 BLMP54132 1417 aaPredicted RBP23.1■■□□□ 1.29
SQSTM1-202ENST00000389805 TRAK1Q9UPV9 953 aa23.1■■□□□ 1.29
SQSTM1-202ENST00000389805 NOS1P29475 1434 aa23.09■■□□□ 1.29
SQSTM1-202ENST00000389805 WDR43Q15061 677 aaKnown RBP eCLIP23.09■■□□□ 1.29
SQSTM1-202ENST00000389805 TMEM132EQ6IEE7 984 aa23.09■■□□□ 1.29
SQSTM1-202ENST00000389805 CARD14Q9BXL6 1004 aa23.08■■□□□ 1.29
SQSTM1-202ENST00000389805 MAP3K4Q9Y6R4 1608 aa23.07■■□□□ 1.28
SQSTM1-202ENST00000389805 NPATQ14207 1427 aa23.07■■□□□ 1.28
SQSTM1-202ENST00000389805 ABCA6Q8N139 1617 aa23.07■■□□□ 1.28
SQSTM1-202ENST00000389805 POGZQ7Z3K3 1410 aa23.07■■□□□ 1.28
SQSTM1-202ENST00000389805 MROH2AA6NES4 1674 aa23.06■■□□□ 1.28
SQSTM1-202ENST00000389805 FRAT2O75474 233 aaPredicted RBP23.06■■□□□ 1.28
SQSTM1-202ENST00000389805 CCDC146Q8IYE0 955 aa23.05■■□□□ 1.28
SQSTM1-202ENST00000389805 KIF1BO60333 1816 aa23.05■■□□□ 1.28
SQSTM1-202ENST00000389805 ERVK-7P63135 1459 aa23.05■■□□□ 1.28
SQSTM1-202ENST00000389805 SYNMO15061 1565 aa23.04■■□□□ 1.28
SQSTM1-202ENST00000389805 ASXL1Q8IXJ9 1541 aa23.04■■□□□ 1.28
SQSTM1-202ENST00000389805 MYOM2P54296 1465 aa23.04■■□□□ 1.28
SQSTM1-202ENST00000389805 PLEKHH1Q9ULM0 1364 aa23.03■■□□□ 1.28
SQSTM1-202ENST00000389805 FRMPD1Q5SYB0 1578 aa23.03■■□□□ 1.28
SQSTM1-202ENST00000389805 C20orf194Q5TEA3 1177 aa23.02■■□□□ 1.28
SQSTM1-202ENST00000389805 MYOM1P52179 1685 aa23.02■■□□□ 1.28
SQSTM1-202ENST00000389805 MLH3Q9UHC1 1453 aa23■■□□□ 1.27
SQSTM1-202ENST00000389805 CENPJQ9HC77 1338 aaPredicted RBP23■■□□□ 1.27
SQSTM1-202ENST00000389805 KIAA1210Q9ULL0 1709 aa22.99■■□□□ 1.27
SQSTM1-202ENST00000389805 LMTK2Q8IWU2 1503 aa22.99■■□□□ 1.27
SQSTM1-202ENST00000389805 SLC12A5Q9H2X9 1139 aa22.98■■□□□ 1.27
SQSTM1-202ENST00000389805 INSRP06213 1382 aa22.98■■□□□ 1.27
SQSTM1-202ENST00000389805 C14orf93Q9H972 538 aaKnown RBP22.98■■□□□ 1.27
SQSTM1-202ENST00000389805 NEURL4Q96JN8 1562 aa22.97■■□□□ 1.27
SQSTM1-202ENST00000389805 ZMYM4Q5VZL5 1548 aa22.97■■□□□ 1.27
SQSTM1-202ENST00000389805 TNNT2P45379 298 aaPredicted RBP22.97■■□□□ 1.27
SQSTM1-202ENST00000389805 KDM5AP29375 1690 aaKnown RBP22.97■■□□□ 1.27
SQSTM1-202ENST00000389805 NRXN1Q9ULB1 1477 aa22.96■■□□□ 1.27
SQSTM1-202ENST00000389805 ADGRB3O60242 1522 aa22.96■■□□□ 1.27
SQSTM1-202ENST00000389805 APAF1O14727 1248 aa22.95■■□□□ 1.26
SQSTM1-202ENST00000389805 DUSP27Q5VZP5 1158 aa22.95■■□□□ 1.26
SQSTM1-202ENST00000389805 IFT172Q9UG01 1749 aa22.95■■□□□ 1.26
SQSTM1-202ENST00000389805 HECW2Q9P2P5 1572 aa22.95■■□□□ 1.26
SQSTM1-202ENST00000389805 RGS3P49796 1198 aa22.94■■□□□ 1.26
SQSTM1-202ENST00000389805 PIK3C2GO75747 1445 aa22.93■■□□□ 1.26
SQSTM1-202ENST00000389805 NPC1L1Q9UHC9 1359 aa22.93■■□□□ 1.26
SQSTM1-202ENST00000389805 CYB5RLQ6IPT4 315 aa22.93■■□□□ 1.26
SQSTM1-202ENST00000389805 SPINK5Q9NQ38 1064 aaPredicted RBP22.92■■□□□ 1.26
SQSTM1-202ENST00000389805 SAFB2Q14151 953 aaKnown RBP eCLIP22.92■■□□□ 1.26
SQSTM1-202ENST00000389805 GOLGA2Q08379 1002 aa22.92■■□□□ 1.26
SQSTM1-202ENST00000389805 ABCC3O15438 1527 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms